Wall clock time and date at job start Tue Mar 31 2020 18:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47160 * 120.00088 * 2 1 3 5 5 H 1.08005 * 119.99725 * 119.99539 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99829 * 4 2 1 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47167 * 119.99895 * 8 6 4 11 11 H 1.48495 * 109.47058 * 239.99959 * 8 6 4 12 12 N 1.46901 * 109.46538 * 240.00093 * 2 1 3 13 13 C 1.46902 * 111.00040 * 306.04362 * 12 2 1 14 14 C 1.46899 * 111.00103 * 70.00184 * 12 2 1 15 15 N 1.46499 * 109.47035 * 169.99509 * 14 12 2 16 16 N 1.40157 * 126.24192 * 269.68600 * 15 14 12 17 17 C 1.30350 * 108.04505 * 179.88274 * 16 15 14 18 18 C 1.47955 * 125.73444 * 180.13856 * 17 16 15 19 19 C 1.39481 * 119.74221 * 0.28369 * 18 17 16 20 20 C 1.38370 * 119.05726 * 179.97438 * 19 18 17 21 21 C 1.38804 * 118.52247 * 0.02562 * 20 19 18 22 22 C 1.38284 * 119.39426 * 359.97438 * 21 20 19 23 23 N 1.31732 * 120.90842 * 359.73134 * 22 21 20 24 24 N 1.38152 * 108.52473 * 0.38039 * 17 16 15 25 25 C 1.46503 * 125.86445 * 179.75378 * 24 17 16 26 26 C 1.34786 * 108.26640 * 359.75581 * 24 17 16 27 27 S 1.71201 * 126.17788 * 180.02562 * 26 24 17 28 28 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46803 * 299.99914 * 1 2 3 30 30 H 1.08991 * 109.47175 * 59.99483 * 1 2 3 31 31 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 33 33 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 34 34 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 35 35 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 36 36 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 37 37 H 1.08007 * 120.47208 * 0.02562 * 19 18 17 38 38 H 1.08006 * 120.74008 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.30414 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.54949 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47474 * 270.02600 * 25 24 17 42 42 H 1.09004 * 109.46872 * 30.02654 * 25 24 17 43 43 H 1.09001 * 109.47104 * 150.02220 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2864 3.6036 10 1 3.1475 -0.1859 4.8160 11 1 1.1680 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 7 2.4571 -0.4991 -3.5468 16 7 3.7557 -0.1884 -3.9728 17 6 4.0277 -0.9277 -5.0113 18 6 5.2978 -0.9178 -5.7702 19 6 6.3306 -0.0655 -5.3798 20 6 7.5125 -0.0682 -6.0993 21 6 7.6242 -0.9231 -7.1872 22 6 6.5604 -1.7420 -7.5189 23 7 5.4476 -1.7246 -6.8141 24 7 2.9288 -1.7180 -5.2875 25 6 2.8219 -2.6879 -6.3803 26 6 1.9718 -1.4433 -4.3790 27 16 0.4207 -2.1632 -4.2958 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7091 1.1613 3.4844 32 1 1.8663 -2.5520 -2.1649 33 1 1.6466 -2.5987 -0.3991 34 1 0.3555 -1.9520 -1.4399 35 1 0.6813 0.1053 -2.6087 36 1 2.1024 1.1189 -2.2604 37 1 6.2098 0.5868 -4.5275 38 1 8.3299 0.5803 -5.8207 39 1 8.5338 -0.9490 -7.7687 40 1 6.6444 -2.4078 -8.3652 41 1 2.4227 -2.1946 -7.2664 42 1 3.8087 -3.0935 -6.6038 43 1 2.1551 -3.4975 -6.0836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764972096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:45 Heat of formation + Delta-G solvation = 138.160390 kcal Electronic energy + Delta-G solvation = -26201.662472 eV Core-core repulsion = 22603.556923 eV Total energy + Delta-G solvation = -3598.105549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.90930 -41.09653 -39.30313 -36.56464 -35.01144 -34.28300 -33.58873 -31.98978 -30.48877 -29.54967 -27.95479 -27.30650 -26.25184 -25.15579 -24.66447 -23.66331 -22.50444 -21.42907 -19.40009 -18.38903 -18.20708 -18.10524 -17.85326 -17.07852 -17.06945 -16.71136 -16.56455 -16.23058 -15.45860 -15.14647 -15.05763 -14.90068 -14.57300 -14.32094 -14.21468 -13.78953 -13.61488 -13.17598 -13.04239 -12.98621 -12.86788 -12.73504 -12.72765 -12.56176 -12.40225 -12.21389 -12.08788 -11.98422 -11.56601 -11.00928 -10.97571 -10.66043 -10.52155 -10.13133 -9.33114 -8.98290 -8.72508 -8.13779 -6.24336 -0.65138 -0.17330 0.09165 0.21839 0.87343 0.95062 1.27754 1.40713 1.43012 1.54441 2.40637 2.48652 2.73232 3.05105 3.14115 3.18252 3.51052 3.59288 3.85892 4.02367 4.03154 4.06808 4.15614 4.31324 4.35989 4.40799 4.57109 4.69993 4.70805 4.72275 4.76408 4.80750 4.89093 5.02331 5.05873 5.12333 5.17840 5.24646 5.38887 5.60618 5.64435 5.70513 5.86949 6.03820 6.30315 6.46893 6.67417 6.84156 7.43830 8.92462 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003191 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.136921 B = 8771.687830 C =10020.566287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.227 3.773 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.280 1.280 12 N -0.550 5.550 13 C 0.056 3.944 14 C 0.308 3.692 15 N -0.354 5.354 16 N -0.265 5.265 17 C 0.320 3.680 18 C 0.148 3.852 19 C -0.122 4.122 20 C -0.070 4.070 21 C -0.130 4.130 22 C 0.103 3.897 23 N -0.483 5.483 24 N -0.474 5.474 25 C 0.083 3.917 26 C 0.463 3.537 27 S -0.643 6.643 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.201 0.799 41 H 0.097 0.903 42 H 0.132 0.868 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.167 -2.095 -24.533 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.120 3.880 3 H 0.042 0.958 4 C -0.554 4.554 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.206 1.206 12 N -0.276 5.276 13 C -0.092 4.092 14 C 0.099 3.901 15 N -0.146 5.146 16 N -0.088 5.088 17 C 0.043 3.957 18 C 0.012 3.988 19 C -0.145 4.145 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.056 4.056 23 N -0.194 5.194 24 N -0.172 5.172 25 C -0.056 4.056 26 C 0.098 3.902 27 S -0.516 6.516 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.193 0.807 39 H 0.201 0.799 40 H 0.218 0.782 41 H 0.115 0.885 42 H 0.150 0.850 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.263 -2.240 -23.790 28.905 hybrid contribution -0.029 0.154 0.963 0.976 sum 16.235 -2.086 -22.827 28.089 Atomic orbital electron populations 1.22243 0.99542 0.99583 1.00500 1.19068 0.90375 0.93280 0.85249 0.95803 1.21247 1.30981 1.12497 0.90661 0.93059 1.25602 0.95266 0.95766 1.01540 1.69985 1.37463 1.23853 1.24187 0.85488 0.78087 0.78571 0.79357 1.19752 1.20288 1.20631 1.62219 1.59911 1.03645 1.01793 1.22205 0.97336 0.89868 0.99833 1.22299 0.94011 0.94984 0.78841 1.49609 1.09705 1.30820 1.24437 1.77534 0.96728 1.22532 1.11996 1.22748 0.90078 0.89804 0.93093 1.17838 0.88225 0.98198 0.94577 1.22205 0.93294 0.97915 1.01065 1.22053 0.96571 0.97545 0.93369 1.22880 1.01348 0.94091 0.96687 1.23460 0.86908 0.97411 0.97812 1.67369 1.27406 1.19697 1.04934 1.46380 1.09668 1.34510 1.26599 1.22643 1.07276 0.90388 0.85311 1.23607 0.93960 0.87796 0.84823 1.93368 1.03889 1.65977 1.88402 0.95010 0.91179 0.95397 0.92726 0.93858 0.92772 0.94824 0.89686 0.86252 0.83900 0.80678 0.79869 0.78187 0.88450 0.85013 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 8.22 71.98 0.59 -7.31 16 2 C 0.23 11.55 2.31 44.17 0.10 11.66 16 3 H 0.02 1.31 7.93 -2.39 -0.02 1.29 16 4 C -0.52 -28.74 7.91 25.60 0.20 -28.54 16 5 H 0.05 2.93 7.12 -2.91 -0.02 2.91 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.55 -25.07 4.84 -913.83 -4.42 -29.50 16 13 C 0.06 2.55 7.41 127.69 0.95 3.49 16 14 C 0.31 12.15 5.56 170.81 0.95 13.10 16 15 N -0.35 -12.98 3.58 -359.61 -1.29 -14.27 16 16 N -0.27 -8.58 12.14 -50.81 -0.62 -9.20 16 17 C 0.32 8.67 7.78 136.31 1.06 9.73 16 18 C 0.15 2.88 6.75 41.88 0.28 3.16 16 19 C -0.12 -1.83 9.72 22.60 0.22 -1.61 16 20 C -0.07 -0.49 10.16 22.44 0.23 -0.26 16 21 C -0.13 -0.45 10.11 22.42 0.23 -0.22 16 22 C 0.10 0.69 11.17 84.72 0.95 1.64 16 23 N -0.48 -7.16 7.57 -185.01 -1.40 -8.56 16 24 N -0.47 -13.50 3.16 -541.66 -1.71 -15.21 16 25 C 0.08 1.70 10.30 127.77 1.32 3.01 16 26 C 0.46 16.60 6.62 179.02 1.19 17.78 16 27 S -0.64 -26.36 27.21 -56.49 -1.54 -27.89 16 28 H 0.03 1.57 6.41 -2.39 -0.02 1.56 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 30 H 0.03 1.23 6.91 -2.39 -0.02 1.21 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.04 1.93 5.70 -2.38 -0.01 1.92 16 33 H 0.05 2.60 6.76 -2.39 -0.02 2.59 16 34 H 0.03 1.57 6.16 -2.39 -0.01 1.56 16 35 H 0.09 3.45 6.59 -2.39 -0.02 3.43 16 36 H 0.12 4.39 7.93 -2.39 -0.02 4.37 16 37 H 0.14 2.34 7.83 -2.91 -0.02 2.32 16 38 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.18 -0.77 8.06 -2.91 -0.02 -0.79 16 40 H 0.20 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.13 2.16 6.06 -2.39 -0.01 2.14 16 43 H 0.09 2.09 7.63 -2.39 -0.02 2.08 16 Total: -1.00 -74.11 359.73 1.04 -73.07 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.04 Total: 10.03 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 8.71 Total: 27.05 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -9.20 Total: -128.51 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -26.36 SS G_CDS: -1.54 Total: -27.89 kcal Total: -74.11 1.04 -73.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764972096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.231 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds