Wall clock time and date at job start Tue Mar 31 2020 18:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21255 * 119.99859 * 2 1 4 4 C 1.47199 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.39982 * 120.09691 * 359.97438 * 4 2 1 6 6 C 1.37990 * 120.12732 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.32719 * 359.73714 * 6 5 4 8 8 C 1.39751 * 120.19744 * 0.51644 * 7 6 5 9 9 C 1.47747 * 120.06504 * 179.76611 * 8 7 6 10 10 O 1.21472 * 120.00161 * 179.72228 * 9 8 7 11 11 O 1.34708 * 120.00227 * 359.72289 * 9 8 7 12 12 C 1.45203 * 117.00294 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46594 * 29.99679 * 12 11 9 14 14 C 1.52998 * 109.47127 * 269.99814 * 12 11 9 15 15 C 1.50696 * 109.47261 * 150.00077 * 12 11 9 16 16 O 1.21280 * 120.00000 * 16.02033 * 15 12 11 17 17 N 1.34775 * 120.00229 * 196.03407 * 15 12 11 18 18 C 1.46505 * 119.99910 * 5.35637 * 17 15 12 19 19 C 1.46492 * 120.00249 * 185.36470 * 17 15 12 20 20 C 1.50706 * 109.47383 * 89.99465 * 19 17 15 21 21 H 1.07993 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46850 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47021 * 119.99380 * 24 22 20 27 27 H 1.48492 * 109.47081 * 239.99812 * 24 22 20 28 28 C 1.39320 * 119.87058 * 359.48599 * 8 7 6 29 29 H 1.08997 * 109.47154 * 269.99899 * 1 2 3 30 30 H 1.08999 * 109.47000 * 30.00126 * 1 2 3 31 31 H 1.09009 * 109.46818 * 150.00121 * 1 2 3 32 32 H 1.08001 * 119.93626 * 0.03927 * 5 4 2 33 33 H 1.07998 * 119.83525 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.89973 * 180.26013 * 7 6 5 35 35 H 1.08994 * 109.47116 * 306.14085 * 14 12 11 36 36 H 1.08996 * 109.47218 * 186.13331 * 14 12 11 37 37 H 1.09006 * 109.46975 * 66.13799 * 14 12 11 38 38 H 1.09000 * 109.47126 * 84.82860 * 18 17 15 39 39 H 1.08997 * 109.47350 * 204.83266 * 18 17 15 40 40 H 1.09000 * 109.46993 * 324.82939 * 18 17 15 41 41 H 1.09007 * 109.47186 * 209.99560 * 19 17 15 42 42 H 1.09000 * 109.47111 * 329.99288 * 19 17 15 43 43 H 0.97005 * 119.99915 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.16734 * 180.22913 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2748 0.0006 5 6 1.5452 -2.4882 0.0017 6 6 2.2345 -3.6836 0.0027 7 6 3.6158 -3.6922 -0.0027 8 6 4.3263 -2.4888 0.0015 9 6 5.8037 -2.5014 0.0008 10 8 6.4200 -1.4547 -0.0006 11 8 6.4673 -3.6737 0.0018 12 6 7.9179 -3.6101 0.0017 13 1 8.2419 -2.7046 0.5147 14 6 8.4273 -3.5891 -1.4408 15 6 8.4737 -4.8168 0.7131 16 8 7.7656 -5.7800 0.9170 17 7 9.7576 -4.8254 1.1229 18 6 10.5794 -3.6207 0.9829 19 6 10.3315 -6.0395 1.7082 20 6 10.9375 -6.8850 0.6178 21 1 10.8993 -6.5511 -0.4085 22 6 11.5406 -8.0848 0.9304 23 7 11.5875 -8.4911 2.1804 24 14 12.2911 -9.1331 -0.4213 25 1 12.1070 -8.4580 -1.7311 26 1 13.7410 -9.3166 -0.1580 27 1 11.6215 -10.4582 -0.4495 28 6 3.6387 -1.2771 0.0004 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.4652 -2.4889 0.0014 33 1 1.6914 -4.6171 0.0040 34 1 4.1484 -4.6318 -0.0061 35 1 8.0138 -4.4384 -1.9846 36 1 9.5155 -3.6513 -1.4428 37 1 8.1155 -2.6624 -1.9228 38 1 10.4165 -2.9680 1.8405 39 1 11.6313 -3.9019 0.9349 40 1 10.3016 -3.0957 0.0689 41 1 11.1036 -5.7662 2.4275 42 1 9.5482 -6.6047 2.2133 43 1 12.0122 -9.3351 2.4004 44 1 4.1829 -0.3442 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767435345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:38 Heat of formation + Delta-G solvation = -124.576517 kcal Electronic energy + Delta-G solvation = -27739.893691 eV Core-core repulsion = 23623.056641 eV Total energy + Delta-G solvation = -4116.837050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96552 -40.16508 -39.04221 -38.26798 -36.43113 -34.91945 -33.00720 -32.66944 -31.65804 -31.43344 -29.87955 -27.81766 -26.11724 -25.23051 -24.38408 -23.81734 -22.37389 -21.41990 -20.05335 -18.88697 -18.19223 -17.32505 -16.68732 -16.54219 -16.15012 -16.08773 -15.94078 -15.59138 -15.41240 -15.15499 -14.69338 -14.52919 -14.28703 -14.20941 -13.67477 -13.25655 -13.11255 -12.87580 -12.77953 -12.52771 -12.38653 -12.32589 -12.18307 -12.10631 -11.76962 -11.74486 -11.44660 -11.26976 -10.93463 -10.78227 -10.72618 -10.59948 -10.20962 -10.20360 -9.67306 -9.55125 -9.48245 -8.95774 -8.48763 -7.75453 -6.09427 -4.14794 0.08332 0.52194 1.81842 2.31927 2.43261 3.19488 3.26676 3.34565 3.38313 3.39617 3.56185 3.83435 4.28816 4.37469 4.40063 4.51172 4.60767 4.76173 4.79806 4.81598 4.91966 4.96265 5.01471 5.08112 5.24699 5.25513 5.41579 5.49398 5.51131 5.63215 5.68621 5.77283 5.83810 5.84768 5.91330 6.06228 6.21979 6.28296 6.32384 6.95434 7.07417 7.36563 7.43325 7.60739 7.86596 8.16106 8.25508 8.79845 8.95099 9.50458 10.98672 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.002226 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.398563 B =12575.695334 C =13094.580976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.454 6.454 4 C -0.189 4.189 5 C -0.042 4.042 6 C -0.143 4.143 7 C -0.026 4.026 8 C -0.132 4.132 9 C 0.507 3.493 10 O -0.504 6.504 11 O -0.321 6.321 12 C 0.072 3.928 13 H 0.104 0.896 14 C -0.165 4.165 15 C 0.511 3.489 16 O -0.521 6.521 17 N -0.596 5.596 18 C 0.073 3.927 19 C 0.245 3.755 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.001 3.999 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.358 14.390 -5.294 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.274 3.726 3 O -0.329 6.329 4 C -0.190 4.190 5 C -0.060 4.060 6 C -0.161 4.161 7 C -0.044 4.044 8 C -0.133 4.133 9 C 0.351 3.649 10 O -0.393 6.393 11 O -0.236 6.236 12 C 0.013 3.987 13 H 0.122 0.878 14 C -0.222 4.222 15 C 0.295 3.705 16 O -0.397 6.397 17 N -0.329 5.329 18 C -0.071 4.071 19 C 0.127 3.873 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.017 4.017 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.109 14.556 -5.053 25.333 hybrid contribution 0.695 -0.672 -0.681 1.182 sum -19.415 13.883 -5.734 24.547 Atomic orbital electron populations 1.22238 0.93339 1.05098 1.04986 1.22468 0.91753 0.87312 0.71046 1.90578 1.72088 1.34175 1.36092 1.20451 0.93846 0.95401 1.09271 1.21764 1.00575 0.91347 0.92303 1.21220 0.93958 0.98705 1.02214 1.21966 0.94575 0.98369 0.89471 1.19087 0.89640 0.94696 1.09868 1.21119 0.88743 0.82190 0.72824 1.90830 1.69388 1.33129 1.45967 1.86646 1.21375 1.32431 1.83142 1.22721 0.76805 1.00104 0.99060 0.87817 1.22171 1.02982 1.03548 0.93546 1.19723 0.82921 0.87657 0.80197 1.90687 1.57927 1.35728 1.55338 1.48076 1.09595 1.14666 1.60568 1.21847 0.97551 0.87433 1.00279 1.19381 0.94104 0.80015 0.93846 1.21458 1.36696 1.04603 0.94016 0.92286 1.24948 0.96099 0.97391 0.95696 1.69945 1.44131 1.21979 1.17129 0.86423 0.78654 0.80330 0.81901 1.19774 1.20930 1.20833 1.21539 0.93099 0.97962 0.89092 0.88224 0.89194 0.89402 0.84203 0.84081 0.83119 0.90569 0.89352 0.91196 0.93359 0.90015 0.92219 0.94595 0.93547 0.92685 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.81 9.75 36.01 0.35 -0.46 16 2 C 0.40 3.35 7.23 -30.67 -0.22 3.13 16 3 O -0.45 -5.63 17.09 5.58 0.10 -5.53 16 4 C -0.19 -1.64 5.86 -105.11 -0.62 -2.26 16 5 C -0.04 -0.26 9.36 -39.02 -0.37 -0.62 16 6 C -0.14 -1.00 10.01 -39.71 -0.40 -1.40 16 7 C -0.03 -0.26 9.61 -39.06 -0.38 -0.63 16 8 C -0.13 -1.59 5.87 -105.04 -0.62 -2.21 16 9 C 0.51 7.58 7.87 34.62 0.27 7.85 16 10 O -0.50 -8.29 15.60 -19.24 -0.30 -8.59 16 11 O -0.32 -5.32 8.71 -47.04 -0.41 -5.72 16 12 C 0.07 1.20 2.14 -27.89 -0.06 1.14 16 13 H 0.10 1.61 6.32 -51.93 -0.33 1.28 16 14 C -0.17 -2.36 9.19 37.16 0.34 -2.02 16 15 C 0.51 10.85 6.95 -10.99 -0.08 10.78 16 16 O -0.52 -13.21 16.13 -13.54 -0.22 -13.43 16 17 N -0.60 -12.60 2.86 -182.95 -0.52 -13.12 16 18 C 0.07 1.15 9.79 59.85 0.59 1.73 16 19 C 0.25 6.34 5.18 -5.20 -0.03 6.31 16 20 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 24 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.00 0.02 9.14 -38.68 -0.35 -0.34 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.16 6.46 -51.92 -0.34 -0.18 16 32 H 0.14 0.35 6.34 -52.49 -0.33 0.01 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 40 H 0.06 0.79 4.92 -51.93 -0.26 0.53 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.15 1.84 7.23 -52.49 -0.38 1.46 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -36.05 380.87 -7.54 -43.59 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.66 Total: -1.55 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.98 Total: 7.60 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.21 Total: -38.59 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.83 Total: -33.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.05 -7.54 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767435345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.988 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds