Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21255 * 119.99859 * 2 1 4 4 C 1.47199 * 120.00145 * 179.97438 * 2 1 3 5 5 C 1.39982 * 120.09691 * 359.97438 * 4 2 1 6 6 C 1.37990 * 120.12732 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.32719 * 359.73714 * 6 5 4 8 8 C 1.39751 * 120.19744 * 0.51644 * 7 6 5 9 9 C 1.47747 * 120.06504 * 179.76611 * 8 7 6 10 10 O 1.21472 * 120.00161 * 179.72228 * 9 8 7 11 11 O 1.34708 * 120.00227 * 359.72289 * 9 8 7 12 12 C 1.45203 * 117.00294 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46594 * 29.99679 * 12 11 9 14 14 C 1.52998 * 109.47127 * 269.99814 * 12 11 9 15 15 C 1.50696 * 109.47261 * 150.00077 * 12 11 9 16 16 O 1.21280 * 120.00000 * 16.02033 * 15 12 11 17 17 N 1.34775 * 120.00229 * 196.03407 * 15 12 11 18 18 C 1.46505 * 119.99910 * 5.35637 * 17 15 12 19 19 C 1.46492 * 120.00249 * 185.36470 * 17 15 12 20 20 C 1.50706 * 109.47383 * 89.99465 * 19 17 15 21 21 H 1.07993 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46850 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47021 * 119.99380 * 24 22 20 27 27 H 1.48492 * 109.47081 * 239.99812 * 24 22 20 28 28 C 1.39320 * 119.87058 * 359.48599 * 8 7 6 29 29 H 1.08997 * 109.47154 * 269.99899 * 1 2 3 30 30 H 1.08999 * 109.47000 * 30.00126 * 1 2 3 31 31 H 1.09009 * 109.46818 * 150.00121 * 1 2 3 32 32 H 1.08001 * 119.93626 * 0.03927 * 5 4 2 33 33 H 1.07998 * 119.83525 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.89973 * 180.26013 * 7 6 5 35 35 H 1.08994 * 109.47116 * 306.14085 * 14 12 11 36 36 H 1.08996 * 109.47218 * 186.13331 * 14 12 11 37 37 H 1.09006 * 109.46975 * 66.13799 * 14 12 11 38 38 H 1.09000 * 109.47126 * 84.82860 * 18 17 15 39 39 H 1.08997 * 109.47350 * 204.83266 * 18 17 15 40 40 H 1.09000 * 109.46993 * 324.82939 * 18 17 15 41 41 H 1.09007 * 109.47186 * 209.99560 * 19 17 15 42 42 H 1.09000 * 109.47111 * 329.99288 * 19 17 15 43 43 H 0.97005 * 119.99915 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.16734 * 180.22913 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2748 0.0006 5 6 1.5452 -2.4882 0.0017 6 6 2.2345 -3.6836 0.0027 7 6 3.6158 -3.6922 -0.0027 8 6 4.3263 -2.4888 0.0015 9 6 5.8037 -2.5014 0.0008 10 8 6.4200 -1.4547 -0.0006 11 8 6.4673 -3.6737 0.0018 12 6 7.9179 -3.6101 0.0017 13 1 8.2419 -2.7046 0.5147 14 6 8.4273 -3.5891 -1.4408 15 6 8.4737 -4.8168 0.7131 16 8 7.7656 -5.7800 0.9170 17 7 9.7576 -4.8254 1.1229 18 6 10.5794 -3.6207 0.9829 19 6 10.3315 -6.0395 1.7082 20 6 10.9375 -6.8850 0.6178 21 1 10.8993 -6.5511 -0.4085 22 6 11.5406 -8.0848 0.9304 23 7 11.5875 -8.4911 2.1804 24 14 12.2911 -9.1331 -0.4213 25 1 12.1070 -8.4580 -1.7311 26 1 13.7410 -9.3166 -0.1580 27 1 11.6215 -10.4582 -0.4495 28 6 3.6387 -1.2771 0.0004 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.4652 -2.4889 0.0014 33 1 1.6914 -4.6171 0.0040 34 1 4.1484 -4.6318 -0.0061 35 1 8.0138 -4.4384 -1.9846 36 1 9.5155 -3.6513 -1.4428 37 1 8.1155 -2.6624 -1.9228 38 1 10.4165 -2.9680 1.8405 39 1 11.6313 -3.9019 0.9349 40 1 10.3016 -3.0957 0.0689 41 1 11.1036 -5.7662 2.4275 42 1 9.5482 -6.6047 2.2133 43 1 12.0122 -9.3351 2.4004 44 1 4.1829 -0.3442 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767435345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = -146.633929 kcal Electronic energy + Delta-G solvation = -27740.850172 eV Core-core repulsion = 23623.056641 eV Total energy + Delta-G solvation = -4117.793531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.10962 -41.08395 -40.48592 -39.11897 -37.71849 -36.71415 -34.88193 -33.68128 -32.83160 -32.24776 -30.40268 -29.71756 -27.62536 -26.40461 -25.60909 -24.89265 -23.80967 -22.34200 -20.97949 -20.46443 -19.13498 -18.70835 -18.45356 -17.93763 -17.36141 -17.29153 -16.85634 -16.62661 -16.47955 -16.28544 -16.05788 -16.02135 -15.23628 -14.92014 -14.88707 -14.76349 -14.34747 -14.13018 -13.80770 -13.61622 -13.58375 -13.37003 -13.26902 -13.13283 -13.02631 -12.91764 -12.85170 -12.70831 -12.54193 -12.44007 -12.22476 -12.04355 -11.85073 -11.69965 -10.88084 -10.67842 -10.66022 -10.27367 -10.20020 -9.55533 -8.24177 -6.39006 -0.63694 -0.27457 1.06175 1.12348 1.37415 1.39482 1.49961 1.52053 1.56511 2.26856 2.40805 2.65506 2.99249 3.06057 3.32789 3.36666 3.69388 3.71883 3.77087 3.94097 3.94152 4.08566 4.21456 4.25656 4.39512 4.50806 4.54218 4.60425 4.69894 4.75769 4.79782 4.82177 4.90044 5.01555 5.03008 5.10907 5.14612 5.17556 5.19755 5.32767 5.49559 5.64806 5.76138 6.01527 6.39455 6.47753 6.56135 6.69860 7.15358 7.33755 8.83661 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.002226 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.398563 B =12575.695334 C =13094.580976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.397 3.603 3 O -0.507 6.507 4 C -0.196 4.196 5 C -0.013 4.013 6 C -0.133 4.133 7 C -0.035 4.035 8 C -0.156 4.156 9 C 0.506 3.494 10 O -0.527 6.527 11 O -0.334 6.334 12 C 0.080 3.920 13 H 0.119 0.881 14 C -0.159 4.159 15 C 0.504 3.496 16 O -0.574 6.574 17 N -0.600 5.600 18 C 0.066 3.934 19 C 0.258 3.742 20 C -0.543 4.543 21 H 0.059 0.941 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.270 1.270 27 H -0.282 1.282 28 C -0.015 4.015 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.141 0.859 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.002 0.998 43 H 0.268 0.732 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.668 14.595 -6.836 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.278 3.722 3 O -0.385 6.385 4 C -0.197 4.197 5 C -0.030 4.030 6 C -0.150 4.150 7 C -0.053 4.053 8 C -0.157 4.157 9 C 0.352 3.648 10 O -0.417 6.417 11 O -0.249 6.249 12 C 0.022 3.978 13 H 0.136 0.864 14 C -0.216 4.216 15 C 0.290 3.710 16 O -0.453 6.453 17 N -0.332 5.332 18 C -0.076 4.076 19 C 0.138 3.862 20 C -0.581 4.581 21 H 0.077 0.923 22 C -0.192 4.192 23 N -0.567 5.567 24 Si 0.794 3.206 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.208 1.208 28 C -0.034 4.034 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.209 0.791 33 H 0.195 0.805 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.020 0.980 43 H 0.077 0.923 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.413 14.798 -6.604 27.658 hybrid contribution 1.306 -0.715 -0.139 1.495 sum -21.108 14.083 -6.743 26.255 Atomic orbital electron populations 1.22304 0.89119 1.06820 1.06673 1.23205 0.93870 0.86178 0.68965 1.90571 1.73488 1.35733 1.38737 1.20727 0.92755 0.97144 1.09110 1.22289 1.02858 0.89405 0.88495 1.21641 0.92481 1.00683 1.00203 1.22030 0.96242 0.96993 0.90074 1.19007 0.87861 0.95969 1.12828 1.21689 0.89905 0.81292 0.71889 1.90798 1.70048 1.33525 1.47377 1.86654 1.21169 1.33614 1.83503 1.22593 0.77375 0.97788 1.00063 0.86363 1.22171 1.03444 1.04328 0.91645 1.20507 0.82502 0.88475 0.79494 1.90647 1.59248 1.38082 1.57359 1.48060 1.10342 1.14885 1.59909 1.22155 0.96807 0.85698 1.02903 1.18888 0.92328 0.81561 0.93449 1.21716 1.36846 1.05339 0.94244 0.92311 1.25883 0.96494 0.98704 0.98143 1.70064 1.44882 1.22605 1.19195 0.85329 0.78155 0.78118 0.78980 1.18866 1.19565 1.20773 1.21457 0.94639 0.96669 0.90608 0.86208 0.89108 0.86097 0.79073 0.80529 0.84138 0.91329 0.88356 0.89076 0.91046 0.89927 0.89179 0.95214 0.98032 0.92348 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.80 9.75 71.24 0.69 -0.10 16 2 C 0.40 6.08 7.23 28.04 0.20 6.28 16 3 O -0.51 -12.82 17.09 -2.95 -0.05 -12.87 16 4 C -0.20 -3.09 5.86 -20.18 -0.12 -3.21 16 5 C -0.01 -0.10 9.36 22.63 0.21 0.11 16 6 C -0.13 -1.40 10.01 22.19 0.22 -1.18 16 7 C -0.04 -0.68 9.61 22.61 0.22 -0.46 16 8 C -0.16 -3.88 5.87 -20.14 -0.12 -4.00 16 9 C 0.51 15.77 7.87 70.34 0.55 16.32 16 10 O -0.53 -17.98 15.60 19.93 0.31 -17.67 16 11 O -0.33 -11.46 8.71 -49.94 -0.43 -11.89 16 12 C 0.08 2.70 2.14 29.85 0.06 2.77 16 13 H 0.12 3.63 6.32 -2.39 -0.02 3.62 16 14 C -0.16 -4.41 9.19 71.98 0.66 -3.75 16 15 C 0.50 22.09 6.95 87.66 0.61 22.70 16 16 O -0.57 -30.67 16.13 15.23 0.25 -30.42 16 17 N -0.60 -25.94 2.86 -851.13 -2.43 -28.37 16 18 C 0.07 2.03 9.79 127.77 1.25 3.28 16 19 C 0.26 13.93 5.18 85.64 0.44 14.38 16 20 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 21 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 22 C 0.01 0.39 5.46 84.65 0.46 0.85 16 23 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 24 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 28 C -0.02 -0.35 9.14 22.85 0.21 -0.14 16 29 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 -0.30 6.46 -2.38 -0.02 -0.32 16 32 H 0.19 -0.43 6.34 -2.91 -0.02 -0.45 16 33 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 34 H 0.14 2.98 7.60 -2.91 -0.02 2.96 16 35 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.10 2.51 6.33 -2.39 -0.02 2.50 16 37 H 0.09 2.16 8.14 -2.38 -0.02 2.15 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.53 8.03 -2.39 -0.02 2.52 16 40 H 0.09 2.21 4.92 -2.39 -0.01 2.20 16 41 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 42 H 0.00 0.10 7.36 -2.39 -0.02 0.08 16 43 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.12 3.41 7.23 -2.91 -0.02 3.39 16 Total: -1.00 -85.06 380.87 6.79 -78.28 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 5.81 Total: 23.29 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.15 Total: -83.74 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: 0.07 Total: -72.85 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -85.06 6.79 -78.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767435345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.359 kcal (2) G-P(sol) polarization free energy of solvation -85.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds