Wall clock time and date at job start Tue Mar 31 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.87693 * 2 1 4 4 O 1.43751 * 110.00252 * 238.91533 * 2 1 3 5 5 C 1.44377 * 106.97564 * 267.01728 * 4 2 1 6 6 C 1.55225 * 103.56903 * 320.01333 * 5 4 2 7 7 C 1.54103 * 109.88203 * 121.01063 * 2 1 3 8 8 H 1.08997 * 110.48234 * 358.73380 * 7 2 1 9 9 C 1.50702 * 110.48601 * 236.21814 * 7 2 1 10 10 O 1.20821 * 120.00179 * 2.12105 * 9 7 2 11 11 O 1.34234 * 119.99681 * 181.84176 * 9 7 2 12 12 C 1.45203 * 116.99895 * 180.02562 * 11 9 7 13 13 C 1.50691 * 109.46961 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00124 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00050 * 180.02562 * 13 12 11 16 16 C 1.37139 * 119.99894 * 354.95133 * 15 13 12 17 17 H 1.08007 * 119.99810 * 332.87175 * 16 15 13 18 18 C 1.38888 * 120.00386 * 152.87068 * 16 15 13 19 19 N 1.31421 * 120.00169 * 157.85807 * 18 16 15 20 20 Si 1.86798 * 120.00026 * 337.86797 * 18 16 15 21 21 H 1.48499 * 109.47322 * 85.73120 * 20 18 16 22 22 H 1.48494 * 109.47219 * 205.73575 * 20 18 16 23 23 H 1.48500 * 109.46852 * 325.73584 * 20 18 16 24 24 C 1.39790 * 120.00293 * 174.95266 * 15 13 12 25 25 C 1.38959 * 120.07583 * 297.86037 * 24 15 13 26 26 C 1.38080 * 119.92023 * 179.70116 * 25 24 15 27 27 C 1.38308 * 120.07599 * 0.57061 * 26 25 24 28 28 C 1.38307 * 120.15676 * 359.72763 * 27 26 25 29 29 C 1.38074 * 120.07709 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46640 * 298.99118 * 1 2 3 31 31 H 1.08993 * 109.47557 * 58.98795 * 1 2 3 32 32 H 1.08996 * 109.46958 * 178.99260 * 1 2 3 33 33 H 1.09003 * 110.61591 * 78.43639 * 5 4 2 34 34 H 1.08995 * 110.61804 * 201.43633 * 5 4 2 35 35 H 1.09003 * 110.88764 * 278.74559 * 6 5 4 36 36 H 1.08997 * 111.02768 * 155.07148 * 6 5 4 37 37 H 1.08997 * 109.46494 * 300.00024 * 12 11 9 38 38 H 1.09002 * 109.46799 * 59.99942 * 12 11 9 39 39 H 0.96996 * 120.00183 * 180.02562 * 19 18 16 40 40 H 1.08009 * 120.03911 * 359.97438 * 25 24 15 41 41 H 1.08003 * 119.96523 * 180.29779 * 26 25 24 42 42 H 1.07998 * 119.92043 * 179.74750 * 27 26 25 43 43 H 1.08006 * 119.95939 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.04111 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2334 -2.0702 -0.7630 6 6 2.8350 -1.9514 0.6630 7 6 2.0540 -0.7466 1.2421 8 1 1.2238 -1.0909 1.8586 9 6 2.9716 0.1410 2.0429 10 8 3.1674 1.2806 1.6923 11 8 3.5669 -0.3327 3.1488 12 6 4.4371 0.5784 3.8707 13 6 5.0120 -0.1236 5.0738 14 8 4.7170 -1.2779 5.3009 15 7 5.8532 0.5316 5.8982 16 6 6.2675 1.8014 5.5872 17 1 6.3092 2.1183 4.5556 18 6 6.6336 2.6798 6.5989 19 7 7.4193 3.6989 6.3318 20 14 6.0095 2.4125 8.3391 21 1 6.9102 1.4688 9.0486 22 1 5.9845 3.7101 9.0607 23 1 4.6376 1.8461 8.2913 24 6 6.3033 -0.0831 7.0702 25 6 5.3965 -0.4468 8.0583 26 6 5.8440 -1.0594 9.2121 27 6 7.1943 -1.3004 9.3900 28 6 8.1003 -0.9340 8.4113 29 6 7.6592 -0.3266 7.2524 30 1 -0.3633 0.4981 0.8989 31 1 -0.3634 0.5294 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 1.2877 -2.6116 -0.7348 34 1 2.9366 -2.5589 -1.4373 35 1 3.9028 -1.7373 0.6177 36 1 2.6449 -2.8537 1.2441 37 1 5.2475 0.9011 3.2171 38 1 3.8644 1.4470 4.1955 39 1 7.6753 4.3121 7.0384 40 1 4.3424 -0.2546 7.9221 41 1 5.1393 -1.3468 9.9784 42 1 7.5419 -1.7760 10.2951 43 1 9.1540 -1.1240 8.5534 44 1 8.3672 -0.0412 6.4884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771078072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:40 Heat of formation + Delta-G solvation = -136.026272 kcal Electronic energy + Delta-G solvation = -28808.529220 eV Core-core repulsion = 24691.195671 eV Total energy + Delta-G solvation = -4117.333548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17828 -41.56883 -40.23659 -39.30813 -37.61775 -36.81292 -34.18884 -33.78745 -32.24091 -31.90211 -31.54260 -29.49811 -27.88553 -27.03403 -24.28304 -23.56704 -23.37134 -22.77941 -21.31234 -21.13930 -19.93683 -19.23643 -18.21687 -17.91527 -17.85110 -17.63139 -17.14711 -16.94405 -16.61390 -16.38100 -15.75939 -15.54111 -15.35254 -15.14035 -14.78397 -14.59265 -14.36269 -14.34537 -14.20951 -13.92217 -13.89015 -13.52898 -13.15698 -12.92348 -12.88339 -12.65235 -12.51103 -12.49606 -12.21074 -12.04729 -11.97149 -11.93043 -11.84359 -11.62623 -11.27353 -10.82193 -10.68354 -10.39901 -9.84323 -9.43641 -8.66120 -6.27257 0.28486 0.44324 0.95627 1.17009 1.23430 1.32746 1.39242 1.58033 2.16410 2.44436 2.73496 2.80395 2.96786 3.31358 3.45649 3.65320 3.70767 3.96024 3.98346 4.04296 4.05603 4.08622 4.17120 4.22307 4.25116 4.36396 4.52773 4.53134 4.63378 4.64794 4.66150 4.80640 4.88407 4.96370 5.07288 5.08360 5.21345 5.24923 5.26180 5.46703 5.54480 5.55990 5.81742 5.85561 5.94213 6.21476 6.47746 6.72219 7.13106 7.46780 8.44409 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.003059 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.788477 B = 9151.908190 C = 9900.396908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 H 0.090 0.910 4 O -0.390 6.390 5 C 0.046 3.954 6 C -0.142 4.142 7 C -0.109 4.109 8 H 0.151 0.849 9 C 0.465 3.535 10 O -0.531 6.531 11 O -0.339 6.339 12 C 0.079 3.921 13 C 0.477 3.523 14 O -0.582 6.582 15 N -0.421 5.421 16 C -0.366 4.366 17 H 0.096 0.904 18 C 0.050 3.950 19 N -0.880 5.880 20 Si 0.910 3.090 21 H -0.237 1.237 22 H -0.294 1.294 23 H -0.264 1.264 24 C 0.121 3.879 25 C -0.147 4.147 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.110 4.110 29 C -0.132 4.132 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.283 0.717 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 -11.489 -3.275 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.108 0.892 4 O -0.309 6.309 5 C -0.030 4.030 6 C -0.180 4.180 7 C -0.128 4.128 8 H 0.169 0.831 9 C 0.309 3.691 10 O -0.420 6.420 11 O -0.254 6.254 12 C 0.002 3.998 13 C 0.267 3.733 14 O -0.466 6.466 15 N -0.138 5.138 16 C -0.492 4.492 17 H 0.114 0.886 18 C -0.158 4.158 19 N -0.515 5.515 20 Si 0.735 3.265 21 H -0.161 1.161 22 H -0.222 1.222 23 H -0.189 1.189 24 C 0.030 3.970 25 C -0.167 4.167 26 C -0.133 4.133 27 C -0.142 4.142 28 C -0.128 4.128 29 C -0.152 4.152 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.173 0.827 42 H 0.182 0.818 43 H 0.173 0.827 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.728 -11.429 -3.438 14.786 hybrid contribution 0.123 1.034 0.627 1.216 sum -8.605 -10.395 -2.811 13.784 Atomic orbital electron populations 1.22227 0.92241 1.04016 1.03495 1.22831 0.95985 0.96905 0.82392 0.89168 1.88931 1.86312 1.22474 1.33215 1.23859 1.01701 0.83467 0.93982 1.23236 0.99763 0.97254 0.97724 1.22702 0.97861 0.95577 0.96664 0.83128 1.24215 0.78865 0.87332 0.78667 1.90658 1.61395 1.21060 1.68921 1.86500 1.56714 1.44578 1.37599 1.22396 0.94026 0.91238 0.92119 1.20134 0.80000 0.87047 0.86099 1.90585 1.62065 1.17925 1.76004 1.41392 1.39323 1.14176 1.18885 1.19105 1.47508 0.87014 0.95546 0.88637 1.25653 0.93831 0.94443 1.01825 1.69813 1.29234 1.16051 1.36371 0.86382 0.81395 0.77587 0.81150 1.16090 1.22200 1.18880 1.17970 0.93799 0.97352 0.87883 1.21290 0.98952 1.01742 0.94694 1.21345 0.97422 0.98027 0.96542 1.21552 0.92438 1.00062 1.00182 1.21392 1.01471 0.97430 0.92543 1.21304 0.94243 0.99846 0.99773 0.90633 0.91058 0.90182 0.88968 0.87097 0.91634 0.86398 0.88825 0.88027 0.90657 0.87556 0.82747 0.81785 0.82701 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.31 71.98 0.67 -1.92 16 2 C 0.08 1.74 3.70 30.97 0.11 1.85 16 3 H 0.09 2.55 6.44 -2.39 -0.02 2.53 16 4 O -0.39 -9.17 11.20 -148.98 -1.67 -10.84 16 5 C 0.05 0.73 7.67 72.75 0.56 1.29 16 6 C -0.14 -2.74 6.71 31.98 0.21 -2.53 16 7 C -0.11 -2.47 3.17 -10.55 -0.03 -2.51 16 8 H 0.15 2.57 7.70 -2.39 -0.02 2.55 16 9 C 0.47 15.32 7.14 71.24 0.51 15.83 16 10 O -0.53 -20.40 15.01 21.98 0.33 -20.07 16 11 O -0.34 -12.83 9.75 -45.10 -0.44 -13.27 16 12 C 0.08 3.32 4.62 71.23 0.33 3.65 16 13 C 0.48 22.75 7.53 87.65 0.66 23.41 16 14 O -0.58 -29.52 16.07 15.77 0.25 -29.27 16 15 N -0.42 -20.65 2.49 -458.90 -1.14 -21.79 16 16 C -0.37 -19.22 9.12 84.02 0.77 -18.46 16 17 H 0.10 5.24 6.90 -2.91 -0.02 5.22 16 18 C 0.05 2.62 5.20 84.91 0.44 3.06 16 19 N -0.88 -48.40 13.96 21.65 0.30 -48.10 16 20 Si 0.91 41.74 23.47 68.60 1.61 43.35 16 21 H -0.24 -10.21 5.27 99.48 0.52 -9.68 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.26 -12.14 6.11 99.48 0.61 -11.53 16 24 C 0.12 5.49 2.29 38.22 0.09 5.58 16 25 C -0.15 -6.06 5.86 22.41 0.13 -5.93 16 26 C -0.12 -3.71 9.55 22.25 0.21 -3.50 16 27 C -0.12 -3.55 9.74 22.30 0.22 -3.33 16 28 C -0.11 -3.54 9.63 22.25 0.21 -3.32 16 29 C -0.13 -5.45 8.48 22.40 0.19 -5.26 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 0.96 8.13 -2.39 -0.02 0.95 16 33 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.53 7.86 -2.39 -0.02 1.51 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 3.95 7.48 -2.39 -0.02 3.94 16 38 H 0.10 4.24 8.13 -2.39 -0.02 4.22 16 39 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.11 4.55 7.71 -2.91 -0.02 4.53 16 41 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -70.11 361.76 5.25 -64.86 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.73 Total: 27.21 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.28 Total: 7.91 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.84 Total: -69.89 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -1.52 Total: -73.45 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.61 Total: 43.35 kcal Total: -70.11 5.25 -64.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771078072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.165 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds