Wall clock time and date at job start Tue Mar 31 2020 17:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89751 * 2 1 4 4 O 1.43233 * 109.82802 * 120.93730 * 2 1 3 5 5 C 1.43647 * 109.97431 * 117.80380 * 4 2 1 6 6 C 1.54945 * 105.13594 * 24.42265 * 5 4 2 7 7 C 1.54379 * 109.83020 * 239.06864 * 2 1 3 8 8 H 1.09006 * 110.84793 * 337.32409 * 7 2 1 9 9 C 1.50697 * 111.02354 * 100.86112 * 7 2 1 10 10 O 1.20823 * 119.99908 * 354.38804 * 9 7 2 11 11 O 1.34231 * 119.99977 * 174.38431 * 9 7 2 12 12 C 1.45198 * 116.99616 * 179.97438 * 11 9 7 13 13 C 1.50710 * 109.46973 * 180.02562 * 12 11 9 14 14 O 1.21273 * 119.99548 * 354.99021 * 13 12 11 15 15 N 1.34778 * 119.99991 * 174.99289 * 13 12 11 16 16 C 1.37140 * 119.99803 * 5.99859 * 15 13 12 17 17 H 1.08002 * 119.99994 * 53.63426 * 16 15 13 18 18 C 1.38892 * 120.00082 * 233.62190 * 16 15 13 19 19 N 1.31430 * 119.99685 * 5.47785 * 18 16 15 20 20 Si 1.86800 * 120.00196 * 185.47096 * 18 16 15 21 21 H 1.48501 * 109.46743 * 90.00472 * 20 18 16 22 22 H 1.48496 * 109.47248 * 210.00596 * 20 18 16 23 23 H 1.48499 * 109.46975 * 330.00635 * 20 18 16 24 24 C 1.39781 * 119.99741 * 186.00519 * 15 13 12 25 25 C 1.38964 * 120.08217 * 8.28063 * 24 15 13 26 26 C 1.38084 * 119.92204 * 179.74914 * 25 24 15 27 27 C 1.38305 * 120.07918 * 0.55033 * 26 25 24 28 28 C 1.38306 * 120.15488 * 359.70090 * 27 26 25 29 29 C 1.38082 * 120.07814 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47345 * 300.52214 * 1 2 3 31 31 H 1.09007 * 109.47139 * 60.51570 * 1 2 3 32 32 H 1.09002 * 109.47223 * 180.51614 * 1 2 3 33 33 H 1.08999 * 110.31308 * 143.33931 * 5 4 2 34 34 H 1.09005 * 110.30474 * 265.51029 * 5 4 2 35 35 H 1.09000 * 111.12544 * 81.47581 * 6 5 4 36 36 H 1.09000 * 111.12579 * 205.60028 * 6 5 4 37 37 H 1.08998 * 109.47791 * 299.99973 * 12 11 9 38 38 H 1.09003 * 109.47478 * 60.00565 * 12 11 9 39 39 H 0.97003 * 119.99379 * 184.99256 * 19 18 16 40 40 H 1.08004 * 120.03286 * 359.97438 * 25 24 15 41 41 H 1.08001 * 119.95736 * 180.29452 * 26 25 24 42 42 H 1.07997 * 119.92321 * 179.72348 * 27 26 25 43 43 H 1.08004 * 119.95890 * 180.02562 * 28 27 26 44 44 H 1.08004 * 120.03773 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0159 -0.6927 1.1557 5 6 2.7747 -1.8445 0.7545 6 6 3.2730 -1.5222 -0.6768 7 6 2.0537 -0.7465 -1.2457 8 1 1.3011 -1.4348 -1.6304 9 6 2.4865 0.2233 -2.3149 10 8 2.3019 1.4081 -2.1664 11 8 3.0770 -0.2291 -3.4322 12 6 3.4669 0.7619 -4.4193 13 6 4.1084 0.0731 -5.5963 14 8 4.3081 -1.1226 -5.5640 15 7 4.4603 0.7861 -6.6846 16 6 4.3487 2.1529 -6.6743 17 1 4.8150 2.7269 -5.8871 18 6 3.6364 2.7991 -7.6764 19 7 2.9797 2.0974 -8.5729 20 14 3.6117 4.6655 -7.7499 21 1 4.7410 5.1428 -8.5879 22 1 2.3285 5.1206 -8.3426 23 1 3.7462 5.2167 -6.3776 24 6 4.9387 0.1323 -7.8237 25 6 4.8918 -1.2543 -7.9023 26 6 5.3605 -1.8964 -9.0313 27 6 5.8867 -1.1619 -10.0784 28 6 5.9397 0.2180 -10.0015 29 6 5.4676 0.8671 -8.8779 30 1 -0.3634 0.5219 0.8853 31 1 -0.3634 0.5058 -0.8946 32 1 -0.3634 -1.0276 0.0093 33 1 3.6209 -1.9926 1.4253 34 1 2.1400 -2.7306 0.7436 35 1 4.1620 -0.8921 -0.6507 36 1 3.4578 -2.4349 -1.2433 37 1 2.5848 1.3074 -4.7546 38 1 4.1773 1.4584 -3.9740 39 1 2.5425 2.5451 -9.3141 40 1 4.4858 -1.8288 -7.0827 41 1 5.3199 -2.9738 -9.0950 42 1 6.2567 -1.6670 -10.9584 43 1 6.3509 0.7885 -10.8212 44 1 5.5090 1.9447 -8.8186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771078077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:47 Heat of formation + Delta-G solvation = -121.303092 kcal Electronic energy + Delta-G solvation = -28764.457917 eV Core-core repulsion = 24647.762814 eV Total energy + Delta-G solvation = -4116.695103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85700 -39.82789 -39.07214 -37.32347 -36.12459 -35.09304 -32.84681 -32.02156 -31.66872 -29.86523 -29.65290 -27.75390 -26.56435 -25.28241 -23.14364 -22.06038 -21.68308 -21.23176 -20.20642 -19.60333 -18.08667 -17.98571 -16.74794 -16.62264 -16.21715 -15.97817 -15.59639 -15.39632 -14.99442 -14.61359 -14.51479 -14.18175 -13.96697 -13.65378 -13.16134 -13.14631 -12.86681 -12.81461 -12.42228 -12.32953 -12.17305 -12.15595 -11.75255 -11.68137 -11.58937 -11.35335 -11.20553 -11.16945 -11.10929 -10.86264 -10.53780 -10.40004 -10.38020 -10.10488 -9.72236 -9.36915 -8.91238 -8.40024 -7.86871 -7.00736 -6.42848 -4.65862 2.23467 2.31760 2.49100 2.56059 2.98687 3.08230 3.10416 3.52670 3.56870 3.87198 4.13151 4.27682 4.44828 4.65490 4.69916 4.82431 4.94191 5.05354 5.09833 5.17648 5.37861 5.41160 5.49554 5.50897 5.65056 5.68847 5.73485 5.81354 5.84204 5.93307 5.95954 6.00948 6.09911 6.57875 6.60196 6.64793 6.77618 6.78967 7.03186 7.14868 7.41491 7.52892 7.55937 7.65740 7.82322 7.96363 8.30174 8.72372 9.04790 9.43786 10.37778 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003293 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.510686 B = 8501.067349 C =10096.602853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.088 3.912 3 H 0.101 0.899 4 O -0.376 6.376 5 C 0.051 3.949 6 C -0.144 4.144 7 C -0.115 4.115 8 H 0.124 0.876 9 C 0.471 3.529 10 O -0.504 6.504 11 O -0.332 6.332 12 C 0.071 3.929 13 C 0.492 3.508 14 O -0.549 6.549 15 N -0.378 5.378 16 C -0.383 4.383 17 H 0.096 0.904 18 C 0.060 3.940 19 N -0.836 5.836 20 Si 0.917 3.083 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.263 1.263 24 C 0.194 3.806 25 C -0.181 4.181 26 C -0.117 4.117 27 C -0.172 4.172 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.277 0.723 40 H 0.165 0.835 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -4.358 10.046 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.119 0.881 4 O -0.296 6.296 5 C -0.025 4.025 6 C -0.181 4.181 7 C -0.134 4.134 8 H 0.142 0.858 9 C 0.313 3.687 10 O -0.393 6.393 11 O -0.247 6.247 12 C -0.005 4.005 13 C 0.283 3.717 14 O -0.432 6.432 15 N -0.087 5.087 16 C -0.510 4.510 17 H 0.113 0.887 18 C -0.151 4.151 19 N -0.467 5.467 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.188 1.188 24 C 0.098 3.902 25 C -0.201 4.201 26 C -0.136 4.136 27 C -0.191 4.191 28 C -0.138 4.138 29 C -0.126 4.126 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.181 0.819 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.364 -4.454 10.211 11.224 hybrid contribution -0.137 1.210 -0.823 1.470 sum -1.500 -3.244 9.388 10.046 Atomic orbital electron populations 1.22135 0.94087 1.02595 1.03023 1.22692 0.94856 0.97074 0.82288 0.88124 1.88458 1.71002 1.40496 1.29618 1.23404 0.95328 0.89079 0.94708 1.23272 0.96939 1.01738 0.96187 1.22624 1.00415 0.97108 0.93291 0.85788 1.23072 0.74756 0.88573 0.82251 1.90676 1.52131 1.17908 1.78549 1.86470 1.69678 1.40972 1.27574 1.22632 1.01969 0.89092 0.86781 1.20187 0.80151 0.86428 0.84960 1.90333 1.56386 1.15013 1.81437 1.40837 1.51788 1.06758 1.09288 1.19413 1.35956 0.79691 1.15902 0.88665 1.25637 0.92904 1.00595 0.95998 1.69963 1.27906 1.37032 1.11777 0.86062 0.78259 0.82041 0.79419 1.19650 1.20404 1.18758 1.18124 0.92936 0.90796 0.88326 1.22363 1.03141 0.94033 1.00523 1.20841 1.00251 0.98546 0.93922 1.20778 1.05280 0.94210 0.98873 1.20738 1.01341 0.94215 0.97514 1.20755 0.98872 1.00099 0.92824 0.91407 0.91073 0.92089 0.89162 0.91670 0.89595 0.88081 0.87695 0.88714 0.91271 0.81860 0.87592 0.88030 0.87648 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.44 37.16 0.35 -1.26 16 2 C 0.09 1.03 3.58 -26.01 -0.09 0.94 16 3 H 0.10 1.33 6.88 -51.93 -0.36 0.97 16 4 O -0.38 -4.41 11.02 -35.23 -0.39 -4.80 16 5 C 0.05 0.46 7.78 38.18 0.30 0.75 16 6 C -0.14 -1.45 6.59 -24.48 -0.16 -1.61 16 7 C -0.12 -1.35 3.02 -89.83 -0.27 -1.62 16 8 H 0.12 1.25 7.85 -51.93 -0.41 0.84 16 9 C 0.47 7.42 7.27 36.00 0.26 7.68 16 10 O -0.50 -8.96 15.24 -18.75 -0.29 -9.25 16 11 O -0.33 -6.04 9.75 -45.89 -0.45 -6.48 16 12 C 0.07 1.42 4.77 36.01 0.17 1.59 16 13 C 0.49 11.43 7.61 -10.98 -0.08 11.35 16 14 O -0.55 -13.38 13.03 -14.05 -0.18 -13.56 16 15 N -0.38 -9.22 2.66 -58.97 -0.16 -9.37 16 16 C -0.38 -9.11 7.40 -14.93 -0.11 -9.22 16 17 H 0.10 2.15 7.78 -52.49 -0.41 1.74 16 18 C 0.06 1.42 3.85 -17.48 -0.07 1.35 16 19 N -0.84 -21.15 11.62 55.49 0.64 -20.50 16 20 Si 0.92 18.30 29.56 -169.99 -5.02 13.27 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C 0.19 4.76 5.71 -83.70 -0.48 4.28 16 25 C -0.18 -4.22 8.97 -39.37 -0.35 -4.58 16 26 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 27 C -0.17 -3.33 10.04 -39.53 -0.40 -3.73 16 28 C -0.12 -2.43 10.04 -39.61 -0.40 -2.82 16 29 C -0.10 -2.43 7.86 -39.37 -0.31 -2.74 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.11 2.13 8.04 -51.93 -0.42 1.71 16 38 H 0.09 1.76 8.07 -51.93 -0.42 1.35 16 39 H 0.28 6.64 8.32 -40.82 -0.34 6.30 16 40 H 0.16 3.97 4.75 -55.00 -0.26 3.71 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 44 H 0.12 2.93 6.02 -52.48 -0.32 2.62 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -28.96 366.91 -8.30 -37.26 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.95 Total: 10.30 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.04 Total: -2.39 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.49 Total: -29.88 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.30 Total: -34.09 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.96 -8.30 -37.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771078077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.044 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds