Wall clock time and date at job start Tue Mar 31 2020 17:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89751 * 2 1 4 4 O 1.43233 * 109.82802 * 120.93730 * 2 1 3 5 5 C 1.43647 * 109.97431 * 117.80380 * 4 2 1 6 6 C 1.54945 * 105.13594 * 24.42265 * 5 4 2 7 7 C 1.54379 * 109.83020 * 239.06864 * 2 1 3 8 8 H 1.09006 * 110.84793 * 337.32409 * 7 2 1 9 9 C 1.50697 * 111.02354 * 100.86112 * 7 2 1 10 10 O 1.20823 * 119.99908 * 354.38804 * 9 7 2 11 11 O 1.34231 * 119.99977 * 174.38431 * 9 7 2 12 12 C 1.45198 * 116.99616 * 179.97438 * 11 9 7 13 13 C 1.50710 * 109.46973 * 180.02562 * 12 11 9 14 14 O 1.21273 * 119.99548 * 354.99021 * 13 12 11 15 15 N 1.34778 * 119.99991 * 174.99289 * 13 12 11 16 16 C 1.37140 * 119.99803 * 5.99859 * 15 13 12 17 17 H 1.08002 * 119.99994 * 53.63426 * 16 15 13 18 18 C 1.38892 * 120.00082 * 233.62190 * 16 15 13 19 19 N 1.31430 * 119.99685 * 5.47785 * 18 16 15 20 20 Si 1.86800 * 120.00196 * 185.47096 * 18 16 15 21 21 H 1.48501 * 109.46743 * 90.00472 * 20 18 16 22 22 H 1.48496 * 109.47248 * 210.00596 * 20 18 16 23 23 H 1.48499 * 109.46975 * 330.00635 * 20 18 16 24 24 C 1.39781 * 119.99741 * 186.00519 * 15 13 12 25 25 C 1.38964 * 120.08217 * 8.28063 * 24 15 13 26 26 C 1.38084 * 119.92204 * 179.74914 * 25 24 15 27 27 C 1.38305 * 120.07918 * 0.55033 * 26 25 24 28 28 C 1.38306 * 120.15488 * 359.70090 * 27 26 25 29 29 C 1.38082 * 120.07814 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47345 * 300.52214 * 1 2 3 31 31 H 1.09007 * 109.47139 * 60.51570 * 1 2 3 32 32 H 1.09002 * 109.47223 * 180.51614 * 1 2 3 33 33 H 1.08999 * 110.31308 * 143.33931 * 5 4 2 34 34 H 1.09005 * 110.30474 * 265.51029 * 5 4 2 35 35 H 1.09000 * 111.12544 * 81.47581 * 6 5 4 36 36 H 1.09000 * 111.12579 * 205.60028 * 6 5 4 37 37 H 1.08998 * 109.47791 * 299.99973 * 12 11 9 38 38 H 1.09003 * 109.47478 * 60.00565 * 12 11 9 39 39 H 0.97003 * 119.99379 * 184.99256 * 19 18 16 40 40 H 1.08004 * 120.03286 * 359.97438 * 25 24 15 41 41 H 1.08001 * 119.95736 * 180.29452 * 26 25 24 42 42 H 1.07997 * 119.92321 * 179.72348 * 27 26 25 43 43 H 1.08004 * 119.95890 * 180.02562 * 28 27 26 44 44 H 1.08004 * 120.03773 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0159 -0.6927 1.1557 5 6 2.7747 -1.8445 0.7545 6 6 3.2730 -1.5222 -0.6768 7 6 2.0537 -0.7465 -1.2457 8 1 1.3011 -1.4348 -1.6304 9 6 2.4865 0.2233 -2.3149 10 8 2.3019 1.4081 -2.1664 11 8 3.0770 -0.2291 -3.4322 12 6 3.4669 0.7619 -4.4193 13 6 4.1084 0.0731 -5.5963 14 8 4.3081 -1.1226 -5.5640 15 7 4.4603 0.7861 -6.6846 16 6 4.3487 2.1529 -6.6743 17 1 4.8150 2.7269 -5.8871 18 6 3.6364 2.7991 -7.6764 19 7 2.9797 2.0974 -8.5729 20 14 3.6117 4.6655 -7.7499 21 1 4.7410 5.1428 -8.5879 22 1 2.3285 5.1206 -8.3426 23 1 3.7462 5.2167 -6.3776 24 6 4.9387 0.1323 -7.8237 25 6 4.8918 -1.2543 -7.9023 26 6 5.3605 -1.8964 -9.0313 27 6 5.8867 -1.1619 -10.0784 28 6 5.9397 0.2180 -10.0015 29 6 5.4676 0.8671 -8.8779 30 1 -0.3634 0.5219 0.8853 31 1 -0.3634 0.5058 -0.8946 32 1 -0.3634 -1.0276 0.0093 33 1 3.6209 -1.9926 1.4253 34 1 2.1400 -2.7306 0.7436 35 1 4.1620 -0.8921 -0.6507 36 1 3.4578 -2.4349 -1.2433 37 1 2.5848 1.3074 -4.7546 38 1 4.1773 1.4584 -3.9740 39 1 2.5425 2.5451 -9.3141 40 1 4.4858 -1.8288 -7.0827 41 1 5.3199 -2.9738 -9.0950 42 1 6.2567 -1.6670 -10.9584 43 1 6.3509 0.7885 -10.8212 44 1 5.5090 1.9447 -8.8186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771078077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:46 Heat of formation + Delta-G solvation = -135.763360 kcal Electronic energy + Delta-G solvation = -28765.084961 eV Core-core repulsion = 24647.762814 eV Total energy + Delta-G solvation = -4117.322148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13581 -41.45946 -40.18447 -38.97311 -37.57141 -36.87241 -33.84756 -33.80238 -32.47910 -31.51748 -31.30632 -29.23673 -27.61685 -27.07794 -24.27939 -23.45775 -22.97377 -22.66437 -21.40882 -21.29923 -19.72643 -19.25366 -18.04079 -17.96797 -17.76105 -17.39993 -17.12296 -16.91818 -16.35760 -16.10049 -15.78853 -15.46253 -15.15891 -14.83353 -14.78526 -14.59749 -14.38966 -14.03110 -13.94316 -13.63107 -13.51905 -13.30012 -13.24609 -13.05155 -12.95602 -12.83386 -12.53279 -12.47594 -12.14073 -12.04529 -11.97350 -11.90474 -11.75718 -11.62244 -11.13679 -10.66985 -10.55617 -10.17703 -9.54863 -8.79414 -8.21147 -6.52057 0.62233 0.79869 0.96135 1.18984 1.39377 1.44010 1.54205 1.83581 2.20873 2.62125 2.77392 2.87286 3.26760 3.33881 3.51116 3.59013 3.79479 3.93683 4.04492 4.09851 4.19401 4.23132 4.31944 4.32576 4.34792 4.57158 4.58339 4.66957 4.81153 4.88123 4.89755 4.95926 4.96496 5.08564 5.08813 5.20787 5.24374 5.29563 5.39168 5.75537 5.82063 5.86516 5.95085 5.97201 6.18913 6.47579 6.56345 6.90187 7.25432 7.63670 8.58303 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003293 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.510686 B = 8501.067349 C =10096.602853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 H 0.078 0.922 4 O -0.390 6.390 5 C 0.051 3.949 6 C -0.142 4.142 7 C -0.112 4.112 8 H 0.147 0.853 9 C 0.471 3.529 10 O -0.528 6.528 11 O -0.340 6.340 12 C 0.083 3.917 13 C 0.480 3.520 14 O -0.568 6.568 15 N -0.389 5.389 16 C -0.393 4.393 17 H 0.101 0.899 18 C 0.028 3.972 19 N -0.870 5.870 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.257 1.257 24 C 0.162 3.838 25 C -0.206 4.206 26 C -0.116 4.116 27 C -0.163 4.163 28 C -0.119 4.119 29 C -0.123 4.123 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.277 0.723 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -5.094 9.803 11.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.096 0.904 4 O -0.310 6.310 5 C -0.024 4.024 6 C -0.180 4.180 7 C -0.131 4.131 8 H 0.164 0.836 9 C 0.314 3.686 10 O -0.417 6.417 11 O -0.256 6.256 12 C 0.007 3.993 13 C 0.271 3.729 14 O -0.452 6.452 15 N -0.099 5.099 16 C -0.520 4.520 17 H 0.119 0.881 18 C -0.181 4.181 19 N -0.502 5.502 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.181 1.181 24 C 0.067 3.933 25 C -0.226 4.226 26 C -0.135 4.135 27 C -0.182 4.182 28 C -0.138 4.138 29 C -0.144 4.144 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.078 -5.197 9.981 11.305 hybrid contribution -0.171 1.353 -0.759 1.561 sum -1.249 -3.844 9.223 10.069 Atomic orbital electron populations 1.22113 0.92733 1.03677 1.03006 1.22605 0.95877 0.95999 0.82238 0.90380 1.88443 1.71434 1.41524 1.29636 1.23602 0.96065 0.88818 0.93937 1.23321 0.95749 1.01742 0.97197 1.22796 1.01749 0.96616 0.91893 0.83568 1.23907 0.73629 0.89122 0.81892 1.90662 1.53003 1.19229 1.78788 1.86490 1.70280 1.40691 1.28107 1.22342 1.01469 0.89050 0.86440 1.20677 0.80115 0.86474 0.85600 1.90308 1.57258 1.15708 1.81964 1.41064 1.51999 1.07125 1.09687 1.19699 1.36121 0.79842 1.16314 0.88111 1.26349 0.92064 1.04397 0.95256 1.70074 1.28972 1.38680 1.12466 0.85119 0.78074 0.77011 0.79584 1.18924 1.20657 1.18115 1.18483 0.94284 0.91598 0.88980 1.22386 1.04725 0.93797 1.01656 1.21221 0.98950 1.00268 0.93018 1.21226 1.03490 0.93808 0.99632 1.21142 1.00190 0.95218 0.97202 1.20802 1.00182 0.99569 0.93847 0.90954 0.91584 0.90441 0.87527 0.89464 0.90676 0.86822 0.88507 0.87845 0.91344 0.83398 0.84536 0.83821 0.84619 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.44 71.98 0.68 -2.28 16 2 C 0.09 2.05 3.58 31.06 0.11 2.16 16 3 H 0.08 2.11 6.88 -2.39 -0.02 2.09 16 4 O -0.39 -8.58 11.02 -148.98 -1.64 -10.22 16 5 C 0.05 0.80 7.78 72.65 0.56 1.37 16 6 C -0.14 -2.69 6.59 32.05 0.21 -2.47 16 7 C -0.11 -2.53 3.02 -10.28 -0.03 -2.56 16 8 H 0.15 2.68 7.85 -2.38 -0.02 2.66 16 9 C 0.47 14.98 7.27 71.23 0.52 15.50 16 10 O -0.53 -19.19 15.24 21.97 0.33 -18.86 16 11 O -0.34 -12.65 9.75 -45.08 -0.44 -13.09 16 12 C 0.08 3.44 4.77 71.24 0.34 3.78 16 13 C 0.48 23.17 7.61 87.66 0.67 23.84 16 14 O -0.57 -28.75 13.03 15.74 0.21 -28.54 16 15 N -0.39 -19.66 2.66 -458.89 -1.22 -20.88 16 16 C -0.39 -19.18 7.40 84.02 0.62 -18.55 16 17 H 0.10 4.64 7.78 -2.91 -0.02 4.62 16 18 C 0.03 1.32 3.85 84.91 0.33 1.64 16 19 N -0.87 -44.85 11.62 21.65 0.25 -44.59 16 20 Si 0.98 37.65 29.56 68.60 2.03 39.68 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 24 C 0.16 8.14 5.71 38.22 0.22 8.36 16 25 C -0.21 -9.75 8.97 22.41 0.20 -9.55 16 26 C -0.12 -4.54 10.04 22.25 0.22 -4.31 16 27 C -0.16 -5.81 10.04 22.30 0.22 -5.58 16 28 C -0.12 -4.62 10.04 22.25 0.22 -4.40 16 29 C -0.12 -5.74 7.86 22.41 0.18 -5.56 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 4.11 8.04 -2.39 -0.02 4.09 16 38 H 0.10 4.00 8.07 -2.39 -0.02 3.98 16 39 H 0.28 13.50 8.32 -92.71 -0.77 12.73 16 40 H 0.15 7.44 4.75 -42.80 -0.20 7.23 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.11 5.32 6.02 -2.91 -0.02 5.31 16 Total: -1.00 -64.10 366.91 5.62 -58.48 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.83 Total: 36.66 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.27 Total: 1.36 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.97 Total: -65.48 kcal Atomic # 8 Polarization: -69.16 SS G_CDS: -1.54 Total: -70.70 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -64.10 5.62 -58.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771078077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.282 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds