Wall clock time and date at job start Tue Mar 31 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.87047 * 2 1 4 4 O 1.43752 * 109.87694 * 121.00658 * 2 1 3 5 5 C 1.44382 * 106.97233 * 146.08737 * 4 2 1 6 6 C 1.54992 * 103.49129 * 319.93840 * 5 4 2 7 7 C 1.54160 * 109.97835 * 238.90049 * 2 1 3 8 8 H 1.08997 * 110.48392 * 119.78653 * 7 2 1 9 9 C 1.50706 * 110.51958 * 357.12219 * 7 2 1 10 10 O 1.20824 * 119.99787 * 270.02993 * 9 7 2 11 11 O 1.34228 * 120.00245 * 90.02665 * 9 7 2 12 12 C 1.45193 * 117.00249 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47439 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99591 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00068 * 180.02562 * 13 12 11 16 16 C 1.37137 * 120.00101 * 4.88907 * 15 13 12 17 17 H 1.08001 * 119.99958 * 348.16573 * 16 15 13 18 18 C 1.38895 * 119.99618 * 168.16564 * 16 15 13 19 19 N 1.31418 * 120.00163 * 353.74469 * 18 16 15 20 20 Si 1.86800 * 119.99419 * 173.74075 * 18 16 15 21 21 H 1.48497 * 109.47284 * 60.00189 * 20 18 16 22 22 H 1.48509 * 109.46833 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47368 * 299.99491 * 20 18 16 24 24 C 1.39795 * 119.99509 * 184.89232 * 15 13 12 25 25 C 1.38957 * 120.07811 * 98.81348 * 24 15 13 26 26 C 1.38089 * 119.91712 * 179.74836 * 25 24 15 27 27 C 1.38299 * 120.07937 * 0.54128 * 26 25 24 28 28 C 1.38306 * 120.15805 * 359.70414 * 27 26 25 29 29 C 1.38081 * 120.07666 * 0.02747 * 28 27 26 30 30 H 1.09002 * 109.47194 * 305.28147 * 1 2 3 31 31 H 1.09000 * 109.47037 * 65.27588 * 1 2 3 32 32 H 1.08998 * 109.47177 * 185.27845 * 1 2 3 33 33 H 1.09001 * 110.61541 * 201.43583 * 5 4 2 34 34 H 1.09000 * 110.75151 * 78.50207 * 5 4 2 35 35 H 1.09000 * 110.90499 * 155.22725 * 6 5 4 36 36 H 1.09001 * 110.90894 * 278.79413 * 6 5 4 37 37 H 1.09004 * 109.47101 * 299.99779 * 12 11 9 38 38 H 1.08999 * 109.47041 * 60.00190 * 12 11 9 39 39 H 0.97002 * 119.99563 * 185.01521 * 19 18 16 40 40 H 1.07996 * 120.03943 * 359.97438 * 25 24 15 41 41 H 1.08005 * 119.95512 * 180.29535 * 26 25 24 42 42 H 1.08001 * 119.92193 * 179.73152 * 27 26 25 43 43 H 1.08005 * 119.96542 * 180.02562 * 28 27 26 44 44 H 1.08005 * 120.03824 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6964 1.1587 5 6 3.2398 -1.3602 0.7676 6 6 2.9244 -1.8889 -0.6549 7 6 2.0567 -0.7484 -1.2406 8 1 2.6638 -0.0852 -1.8569 9 6 0.9124 -1.3143 -2.0415 10 8 0.5027 -2.4265 -1.8070 11 8 0.3482 -0.5827 -3.0153 12 6 -0.7495 -1.1912 -3.7452 13 6 -1.2518 -0.2295 -4.7911 14 8 -0.7356 0.8616 -4.9093 15 7 -2.2752 -0.5815 -5.5943 16 6 -2.9249 -1.7726 -5.3950 17 1 -2.5054 -2.5116 -4.7284 18 6 -4.1224 -2.0285 -6.0504 19 7 -4.6957 -1.0854 -6.7638 20 14 -4.9180 -3.7134 -5.9179 21 1 -5.2183 -4.0085 -4.4939 22 1 -6.1788 -3.7286 -6.7026 23 1 -3.9899 -4.7425 -6.4517 24 6 -2.6743 0.2677 -6.6306 25 6 -2.2419 0.0316 -7.9299 26 6 -2.6424 0.8695 -8.9519 27 6 -3.4636 1.9490 -8.6817 28 6 -3.8917 2.1899 -7.3888 29 6 -3.4997 1.3530 -6.3628 30 1 -0.3634 0.5936 0.8389 31 1 -0.3633 0.4298 -0.9335 32 1 -0.3633 -1.0233 0.0945 33 1 3.4612 -2.1861 1.4436 34 1 4.0707 -0.6553 0.7395 35 1 3.8390 -2.0182 -1.2334 36 1 2.3612 -2.8209 -0.6075 37 1 -0.4024 -2.1044 -4.2286 38 1 -1.5572 -1.4306 -3.0535 39 1 -5.5668 -1.2399 -7.1615 40 1 -1.5965 -0.8082 -8.1408 41 1 -2.3106 0.6839 -9.9628 42 1 -3.7718 2.6052 -9.4822 43 1 -4.5334 3.0335 -7.1814 44 1 -3.8347 1.5414 -5.3535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771078079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:50 Heat of formation + Delta-G solvation = -119.930688 kcal Electronic energy + Delta-G solvation = -28995.473293 eV Core-core repulsion = 24878.837701 eV Total energy + Delta-G solvation = -4116.635592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95940 -39.54409 -38.91278 -37.29999 -36.04410 -34.81401 -32.82405 -31.77787 -31.67187 -29.87523 -29.69532 -27.72000 -26.40936 -25.04865 -23.19493 -22.39439 -21.60829 -21.50528 -19.86035 -19.43451 -18.03284 -17.65628 -17.01599 -16.40654 -16.06284 -15.98177 -15.70716 -15.48922 -14.94414 -14.75620 -14.57546 -14.30976 -13.72925 -13.55078 -13.08621 -12.96792 -12.56690 -12.49624 -12.43329 -12.33990 -12.25175 -12.09061 -11.69243 -11.43145 -11.41598 -11.24377 -11.17641 -11.08882 -10.98446 -10.58777 -10.46116 -10.39800 -10.36921 -10.28223 -9.84554 -9.54512 -8.74354 -8.22819 -7.85134 -7.69688 -6.25580 -4.16491 2.26842 2.44872 2.51967 2.68581 3.03044 3.13269 3.13911 3.53337 3.60407 3.93154 4.15214 4.35092 4.50157 4.77075 4.82737 4.85179 4.97041 4.98518 5.10301 5.19014 5.31511 5.41562 5.49187 5.59673 5.69472 5.72582 5.80455 5.83077 5.84753 5.86669 5.90348 6.02050 6.14240 6.40146 6.56193 6.63895 6.65347 6.79881 7.05443 7.16230 7.32734 7.46361 7.52432 7.74219 7.87758 7.93973 8.32080 8.84797 9.17146 9.58935 10.50394 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003273 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.861076 B = 8552.316024 C = 9672.300921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.086 0.914 4 O -0.369 6.369 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.117 4.117 8 H 0.118 0.882 9 C 0.474 3.526 10 O -0.506 6.506 11 O -0.331 6.331 12 C 0.071 3.929 13 C 0.464 3.536 14 O -0.575 6.575 15 N -0.409 5.409 16 C -0.359 4.359 17 H 0.104 0.896 18 C 0.045 3.955 19 N -0.847 5.847 20 Si 0.926 3.074 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.253 3.747 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.146 4.146 28 C -0.119 4.119 29 C -0.076 4.076 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.275 0.725 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 0.595 6.962 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.035 3.965 3 H 0.104 0.896 4 O -0.289 6.289 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.137 4.137 8 H 0.136 0.864 9 C 0.316 3.684 10 O -0.395 6.395 11 O -0.246 6.246 12 C -0.006 4.006 13 C 0.252 3.748 14 O -0.459 6.459 15 N -0.127 5.127 16 C -0.484 4.484 17 H 0.122 0.878 18 C -0.163 4.163 19 N -0.482 5.482 20 Si 0.752 3.248 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.196 1.196 24 C 0.162 3.838 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.165 4.165 28 C -0.138 4.138 29 C -0.095 4.095 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.232 0.792 6.970 11.595 hybrid contribution -0.755 -1.227 -0.333 1.478 sum 8.477 -0.434 6.637 10.775 Atomic orbital electron populations 1.22211 0.93134 1.03868 1.03767 1.22611 0.95862 0.95431 0.82628 0.89625 1.88926 1.39508 1.67879 1.32539 1.23544 0.87709 0.96578 0.94913 1.23261 0.99983 0.98945 0.96307 1.22533 0.94560 0.99637 0.96975 0.86383 1.23073 0.83112 0.83856 0.78348 1.90652 1.61974 1.20411 1.66440 1.86518 1.46769 1.46515 1.44813 1.22659 0.87740 0.95959 0.94229 1.19422 0.83584 0.87888 0.83900 1.90624 1.60560 1.22663 1.72030 1.41218 1.28268 1.18185 1.25052 1.19679 1.05628 0.93069 1.30072 0.87833 1.25289 0.96498 0.99222 0.95275 1.69886 1.15704 1.31864 1.30734 0.85998 0.78629 0.81486 0.78698 1.19651 1.20608 1.19635 1.16926 0.91550 0.88519 0.86768 1.20872 1.01115 0.99216 0.92483 1.20616 0.99569 0.95981 0.97554 1.20699 1.00937 0.98743 0.96105 1.20644 1.00751 0.99335 0.93034 1.20777 0.96012 0.94530 0.98208 0.90985 0.89966 0.91176 0.88488 0.91754 0.89290 0.88237 0.89028 0.88645 0.91342 0.87747 0.87707 0.87861 0.87689 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 8.42 37.16 0.31 -1.95 16 2 C 0.09 1.09 4.05 -26.12 -0.11 0.99 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 O -0.37 -4.51 11.19 -35.23 -0.39 -4.90 16 5 C 0.05 0.44 7.72 38.21 0.29 0.73 16 6 C -0.15 -1.46 6.64 -24.73 -0.16 -1.63 16 7 C -0.12 -1.40 3.55 -90.21 -0.32 -1.72 16 8 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 9 C 0.47 7.55 4.91 36.01 0.18 7.73 16 10 O -0.51 -9.05 14.97 -18.75 -0.28 -9.33 16 11 O -0.33 -6.14 9.07 -45.90 -0.42 -6.55 16 12 C 0.07 1.41 4.34 36.01 0.16 1.56 16 13 C 0.46 11.01 7.67 -10.99 -0.08 10.93 16 14 O -0.58 -15.04 16.48 -14.11 -0.23 -15.27 16 15 N -0.41 -10.07 2.66 -58.97 -0.16 -10.23 16 16 C -0.36 -8.69 9.30 -14.94 -0.14 -8.83 16 17 H 0.10 2.34 6.40 -52.49 -0.34 2.00 16 18 C 0.05 1.08 5.39 -17.49 -0.09 0.99 16 19 N -0.85 -21.20 9.73 55.49 0.54 -20.66 16 20 Si 0.93 18.96 29.56 -169.99 -5.02 13.94 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C 0.25 6.19 2.20 -83.69 -0.18 6.01 16 25 C -0.12 -2.69 9.57 -39.37 -0.38 -3.06 16 26 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 27 C -0.15 -2.82 10.04 -39.53 -0.40 -3.22 16 28 C -0.12 -2.43 10.04 -39.61 -0.40 -2.82 16 29 C -0.08 -1.78 8.81 -39.37 -0.35 -2.12 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.17 6.88 -51.93 -0.36 0.82 16 32 H 0.07 1.02 7.35 -51.93 -0.38 0.64 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.17 6.85 -51.93 -0.36 0.82 16 37 H 0.09 1.74 7.93 -51.93 -0.41 1.33 16 38 H 0.10 1.84 7.88 -51.93 -0.41 1.43 16 39 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 40 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.10 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -30.29 368.39 -8.52 -38.81 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.04 Total: 7.86 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.07 Total: 0.79 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.38 Total: -30.89 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.32 Total: -36.06 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.29 -8.52 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771078079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.119 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds