Wall clock time and date at job start Tue Mar 31 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.87047 * 2 1 4 4 O 1.43752 * 109.87694 * 121.00658 * 2 1 3 5 5 C 1.44382 * 106.97233 * 146.08737 * 4 2 1 6 6 C 1.54992 * 103.49129 * 319.93840 * 5 4 2 7 7 C 1.54160 * 109.97835 * 238.90049 * 2 1 3 8 8 H 1.08997 * 110.48392 * 119.78653 * 7 2 1 9 9 C 1.50706 * 110.51958 * 357.12219 * 7 2 1 10 10 O 1.20824 * 119.99787 * 270.02993 * 9 7 2 11 11 O 1.34228 * 120.00245 * 90.02665 * 9 7 2 12 12 C 1.45193 * 117.00249 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47439 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99591 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00068 * 180.02562 * 13 12 11 16 16 C 1.37137 * 120.00101 * 4.88907 * 15 13 12 17 17 H 1.08001 * 119.99958 * 348.16573 * 16 15 13 18 18 C 1.38895 * 119.99618 * 168.16564 * 16 15 13 19 19 N 1.31418 * 120.00163 * 353.74469 * 18 16 15 20 20 Si 1.86800 * 119.99419 * 173.74075 * 18 16 15 21 21 H 1.48497 * 109.47284 * 60.00189 * 20 18 16 22 22 H 1.48509 * 109.46833 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47368 * 299.99491 * 20 18 16 24 24 C 1.39795 * 119.99509 * 184.89232 * 15 13 12 25 25 C 1.38957 * 120.07811 * 98.81348 * 24 15 13 26 26 C 1.38089 * 119.91712 * 179.74836 * 25 24 15 27 27 C 1.38299 * 120.07937 * 0.54128 * 26 25 24 28 28 C 1.38306 * 120.15805 * 359.70414 * 27 26 25 29 29 C 1.38081 * 120.07666 * 0.02747 * 28 27 26 30 30 H 1.09002 * 109.47194 * 305.28147 * 1 2 3 31 31 H 1.09000 * 109.47037 * 65.27588 * 1 2 3 32 32 H 1.08998 * 109.47177 * 185.27845 * 1 2 3 33 33 H 1.09001 * 110.61541 * 201.43583 * 5 4 2 34 34 H 1.09000 * 110.75151 * 78.50207 * 5 4 2 35 35 H 1.09000 * 110.90499 * 155.22725 * 6 5 4 36 36 H 1.09001 * 110.90894 * 278.79413 * 6 5 4 37 37 H 1.09004 * 109.47101 * 299.99779 * 12 11 9 38 38 H 1.08999 * 109.47041 * 60.00190 * 12 11 9 39 39 H 0.97002 * 119.99563 * 185.01521 * 19 18 16 40 40 H 1.07996 * 120.03943 * 359.97438 * 25 24 15 41 41 H 1.08005 * 119.95512 * 180.29535 * 26 25 24 42 42 H 1.08001 * 119.92193 * 179.73152 * 27 26 25 43 43 H 1.08005 * 119.96542 * 180.02562 * 28 27 26 44 44 H 1.08005 * 120.03824 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6964 1.1587 5 6 3.2398 -1.3602 0.7676 6 6 2.9244 -1.8889 -0.6549 7 6 2.0567 -0.7484 -1.2406 8 1 2.6638 -0.0852 -1.8569 9 6 0.9124 -1.3143 -2.0415 10 8 0.5027 -2.4265 -1.8070 11 8 0.3482 -0.5827 -3.0153 12 6 -0.7495 -1.1912 -3.7452 13 6 -1.2518 -0.2295 -4.7911 14 8 -0.7356 0.8616 -4.9093 15 7 -2.2752 -0.5815 -5.5943 16 6 -2.9249 -1.7726 -5.3950 17 1 -2.5054 -2.5116 -4.7284 18 6 -4.1224 -2.0285 -6.0504 19 7 -4.6957 -1.0854 -6.7638 20 14 -4.9180 -3.7134 -5.9179 21 1 -5.2183 -4.0085 -4.4939 22 1 -6.1788 -3.7286 -6.7026 23 1 -3.9899 -4.7425 -6.4517 24 6 -2.6743 0.2677 -6.6306 25 6 -2.2419 0.0316 -7.9299 26 6 -2.6424 0.8695 -8.9519 27 6 -3.4636 1.9490 -8.6817 28 6 -3.8917 2.1899 -7.3888 29 6 -3.4997 1.3530 -6.3628 30 1 -0.3634 0.5936 0.8389 31 1 -0.3633 0.4298 -0.9335 32 1 -0.3633 -1.0233 0.0945 33 1 3.4612 -2.1861 1.4436 34 1 4.0707 -0.6553 0.7395 35 1 3.8390 -2.0182 -1.2334 36 1 2.3612 -2.8209 -0.6075 37 1 -0.4024 -2.1044 -4.2286 38 1 -1.5572 -1.4306 -3.0535 39 1 -5.5668 -1.2399 -7.1615 40 1 -1.5965 -0.8082 -8.1408 41 1 -2.3106 0.6839 -9.9628 42 1 -3.7718 2.6052 -9.4822 43 1 -4.5334 3.0335 -7.1814 44 1 -3.8347 1.5414 -5.3535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771078079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:49 Heat of formation + Delta-G solvation = -135.539595 kcal Electronic energy + Delta-G solvation = -28996.150146 eV Core-core repulsion = 24878.837701 eV Total energy + Delta-G solvation = -4117.312445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19174 -41.21459 -40.06695 -38.96539 -37.49844 -36.64398 -33.80843 -33.64438 -32.54311 -31.53952 -31.35464 -29.27310 -27.45301 -26.89295 -24.40606 -23.25609 -23.20538 -23.11526 -21.27568 -21.03304 -19.72463 -18.93157 -18.22244 -17.91508 -17.41452 -17.25348 -17.16383 -16.68572 -16.51297 -16.29102 -16.06294 -15.81180 -15.22908 -15.08504 -14.57411 -14.21799 -14.07434 -13.90245 -13.73513 -13.50868 -13.45757 -13.40893 -13.19765 -13.11366 -12.92928 -12.70918 -12.32799 -12.24589 -12.08692 -12.06475 -12.03967 -11.96437 -11.85905 -11.64476 -11.31863 -10.70788 -10.61217 -10.07246 -9.54047 -9.41268 -8.07043 -6.06240 0.80047 0.83847 1.00083 1.30135 1.35911 1.45371 1.53198 1.73806 2.23395 2.72710 2.81548 3.06297 3.23537 3.26900 3.48848 3.69274 3.91895 3.99686 4.08544 4.12070 4.18340 4.21423 4.24139 4.25661 4.30960 4.41230 4.49950 4.53597 4.76257 4.81297 4.84162 4.89066 4.92066 5.05178 5.06752 5.10174 5.26027 5.34275 5.39158 5.63044 5.77963 5.82431 5.83446 6.01986 6.21593 6.50100 6.59895 6.97489 7.33196 7.74450 8.65637 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.003273 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.861076 B = 8552.316024 C = 9672.300921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 H 0.111 0.889 4 O -0.390 6.390 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.117 4.117 8 H 0.142 0.858 9 C 0.472 3.528 10 O -0.530 6.530 11 O -0.343 6.343 12 C 0.083 3.917 13 C 0.452 3.548 14 O -0.608 6.608 15 N -0.416 5.416 16 C -0.378 4.378 17 H 0.113 0.887 18 C 0.007 3.993 19 N -0.864 5.864 20 Si 0.989 3.011 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.224 3.776 25 C -0.143 4.143 26 C -0.115 4.115 27 C -0.141 4.141 28 C -0.118 4.118 29 C -0.104 4.104 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.272 0.728 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.250 0.762 6.558 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.129 0.871 4 O -0.310 6.310 5 C -0.027 4.027 6 C -0.182 4.182 7 C -0.136 4.136 8 H 0.160 0.840 9 C 0.317 3.683 10 O -0.419 6.419 11 O -0.258 6.258 12 C 0.006 3.994 13 C 0.242 3.758 14 O -0.495 6.495 15 N -0.133 5.133 16 C -0.503 4.503 17 H 0.131 0.869 18 C -0.199 4.199 19 N -0.499 5.499 20 Si 0.813 3.187 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.192 1.192 24 C 0.134 3.866 25 C -0.162 4.162 26 C -0.134 4.134 27 C -0.159 4.159 28 C -0.136 4.136 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.152 0.848 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.076 0.953 6.573 12.068 hybrid contribution -1.020 -1.236 -0.225 1.618 sum 9.056 -0.283 6.347 11.063 Atomic orbital electron populations 1.22171 0.94859 1.02492 1.03397 1.22674 0.94603 0.96641 0.82482 0.87136 1.88902 1.41107 1.68309 1.32681 1.23796 0.87212 0.97529 0.94206 1.23304 1.00316 0.97058 0.97484 1.22788 0.93236 1.00890 0.96721 0.83989 1.23969 0.83398 0.83486 0.77497 1.90635 1.62862 1.21522 1.66861 1.86541 1.46399 1.47216 1.45634 1.22368 0.88488 0.95010 0.93532 1.19991 0.83371 0.88122 0.84361 1.90569 1.61612 1.24117 1.73168 1.41461 1.28238 1.18360 1.25211 1.20049 1.06218 0.93378 1.30686 0.86931 1.26075 0.96732 1.02276 0.94772 1.70057 1.15597 1.33276 1.30966 0.85037 0.77537 0.77488 0.78663 1.19236 1.20564 1.19178 1.17259 0.92676 0.89232 0.87406 1.21020 1.02146 1.00204 0.92873 1.21046 0.98688 0.95261 0.98374 1.21174 0.99480 0.98607 0.96611 1.21034 1.00317 0.99323 0.92952 1.20823 0.97431 0.95801 0.98324 0.89685 0.91650 0.93357 0.87053 0.88943 0.86485 0.90535 0.88332 0.88575 0.91654 0.88498 0.84307 0.83549 0.84758 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 8.42 71.98 0.61 -3.98 16 2 C 0.09 2.09 4.05 30.99 0.13 2.21 16 3 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 4 O -0.39 -8.87 11.19 -148.98 -1.67 -10.54 16 5 C 0.05 0.73 7.72 72.66 0.56 1.29 16 6 C -0.14 -2.59 6.64 31.89 0.21 -2.37 16 7 C -0.12 -2.64 3.55 -10.53 -0.04 -2.68 16 8 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 9 C 0.47 15.23 4.91 71.24 0.35 15.58 16 10 O -0.53 -19.37 14.97 21.97 0.33 -19.04 16 11 O -0.34 -13.06 9.07 -45.05 -0.41 -13.46 16 12 C 0.08 3.43 4.34 71.24 0.31 3.74 16 13 C 0.45 22.45 7.67 87.66 0.67 23.12 16 14 O -0.61 -33.24 16.48 15.76 0.26 -32.98 16 15 N -0.42 -21.28 2.66 -458.89 -1.22 -22.50 16 16 C -0.38 -18.81 9.30 84.02 0.78 -18.03 16 17 H 0.11 5.21 6.40 -2.91 -0.02 5.19 16 18 C 0.01 0.34 5.39 84.91 0.46 0.80 16 19 N -0.86 -43.79 9.73 21.65 0.21 -43.57 16 20 Si 0.99 38.96 29.56 68.60 2.03 40.99 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 24 C 0.22 11.31 2.20 38.22 0.08 11.40 16 25 C -0.14 -6.63 9.57 22.41 0.21 -6.41 16 26 C -0.12 -4.44 10.04 22.25 0.22 -4.22 16 27 C -0.14 -5.05 10.04 22.30 0.22 -4.82 16 28 C -0.12 -4.68 10.04 22.25 0.22 -4.46 16 29 C -0.10 -5.01 8.81 22.41 0.20 -4.82 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.94 6.88 -2.39 -0.02 1.93 16 32 H 0.05 1.47 7.35 -2.39 -0.02 1.45 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.76 6.85 -2.39 -0.02 1.74 16 37 H 0.10 3.89 7.93 -2.38 -0.02 3.87 16 38 H 0.10 3.91 7.88 -2.39 -0.02 3.89 16 39 H 0.27 13.30 8.32 -92.71 -0.77 12.52 16 40 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.08 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -68.02 368.39 5.75 -62.28 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 1.01 Total: 32.47 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.20 Total: 6.36 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.01 Total: -66.08 kcal Atomic # 8 Polarization: -74.53 SS G_CDS: -1.49 Total: -76.02 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -68.02 5.75 -62.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771078079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.262 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds