Wall clock time and date at job start Tue Mar 31 2020 17:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.98968 * 2 1 4 4 O 1.43746 * 109.87842 * 121.08259 * 2 1 3 5 5 C 1.44376 * 106.97118 * 145.93701 * 4 2 1 6 6 C 1.54997 * 103.49440 * 319.94179 * 5 4 2 7 7 C 1.54097 * 109.87808 * 238.91558 * 2 1 3 8 8 H 1.09005 * 110.60192 * 119.81051 * 7 2 1 9 9 C 1.50696 * 110.48960 * 357.22482 * 7 2 1 10 10 O 1.20832 * 119.99866 * 275.85512 * 9 7 2 11 11 O 1.34227 * 120.00510 * 95.85468 * 9 7 2 12 12 C 1.45201 * 117.00374 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47393 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99792 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00030 * 180.02562 * 13 12 11 16 16 C 1.39241 * 119.99873 * 175.50609 * 15 13 12 17 17 C 1.39476 * 119.83602 * 35.85361 * 16 15 13 18 18 C 1.36369 * 120.17376 * 179.97438 * 17 16 15 19 19 C 1.40878 * 119.82412 * 0.02562 * 18 17 16 20 20 C 1.41157 * 120.16145 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99530 * 205.61113 * 20 19 18 22 22 C 1.39905 * 120.00106 * 25.61235 * 20 19 18 23 23 N 1.30878 * 119.99956 * 16.89276 * 22 20 19 24 24 Si 1.86798 * 119.99992 * 196.89198 * 22 20 19 25 25 H 1.48493 * 109.47272 * 89.99703 * 24 22 20 26 26 H 1.48497 * 109.47365 * 210.00181 * 24 22 20 27 27 H 1.48506 * 109.46770 * 329.99802 * 24 22 20 28 28 C 1.40863 * 119.67170 * 359.95181 * 19 18 17 29 29 C 1.36380 * 119.83093 * 0.04872 * 28 19 18 30 30 H 1.09004 * 109.47080 * 185.28678 * 1 2 3 31 31 H 1.09002 * 109.47104 * 305.28138 * 1 2 3 32 32 H 1.09002 * 109.47376 * 65.28597 * 1 2 3 33 33 H 1.09003 * 110.61763 * 201.43408 * 5 4 2 34 34 H 1.09007 * 110.75479 * 78.50690 * 5 4 2 35 35 H 1.08999 * 110.90460 * 278.82066 * 6 5 4 36 36 H 1.08998 * 110.93656 * 155.23655 * 6 5 4 37 37 H 1.09001 * 109.47305 * 59.99707 * 12 11 9 38 38 H 1.09011 * 109.46743 * 299.99783 * 12 11 9 39 39 H 0.96997 * 119.99890 * 355.49966 * 15 13 12 40 40 H 1.08003 * 119.91581 * 0.02562 * 17 16 15 41 41 H 1.08001 * 120.09025 * 179.74612 * 18 17 16 42 42 H 0.97000 * 119.99614 * 180.02562 * 23 22 20 43 43 H 1.07997 * 120.08717 * 180.02562 * 28 19 18 44 44 H 1.07995 * 119.91532 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9195 -1.8914 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 1 2.6614 -0.0872 -1.8594 9 6 0.9074 -1.3104 -2.0412 10 8 0.4260 -2.3769 -1.7398 11 8 0.4208 -0.6264 -3.0886 12 6 -0.6845 -1.2282 -3.8130 13 6 -1.0934 -0.3241 -4.9471 14 8 -0.5111 0.7244 -5.1269 15 7 -2.1070 -0.6803 -5.7609 16 6 -2.5466 0.1958 -6.7499 17 6 -1.6283 1.0068 -7.4165 18 6 -2.0512 1.8670 -8.3866 19 6 -3.4196 1.9355 -8.7143 20 6 -3.8651 2.8237 -9.7169 21 1 -4.8807 3.1907 -9.7006 22 6 -2.9912 3.2285 -10.7316 23 7 -1.8914 2.5552 -10.9552 24 14 -3.3941 4.7299 -11.7674 25 1 -2.8179 5.9406 -11.1293 26 1 -2.8169 4.5638 -13.1255 27 1 -4.8681 4.8788 -11.8708 28 6 -4.3409 1.1129 -8.0370 29 6 -3.9029 0.2576 -7.0691 30 1 -0.3633 -1.0233 0.0947 31 1 -0.3633 0.5936 0.8389 32 1 -0.3634 0.4297 -0.9335 33 1 3.4585 -2.1907 1.4401 34 1 4.0704 -0.6609 0.7359 35 1 2.3541 -2.8220 -0.6099 36 1 3.8329 -2.0228 -1.2378 37 1 -1.5282 -1.3686 -3.1373 38 1 -0.3742 -2.1939 -4.2124 39 1 -2.5302 -1.5470 -5.6578 40 1 -0.5795 0.9529 -7.1645 41 1 -1.3395 2.4973 -8.8991 42 1 -1.2853 2.8361 -11.6585 43 1 -5.3914 1.1596 -8.2831 44 1 -4.6081 -0.3733 -6.5487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771084626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:28 Heat of formation + Delta-G solvation = -141.798843 kcal Electronic energy + Delta-G solvation = -27651.370791 eV Core-core repulsion = 23533.786925 eV Total energy + Delta-G solvation = -4117.583866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.36042 -39.85507 -39.15031 -37.36130 -36.47931 -34.52840 -33.12330 -33.02365 -31.92118 -29.97463 -29.46043 -28.36131 -26.78103 -24.87929 -23.37751 -22.63143 -21.57865 -21.10804 -20.28963 -19.69737 -18.12202 -17.54626 -17.34751 -17.25477 -16.50576 -16.40462 -16.04482 -15.99097 -15.29282 -15.15706 -14.79519 -14.05081 -13.92363 -13.66556 -13.23102 -12.97799 -12.84360 -12.71287 -12.70172 -12.57010 -12.55611 -12.09373 -11.88178 -11.68463 -11.45211 -11.43029 -11.36366 -11.15632 -11.14249 -10.93751 -10.79255 -10.71837 -10.08647 -9.98665 -9.74042 -9.47071 -9.11227 -8.94582 -7.57584 -7.07848 -6.78235 -4.35383 1.84782 2.11331 2.47343 2.91976 3.04769 3.07146 3.09039 3.25831 3.37493 3.60376 3.90382 3.92032 4.20128 4.42120 4.56969 4.57806 4.70927 4.76356 4.84584 4.93057 4.95886 4.97318 5.09268 5.19093 5.28218 5.43237 5.59464 5.61282 5.65813 5.83892 6.08775 6.11141 6.34818 6.43497 6.70352 6.91739 6.99352 7.09874 7.22596 7.42632 7.54562 7.61129 7.88191 8.01178 8.11628 8.24271 8.56942 8.63089 8.83737 8.94181 10.14142 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002001 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.651955 B =13989.562572 C =14369.175311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.088 0.912 4 O -0.368 6.368 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.118 4.118 8 H 0.120 0.880 9 C 0.478 3.522 10 O -0.504 6.504 11 O -0.327 6.327 12 C 0.050 3.950 13 C 0.498 3.502 14 O -0.508 6.508 15 N -0.644 5.644 16 C -0.013 4.013 17 C -0.084 4.084 18 C -0.156 4.156 19 C 0.107 3.893 20 C -0.457 4.457 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.789 5.789 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.216 4.216 29 C -0.100 4.100 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.282 0.718 43 H 0.097 0.903 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -7.926 17.070 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.106 0.894 4 O -0.287 6.287 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.137 4.137 8 H 0.138 0.862 9 C 0.320 3.680 10 O -0.392 6.392 11 O -0.242 6.242 12 C -0.027 4.027 13 C 0.282 3.718 14 O -0.383 6.383 15 N -0.288 5.288 16 C -0.104 4.104 17 C -0.104 4.104 18 C -0.176 4.176 19 C 0.104 3.896 20 C -0.486 4.486 21 H 0.097 0.903 22 C -0.144 4.144 23 N -0.414 5.414 24 Si 0.735 3.265 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.236 4.236 29 C -0.120 4.120 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.230 0.770 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.766 -7.495 17.066 20.597 hybrid contribution -0.348 -0.015 -0.803 0.875 sum 8.417 -7.510 16.263 19.792 Atomic orbital electron populations 1.22217 0.93287 1.03949 1.03530 1.22611 0.95775 0.95576 0.82596 0.89389 1.88936 1.39705 1.67683 1.32351 1.23560 0.87763 0.96691 0.94734 1.23272 1.00042 0.98554 0.96555 1.22567 0.94353 0.99882 0.96947 0.86169 1.23212 0.83429 0.82924 0.78403 1.90665 1.58757 1.22283 1.67485 1.86587 1.47233 1.49488 1.40862 1.22765 0.89339 0.96763 0.93849 1.19899 0.81961 0.87052 0.82842 1.90744 1.52380 1.24019 1.71120 1.42737 1.34885 1.18948 1.32276 1.17118 0.92707 1.02937 0.97671 1.20530 0.97756 0.96993 0.95131 1.20989 0.96742 1.01489 0.98391 1.17698 0.91650 0.89672 0.90553 1.19576 0.98631 1.23303 1.07088 0.90288 1.25948 0.94194 0.96867 0.97439 1.69844 1.10011 1.34600 1.26989 0.86279 0.79957 0.81663 0.78640 1.19207 1.20298 1.18595 1.20548 0.98487 1.01434 1.03093 1.20041 0.92267 1.00240 0.99489 0.90966 0.90768 0.90495 0.88309 0.91545 0.88395 0.89069 0.88247 0.88364 0.77019 0.87613 0.86220 0.90750 0.88518 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.41 37.16 0.31 -1.41 16 2 C 0.09 0.85 4.05 -26.16 -0.11 0.74 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 O -0.37 -3.66 11.19 -35.23 -0.39 -4.05 16 5 C 0.05 0.33 7.72 38.21 0.29 0.63 16 6 C -0.15 -1.08 6.65 -24.73 -0.16 -1.24 16 7 C -0.12 -1.06 3.54 -90.25 -0.32 -1.38 16 8 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.48 5.65 4.84 36.00 0.17 5.83 16 10 O -0.50 -6.73 14.74 -18.75 -0.28 -7.00 16 11 O -0.33 -4.45 9.40 -45.89 -0.43 -4.88 16 12 C 0.05 0.64 5.95 36.00 0.21 0.85 16 13 C 0.50 8.50 7.74 -10.99 -0.09 8.41 16 14 O -0.51 -10.98 13.95 -14.10 -0.20 -11.18 16 15 N -0.64 -10.86 5.30 -9.74 -0.05 -10.91 16 16 C -0.01 -0.27 6.30 -83.57 -0.53 -0.80 16 17 C -0.08 -2.07 8.61 -39.79 -0.34 -2.41 16 18 C -0.16 -4.14 8.62 -39.26 -0.34 -4.48 16 19 C 0.11 2.83 5.57 -106.80 -0.59 2.23 16 20 C -0.46 -11.95 9.04 -37.85 -0.34 -12.29 16 21 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 22 C 0.07 1.84 5.15 -17.33 -0.09 1.75 16 23 N -0.79 -20.30 10.97 55.55 0.61 -19.69 16 24 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 28 C -0.22 -5.13 9.74 -39.26 -0.38 -5.51 16 29 C -0.10 -2.14 9.90 -39.79 -0.39 -2.54 16 30 H 0.07 0.81 7.10 -51.93 -0.37 0.44 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.81 7.11 -51.93 -0.37 0.44 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.10 0.87 6.94 -51.93 -0.36 0.51 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 39 H 0.40 5.02 8.82 -40.82 -0.36 4.66 16 40 H 0.11 2.61 6.26 -52.48 -0.33 2.29 16 41 H 0.12 3.29 6.21 -52.49 -0.33 2.96 16 42 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -32.13 368.17 -8.80 -40.93 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.89 Total: 9.38 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.69 Total: -11.62 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.56 Total: -30.60 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.30 Total: -27.11 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.13 -8.80 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.870 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds