Wall clock time and date at job start Tue Mar 31 2020 17:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.98968 * 2 1 4 4 O 1.43746 * 109.87842 * 121.08259 * 2 1 3 5 5 C 1.44376 * 106.97118 * 145.93701 * 4 2 1 6 6 C 1.54997 * 103.49440 * 319.94179 * 5 4 2 7 7 C 1.54097 * 109.87808 * 238.91558 * 2 1 3 8 8 H 1.09005 * 110.60192 * 119.81051 * 7 2 1 9 9 C 1.50696 * 110.48960 * 357.22482 * 7 2 1 10 10 O 1.20832 * 119.99866 * 275.85512 * 9 7 2 11 11 O 1.34227 * 120.00510 * 95.85468 * 9 7 2 12 12 C 1.45201 * 117.00374 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47393 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99792 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00030 * 180.02562 * 13 12 11 16 16 C 1.39241 * 119.99873 * 175.50609 * 15 13 12 17 17 C 1.39476 * 119.83602 * 35.85361 * 16 15 13 18 18 C 1.36369 * 120.17376 * 179.97438 * 17 16 15 19 19 C 1.40878 * 119.82412 * 0.02562 * 18 17 16 20 20 C 1.41157 * 120.16145 * 179.97438 * 19 18 17 21 21 H 1.07995 * 119.99530 * 205.61113 * 20 19 18 22 22 C 1.39905 * 120.00106 * 25.61235 * 20 19 18 23 23 N 1.30878 * 119.99956 * 16.89276 * 22 20 19 24 24 Si 1.86798 * 119.99992 * 196.89198 * 22 20 19 25 25 H 1.48493 * 109.47272 * 89.99703 * 24 22 20 26 26 H 1.48497 * 109.47365 * 210.00181 * 24 22 20 27 27 H 1.48506 * 109.46770 * 329.99802 * 24 22 20 28 28 C 1.40863 * 119.67170 * 359.95181 * 19 18 17 29 29 C 1.36380 * 119.83093 * 0.04872 * 28 19 18 30 30 H 1.09004 * 109.47080 * 185.28678 * 1 2 3 31 31 H 1.09002 * 109.47104 * 305.28138 * 1 2 3 32 32 H 1.09002 * 109.47376 * 65.28597 * 1 2 3 33 33 H 1.09003 * 110.61763 * 201.43408 * 5 4 2 34 34 H 1.09007 * 110.75479 * 78.50690 * 5 4 2 35 35 H 1.08999 * 110.90460 * 278.82066 * 6 5 4 36 36 H 1.08998 * 110.93656 * 155.23655 * 6 5 4 37 37 H 1.09001 * 109.47305 * 59.99707 * 12 11 9 38 38 H 1.09011 * 109.46743 * 299.99783 * 12 11 9 39 39 H 0.96997 * 119.99890 * 355.49966 * 15 13 12 40 40 H 1.08003 * 119.91581 * 0.02562 * 17 16 15 41 41 H 1.08001 * 120.09025 * 179.74612 * 18 17 16 42 42 H 0.97000 * 119.99614 * 180.02562 * 23 22 20 43 43 H 1.07997 * 120.08717 * 180.02562 * 28 19 18 44 44 H 1.07995 * 119.91532 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9195 -1.8914 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 1 2.6614 -0.0872 -1.8594 9 6 0.9074 -1.3104 -2.0412 10 8 0.4260 -2.3769 -1.7398 11 8 0.4208 -0.6264 -3.0886 12 6 -0.6845 -1.2282 -3.8130 13 6 -1.0934 -0.3241 -4.9471 14 8 -0.5111 0.7244 -5.1269 15 7 -2.1070 -0.6803 -5.7609 16 6 -2.5466 0.1958 -6.7499 17 6 -1.6283 1.0068 -7.4165 18 6 -2.0512 1.8670 -8.3866 19 6 -3.4196 1.9355 -8.7143 20 6 -3.8651 2.8237 -9.7169 21 1 -4.8807 3.1907 -9.7006 22 6 -2.9912 3.2285 -10.7316 23 7 -1.8914 2.5552 -10.9552 24 14 -3.3941 4.7299 -11.7674 25 1 -2.8179 5.9406 -11.1293 26 1 -2.8169 4.5638 -13.1255 27 1 -4.8681 4.8788 -11.8708 28 6 -4.3409 1.1129 -8.0370 29 6 -3.9029 0.2576 -7.0691 30 1 -0.3633 -1.0233 0.0947 31 1 -0.3633 0.5936 0.8389 32 1 -0.3634 0.4297 -0.9335 33 1 3.4585 -2.1907 1.4401 34 1 4.0704 -0.6609 0.7359 35 1 2.3541 -2.8220 -0.6099 36 1 3.8329 -2.0228 -1.2378 37 1 -1.5282 -1.3686 -3.1373 38 1 -0.3742 -2.1939 -4.2124 39 1 -2.5302 -1.5470 -5.6578 40 1 -0.5795 0.9529 -7.1645 41 1 -1.3395 2.4973 -8.8991 42 1 -1.2853 2.8361 -11.6585 43 1 -5.3914 1.1596 -8.2831 44 1 -4.6081 -0.3733 -6.5487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771084626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:27 Heat of formation + Delta-G solvation = -161.103891 kcal Electronic energy + Delta-G solvation = -27652.207921 eV Core-core repulsion = 23533.786925 eV Total energy + Delta-G solvation = -4118.420996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25566 -41.21414 -40.07307 -39.04198 -37.55327 -36.22218 -34.79953 -33.81636 -32.55933 -31.61973 -31.24824 -29.76958 -27.56969 -26.56582 -24.29681 -23.30110 -23.22304 -22.82613 -21.33977 -21.06415 -19.27942 -19.03132 -18.81249 -18.16355 -17.64701 -17.42197 -17.23611 -16.99301 -16.69596 -16.13461 -15.94595 -15.74305 -15.18782 -15.04385 -14.49818 -14.38611 -13.98297 -13.83976 -13.81484 -13.67956 -13.51250 -13.42741 -13.25596 -13.20928 -12.90808 -12.80282 -12.41697 -12.36274 -12.11341 -11.99742 -11.93028 -11.73220 -11.64180 -11.53423 -11.19366 -10.87109 -10.72638 -10.62997 -9.46772 -8.90876 -8.61976 -6.29495 0.75815 0.95183 1.13478 1.15242 1.37607 1.41791 1.51964 1.68297 2.20408 2.36658 2.73211 2.77768 3.25477 3.46066 3.55551 3.69622 3.74843 3.95206 4.00203 4.01496 4.12854 4.20133 4.22943 4.43009 4.47146 4.49150 4.52316 4.80307 4.82545 4.88737 4.95590 5.02201 5.04693 5.08805 5.15299 5.20530 5.28598 5.39741 5.66830 5.82511 5.84116 6.04711 6.09052 6.31933 6.49458 6.63567 6.67104 6.91393 6.98210 7.28339 8.32152 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002001 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.651955 B =13989.562572 C =14369.175311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.390 6.390 5 C 0.046 3.954 6 C -0.142 4.142 7 C -0.120 4.120 8 H 0.137 0.863 9 C 0.480 3.520 10 O -0.521 6.521 11 O -0.345 6.345 12 C 0.058 3.942 13 C 0.499 3.501 14 O -0.557 6.557 15 N -0.634 5.634 16 C 0.002 3.998 17 C -0.099 4.099 18 C -0.182 4.182 19 C 0.074 3.926 20 C -0.492 4.492 21 H 0.081 0.919 22 C 0.030 3.970 23 N -0.825 5.825 24 Si 0.984 3.016 25 H -0.265 1.265 26 H -0.268 1.268 27 H -0.254 1.254 28 C -0.224 4.224 29 C -0.094 4.094 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.421 0.579 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.288 0.712 43 H 0.111 0.889 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -8.893 18.396 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.122 0.878 4 O -0.310 6.310 5 C -0.030 4.030 6 C -0.180 4.180 7 C -0.139 4.139 8 H 0.155 0.845 9 C 0.324 3.676 10 O -0.410 6.410 11 O -0.261 6.261 12 C -0.018 4.018 13 C 0.286 3.714 14 O -0.435 6.435 15 N -0.281 5.281 16 C -0.091 4.091 17 C -0.119 4.119 18 C -0.202 4.202 19 C 0.071 3.929 20 C -0.522 4.522 21 H 0.099 0.901 22 C -0.184 4.184 23 N -0.451 5.451 24 Si 0.805 3.195 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.178 1.178 28 C -0.244 4.244 29 C -0.114 4.114 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.259 0.741 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.705 -8.522 18.421 22.085 hybrid contribution -0.292 0.150 -1.051 1.102 sum 8.413 -8.372 17.370 21.037 Atomic orbital electron populations 1.22181 0.94313 1.02945 1.03385 1.22687 0.95090 0.96410 0.82550 0.87776 1.88908 1.41135 1.68113 1.32820 1.23788 0.87245 0.97453 0.94475 1.23291 1.00389 0.97068 0.97249 1.22754 0.93659 1.00819 0.96708 0.84513 1.23722 0.83580 0.82556 0.77742 1.90655 1.59463 1.23075 1.67797 1.86588 1.47576 1.50335 1.41592 1.22727 0.90409 0.95989 0.92711 1.20650 0.80688 0.86816 0.83222 1.90735 1.53853 1.26446 1.72476 1.42601 1.35006 1.19381 1.31086 1.17178 0.92573 1.02045 0.97315 1.20572 0.97991 0.97860 0.95447 1.20880 0.96873 1.02716 0.99717 1.18040 0.92076 0.91010 0.91741 1.19833 0.99296 1.24883 1.08158 0.90080 1.26831 0.93790 0.99435 0.98382 1.69911 1.11094 1.36201 1.27917 0.85169 0.79996 0.77349 0.77000 1.19041 1.19282 1.17767 1.20832 0.98891 1.01314 1.03356 1.20416 0.92758 0.99685 0.98536 0.92502 0.90067 0.91289 0.87068 0.89437 0.90115 0.86737 0.85670 0.85679 0.74070 0.88566 0.88608 0.90186 0.87073 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 8.41 71.98 0.61 -2.67 16 2 C 0.09 1.52 4.05 30.97 0.13 1.65 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 O -0.39 -7.12 11.19 -148.98 -1.67 -8.79 16 5 C 0.05 0.51 7.72 72.67 0.56 1.08 16 6 C -0.14 -1.79 6.65 31.89 0.21 -1.58 16 7 C -0.12 -1.94 3.54 -10.55 -0.04 -1.98 16 8 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 9 C 0.48 10.63 4.84 71.23 0.34 10.98 16 10 O -0.52 -13.12 14.74 21.95 0.32 -12.79 16 11 O -0.35 -8.90 9.40 -45.03 -0.42 -9.32 16 12 C 0.06 1.34 5.95 71.23 0.42 1.76 16 13 C 0.50 16.34 7.74 87.66 0.68 17.02 16 14 O -0.56 -24.21 13.95 15.77 0.22 -23.99 16 15 N -0.63 -19.97 5.30 -303.12 -1.61 -21.58 16 16 C 0.00 0.09 6.30 38.56 0.24 0.33 16 17 C -0.10 -4.98 8.61 22.13 0.19 -4.79 16 18 C -0.18 -10.09 8.62 22.48 0.19 -9.90 16 19 C 0.07 4.03 5.57 -21.27 -0.12 3.91 16 20 C -0.49 -26.59 9.04 23.39 0.21 -26.38 16 21 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 22 C 0.03 1.55 5.15 85.24 0.44 1.99 16 23 N -0.83 -44.18 10.97 21.82 0.24 -43.94 16 24 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 28 C -0.22 -10.57 9.74 22.48 0.22 -10.35 16 29 C -0.09 -3.83 9.90 22.14 0.22 -3.62 16 30 H 0.06 1.25 7.10 -2.39 -0.02 1.23 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.41 7.11 -2.39 -0.02 1.39 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.08 1.32 6.94 -2.39 -0.02 1.30 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 2.27 8.13 -2.39 -0.02 2.26 16 38 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.42 9.15 8.82 -92.71 -0.82 8.34 16 40 H 0.10 4.97 6.26 -2.91 -0.02 4.95 16 41 H 0.10 5.65 6.21 -2.91 -0.02 5.63 16 42 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -73.29 368.17 3.85 -69.44 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.22 Total: 32.90 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.51 Total: -22.56 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.37 Total: -65.52 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -1.55 Total: -54.89 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -73.29 3.85 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.661 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds