Wall clock time and date at job start Tue Mar 31 2020 17:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.86817 * 2 1 4 4 O 1.43741 * 109.87891 * 238.83396 * 2 1 3 5 5 C 1.44382 * 106.97418 * 214.06355 * 4 2 1 6 6 C 1.54995 * 103.49126 * 40.06205 * 5 4 2 7 7 C 1.54099 * 109.87434 * 121.00327 * 2 1 3 8 8 H 1.09002 * 110.48982 * 240.25950 * 7 2 1 9 9 C 1.50697 * 110.49432 * 2.77750 * 7 2 1 10 10 O 1.20823 * 120.00192 * 86.99749 * 9 7 2 11 11 O 1.34228 * 120.00001 * 267.00645 * 9 7 2 12 12 C 1.45204 * 117.00001 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47013 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00324 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00183 * 179.97438 * 13 12 11 16 16 C 1.39241 * 120.00556 * 185.23452 * 15 13 12 17 17 C 1.39481 * 119.83451 * 212.43418 * 16 15 13 18 18 C 1.36381 * 120.16560 * 179.72065 * 17 16 15 19 19 C 1.40875 * 119.82603 * 0.52710 * 18 17 16 20 20 C 1.41150 * 120.15917 * 179.76742 * 19 18 17 21 21 H 1.08002 * 120.00023 * 205.88915 * 20 19 18 22 22 C 1.39904 * 120.00444 * 25.89117 * 20 19 18 23 23 N 1.30875 * 119.99959 * 16.70674 * 22 20 19 24 24 Si 1.86795 * 120.00292 * 196.70659 * 22 20 19 25 25 H 1.48504 * 109.46922 * 89.99959 * 24 22 20 26 26 H 1.48499 * 109.47453 * 209.99606 * 24 22 20 27 27 H 1.48493 * 109.47305 * 329.99992 * 24 22 20 28 28 C 1.40864 * 119.67427 * 359.74270 * 19 18 17 29 29 C 1.36373 * 119.82884 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.46832 * 297.60557 * 1 2 3 31 31 H 1.08997 * 109.46659 * 57.60200 * 1 2 3 32 32 H 1.08995 * 109.47110 * 177.60503 * 1 2 3 33 33 H 1.08995 * 110.61974 * 281.55963 * 5 4 2 34 34 H 1.08998 * 110.75006 * 158.62611 * 5 4 2 35 35 H 1.09001 * 110.90747 * 204.77849 * 6 5 4 36 36 H 1.09006 * 110.93776 * 81.18475 * 6 5 4 37 37 H 1.09002 * 109.46828 * 299.99096 * 12 11 9 38 38 H 1.08996 * 109.47388 * 59.99517 * 12 11 9 39 39 H 0.97000 * 119.99841 * 5.23413 * 15 13 12 40 40 H 1.07990 * 119.91800 * 359.97438 * 17 16 15 41 41 H 1.07995 * 120.08641 * 180.25519 * 18 17 16 42 42 H 0.96998 * 120.00632 * 180.02562 * 23 22 20 43 43 H 1.07999 * 120.08908 * 180.02562 * 28 19 18 44 44 H 1.08002 * 119.91815 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 3.2380 -1.3652 -0.7627 6 6 2.9196 -1.8905 0.6603 7 6 2.0539 -0.7465 1.2422 8 1 2.6600 -0.0827 1.8588 9 6 0.9074 -1.3076 2.0431 10 8 0.4598 -2.3975 1.7756 11 8 0.3831 -0.5964 3.0536 12 6 -0.7197 -1.1989 3.7811 13 6 -1.1737 -0.2624 4.8709 14 8 -0.6219 0.8074 5.0202 15 7 -2.1929 -0.6134 5.6798 16 6 -2.6843 0.2940 6.6147 17 6 -3.1887 -0.1670 7.8306 18 6 -3.6664 0.7162 8.7535 19 6 -3.6597 2.0964 8.4714 20 6 -4.1570 3.0163 9.4195 21 1 -4.5428 3.9713 9.0945 22 6 -4.1500 2.6912 10.7802 23 7 -3.4049 1.7066 11.2140 24 14 -5.2043 3.6624 11.9780 25 1 -6.5421 3.0271 12.0874 26 1 -4.5526 3.6766 13.3122 27 1 -5.3566 5.0553 11.4865 28 6 -3.1539 2.5539 7.2389 29 6 -2.6752 1.6590 6.3280 30 1 -0.3633 0.4762 0.9107 31 1 -0.3632 0.5506 -0.8677 32 1 -0.3633 -1.0267 -0.0429 33 1 4.0685 -0.6600 -0.7346 34 1 3.4612 -2.1926 -1.4362 35 1 3.8332 -2.0207 1.2404 36 1 2.3541 -2.8213 0.6145 37 1 -1.5464 -1.3880 3.0964 38 1 -0.3921 -2.1395 4.2239 39 1 -2.5843 -1.4983 5.6108 40 1 -3.1973 -1.2257 8.0435 41 1 -4.0529 0.3581 9.6962 42 1 -3.4003 1.4809 12.1573 43 1 -3.1451 3.6106 7.0159 44 1 -2.2874 2.0082 5.3824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771084632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:31 Heat of formation + Delta-G solvation = -142.204003 kcal Electronic energy + Delta-G solvation = -27611.524845 eV Core-core repulsion = 23493.923410 eV Total energy + Delta-G solvation = -4117.601435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36603 -39.86332 -39.15756 -37.37222 -36.49102 -34.52550 -33.13741 -33.03611 -31.91940 -29.94435 -29.53696 -28.33373 -26.78602 -24.88341 -23.38595 -22.63293 -21.77723 -20.88479 -20.28943 -19.77474 -18.11660 -17.56430 -17.32401 -17.27747 -16.51757 -16.38666 -16.08534 -15.97913 -15.24623 -15.17425 -14.84857 -14.06112 -13.93997 -13.65834 -13.22467 -12.94145 -12.89757 -12.74693 -12.64279 -12.59367 -12.54490 -12.15155 -11.90382 -11.68026 -11.44882 -11.42203 -11.36256 -11.17314 -11.09677 -10.91717 -10.81143 -10.78912 -10.08743 -10.06238 -9.65071 -9.48445 -9.19902 -8.98447 -7.60685 -7.04797 -6.79263 -4.35455 1.84533 2.10783 2.43606 2.91989 3.03392 3.05636 3.08393 3.27878 3.37197 3.58921 3.89497 3.91234 4.19915 4.41690 4.56877 4.57289 4.70305 4.76023 4.83577 4.92960 4.95272 4.96502 5.08750 5.19213 5.28044 5.43549 5.58959 5.61608 5.64001 5.83597 6.09060 6.14002 6.35770 6.43149 6.67405 6.83759 6.98657 7.10986 7.21558 7.42399 7.53243 7.63309 7.80469 7.97687 8.17473 8.22134 8.52144 8.62143 8.83039 8.92646 10.13143 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.001903 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.139309 B =14712.731354 C =14982.536903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.088 0.912 4 O -0.368 6.368 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.118 4.118 8 H 0.120 0.880 9 C 0.478 3.522 10 O -0.504 6.504 11 O -0.327 6.327 12 C 0.050 3.950 13 C 0.497 3.503 14 O -0.509 6.509 15 N -0.643 5.643 16 C -0.010 4.010 17 C -0.111 4.111 18 C -0.153 4.153 19 C 0.106 3.894 20 C -0.456 4.456 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.792 5.792 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.215 4.215 29 C -0.076 4.076 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.281 0.719 43 H 0.096 0.904 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -7.977 -16.889 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.106 0.894 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.184 4.184 7 C -0.138 4.138 8 H 0.138 0.862 9 C 0.321 3.679 10 O -0.392 6.392 11 O -0.242 6.242 12 C -0.027 4.027 13 C 0.281 3.719 14 O -0.384 6.384 15 N -0.288 5.288 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.172 4.172 19 C 0.104 3.896 20 C -0.485 4.485 21 H 0.097 0.903 22 C -0.144 4.144 23 N -0.417 5.417 24 Si 0.735 3.265 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.235 4.235 29 C -0.096 4.096 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.337 -7.637 -16.844 20.718 hybrid contribution -0.505 -0.270 0.965 1.122 sum 8.832 -7.907 -15.879 19.816 Atomic orbital electron populations 1.22219 0.93293 1.03811 1.03722 1.22610 0.95780 0.95593 0.82604 0.89380 1.88934 1.39737 1.67613 1.32403 1.23560 0.87747 0.96717 0.94732 1.23276 1.00040 0.98604 0.96530 1.22570 0.94321 0.99893 0.96968 0.86151 1.23206 0.83245 0.83333 0.78149 1.90663 1.60308 1.21311 1.66931 1.86586 1.46702 1.47834 1.43041 1.22759 0.89304 0.96543 0.94106 1.19891 0.80730 0.87982 0.83274 1.90751 1.54199 1.23351 1.70067 1.42785 1.33203 1.16981 1.35793 1.17110 1.12852 0.88963 0.91286 1.20202 1.02634 0.97899 0.92376 1.20888 1.04651 0.92784 0.98912 1.17686 0.88154 0.92434 0.91375 1.19584 1.35629 1.02582 0.90743 0.90255 1.25943 0.93893 0.94995 0.99600 1.69838 1.29632 1.25369 1.16863 0.86271 0.80430 0.80827 0.78974 1.19251 1.20306 1.18569 1.20660 1.08247 0.97429 0.97138 1.20266 0.99006 0.91547 0.98737 0.90314 0.90719 0.91151 0.91574 0.88288 0.89090 0.88316 0.88252 0.88336 0.76943 0.89054 0.86074 0.90786 0.88570 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.41 37.16 0.31 -1.40 16 2 C 0.09 0.84 4.05 -26.15 -0.11 0.73 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.37 -3.63 11.19 -35.23 -0.39 -4.03 16 5 C 0.05 0.33 7.72 38.21 0.29 0.62 16 6 C -0.15 -1.07 6.65 -24.72 -0.16 -1.24 16 7 C -0.12 -1.05 3.55 -90.24 -0.32 -1.37 16 8 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 9 C 0.48 5.63 4.87 36.00 0.18 5.80 16 10 O -0.50 -6.72 14.78 -18.75 -0.28 -6.99 16 11 O -0.33 -4.41 9.31 -45.90 -0.43 -4.84 16 12 C 0.05 0.64 5.95 36.00 0.21 0.85 16 13 C 0.50 8.44 7.64 -10.99 -0.08 8.36 16 14 O -0.51 -10.96 14.11 -14.11 -0.20 -11.16 16 15 N -0.64 -10.84 5.31 -9.74 -0.05 -10.89 16 16 C -0.01 -0.22 6.30 -83.57 -0.53 -0.75 16 17 C -0.11 -2.47 9.89 -39.79 -0.39 -2.87 16 18 C -0.15 -3.84 8.63 -39.25 -0.34 -4.18 16 19 C 0.11 2.80 5.56 -106.80 -0.59 2.21 16 20 C -0.46 -11.92 9.04 -37.85 -0.34 -12.26 16 21 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 22 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 23 N -0.79 -20.13 10.97 55.55 0.61 -19.52 16 24 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 28 C -0.21 -5.38 9.74 -39.26 -0.38 -5.76 16 29 C -0.08 -1.79 8.58 -39.79 -0.34 -2.13 16 30 H 0.08 0.82 7.19 -51.93 -0.37 0.44 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.78 7.03 -51.93 -0.37 0.42 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.87 6.89 -51.93 -0.36 0.52 16 37 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 38 H 0.10 1.05 8.13 -51.93 -0.42 0.62 16 39 H 0.40 5.04 8.81 -40.82 -0.36 4.68 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.12 3.12 6.21 -52.49 -0.33 2.79 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.10 2.39 6.34 -52.49 -0.33 2.05 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -32.14 368.21 -8.80 -40.93 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.89 Total: 9.30 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.69 Total: -11.65 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.56 Total: -30.41 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.30 Total: -27.02 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.14 -8.80 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.271 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds