Wall clock time and date at job start Tue Mar 31 2020 17:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.86817 * 2 1 4 4 O 1.43741 * 109.87891 * 238.83396 * 2 1 3 5 5 C 1.44382 * 106.97418 * 214.06355 * 4 2 1 6 6 C 1.54995 * 103.49126 * 40.06205 * 5 4 2 7 7 C 1.54099 * 109.87434 * 121.00327 * 2 1 3 8 8 H 1.09002 * 110.48982 * 240.25950 * 7 2 1 9 9 C 1.50697 * 110.49432 * 2.77750 * 7 2 1 10 10 O 1.20823 * 120.00192 * 86.99749 * 9 7 2 11 11 O 1.34228 * 120.00001 * 267.00645 * 9 7 2 12 12 C 1.45204 * 117.00001 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47013 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00324 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00183 * 179.97438 * 13 12 11 16 16 C 1.39241 * 120.00556 * 185.23452 * 15 13 12 17 17 C 1.39481 * 119.83451 * 212.43418 * 16 15 13 18 18 C 1.36381 * 120.16560 * 179.72065 * 17 16 15 19 19 C 1.40875 * 119.82603 * 0.52710 * 18 17 16 20 20 C 1.41150 * 120.15917 * 179.76742 * 19 18 17 21 21 H 1.08002 * 120.00023 * 205.88915 * 20 19 18 22 22 C 1.39904 * 120.00444 * 25.89117 * 20 19 18 23 23 N 1.30875 * 119.99959 * 16.70674 * 22 20 19 24 24 Si 1.86795 * 120.00292 * 196.70659 * 22 20 19 25 25 H 1.48504 * 109.46922 * 89.99959 * 24 22 20 26 26 H 1.48499 * 109.47453 * 209.99606 * 24 22 20 27 27 H 1.48493 * 109.47305 * 329.99992 * 24 22 20 28 28 C 1.40864 * 119.67427 * 359.74270 * 19 18 17 29 29 C 1.36373 * 119.82884 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.46832 * 297.60557 * 1 2 3 31 31 H 1.08997 * 109.46659 * 57.60200 * 1 2 3 32 32 H 1.08995 * 109.47110 * 177.60503 * 1 2 3 33 33 H 1.08995 * 110.61974 * 281.55963 * 5 4 2 34 34 H 1.08998 * 110.75006 * 158.62611 * 5 4 2 35 35 H 1.09001 * 110.90747 * 204.77849 * 6 5 4 36 36 H 1.09006 * 110.93776 * 81.18475 * 6 5 4 37 37 H 1.09002 * 109.46828 * 299.99096 * 12 11 9 38 38 H 1.08996 * 109.47388 * 59.99517 * 12 11 9 39 39 H 0.97000 * 119.99841 * 5.23413 * 15 13 12 40 40 H 1.07990 * 119.91800 * 359.97438 * 17 16 15 41 41 H 1.07995 * 120.08641 * 180.25519 * 18 17 16 42 42 H 0.96998 * 120.00632 * 180.02562 * 23 22 20 43 43 H 1.07999 * 120.08908 * 180.02562 * 28 19 18 44 44 H 1.08002 * 119.91815 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 3.2380 -1.3652 -0.7627 6 6 2.9196 -1.8905 0.6603 7 6 2.0539 -0.7465 1.2422 8 1 2.6600 -0.0827 1.8588 9 6 0.9074 -1.3076 2.0431 10 8 0.4598 -2.3975 1.7756 11 8 0.3831 -0.5964 3.0536 12 6 -0.7197 -1.1989 3.7811 13 6 -1.1737 -0.2624 4.8709 14 8 -0.6219 0.8074 5.0202 15 7 -2.1929 -0.6134 5.6798 16 6 -2.6843 0.2940 6.6147 17 6 -3.1887 -0.1670 7.8306 18 6 -3.6664 0.7162 8.7535 19 6 -3.6597 2.0964 8.4714 20 6 -4.1570 3.0163 9.4195 21 1 -4.5428 3.9713 9.0945 22 6 -4.1500 2.6912 10.7802 23 7 -3.4049 1.7066 11.2140 24 14 -5.2043 3.6624 11.9780 25 1 -6.5421 3.0271 12.0874 26 1 -4.5526 3.6766 13.3122 27 1 -5.3566 5.0553 11.4865 28 6 -3.1539 2.5539 7.2389 29 6 -2.6752 1.6590 6.3280 30 1 -0.3633 0.4762 0.9107 31 1 -0.3632 0.5506 -0.8677 32 1 -0.3633 -1.0267 -0.0429 33 1 4.0685 -0.6600 -0.7346 34 1 3.4612 -2.1926 -1.4362 35 1 3.8332 -2.0207 1.2404 36 1 2.3541 -2.8213 0.6145 37 1 -1.5464 -1.3880 3.0964 38 1 -0.3921 -2.1395 4.2239 39 1 -2.5843 -1.4983 5.6108 40 1 -3.1973 -1.2257 8.0435 41 1 -4.0529 0.3581 9.6962 42 1 -3.4003 1.4809 12.1573 43 1 -3.1451 3.6106 7.0159 44 1 -2.2874 2.0082 5.3824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771084632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:30 Heat of formation + Delta-G solvation = -161.283782 kcal Electronic energy + Delta-G solvation = -27612.352207 eV Core-core repulsion = 23493.923410 eV Total energy + Delta-G solvation = -4118.428796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.25558 -41.22451 -40.07100 -39.05551 -37.55948 -36.21507 -34.82097 -33.81852 -32.55118 -31.60119 -31.29320 -29.75766 -27.56818 -26.56998 -24.31578 -23.46065 -23.21884 -22.63463 -21.38566 -21.07662 -19.31470 -19.02509 -18.73285 -18.16907 -17.75285 -17.33653 -17.25267 -16.99914 -16.69458 -16.19271 -15.91292 -15.71694 -15.23470 -15.00665 -14.52579 -14.35872 -14.01799 -13.85988 -13.80434 -13.70893 -13.50124 -13.42582 -13.24788 -13.20906 -12.86791 -12.78620 -12.49274 -12.34821 -12.10638 -11.98837 -11.93171 -11.78456 -11.65590 -11.45416 -11.21816 -10.90719 -10.72206 -10.68301 -9.49451 -8.88464 -8.61964 -6.29488 0.73081 0.95624 1.11933 1.15100 1.38741 1.41485 1.52876 1.69659 2.21536 2.35577 2.73153 2.78177 3.25173 3.46499 3.54957 3.69852 3.72212 3.95662 4.00013 4.01829 4.13432 4.20512 4.22972 4.37870 4.47538 4.49542 4.53422 4.80645 4.82940 4.89145 4.90402 5.02484 5.05440 5.08311 5.11873 5.20897 5.27928 5.39670 5.63916 5.82924 5.84737 5.99077 6.07126 6.34672 6.49521 6.62025 6.65355 6.91468 6.96045 7.26347 8.32124 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.001903 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.139309 B =14712.731354 C =14982.536903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.390 6.390 5 C 0.046 3.954 6 C -0.143 4.143 7 C -0.120 4.120 8 H 0.138 0.862 9 C 0.480 3.520 10 O -0.522 6.522 11 O -0.344 6.344 12 C 0.058 3.942 13 C 0.500 3.500 14 O -0.556 6.556 15 N -0.634 5.634 16 C 0.006 3.994 17 C -0.109 4.109 18 C -0.171 4.171 19 C 0.075 3.925 20 C -0.494 4.494 21 H 0.075 0.925 22 C 0.034 3.966 23 N -0.823 5.823 24 Si 0.985 3.015 25 H -0.259 1.259 26 H -0.268 1.268 27 H -0.261 1.261 28 C -0.233 4.233 29 C -0.087 4.087 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.421 0.579 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.290 0.710 43 H 0.095 0.905 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -9.226 -17.553 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.032 3.968 3 H 0.123 0.877 4 O -0.310 6.310 5 C -0.030 4.030 6 C -0.180 4.180 7 C -0.139 4.139 8 H 0.156 0.844 9 C 0.324 3.676 10 O -0.411 6.411 11 O -0.260 6.260 12 C -0.019 4.019 13 C 0.287 3.713 14 O -0.434 6.434 15 N -0.281 5.281 16 C -0.087 4.087 17 C -0.129 4.129 18 C -0.191 4.191 19 C 0.072 3.928 20 C -0.523 4.523 21 H 0.093 0.907 22 C -0.181 4.181 23 N -0.449 5.449 24 Si 0.806 3.194 25 H -0.184 1.184 26 H -0.193 1.193 27 H -0.185 1.185 28 C -0.253 4.253 29 C -0.107 4.107 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.259 0.741 40 H 0.145 0.855 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.175 -8.939 -17.541 22.162 hybrid contribution -0.672 0.019 1.009 1.212 sum 9.504 -8.920 -16.533 21.053 Atomic orbital electron populations 1.22184 0.94362 1.02723 1.03623 1.22687 0.95056 0.96447 0.82572 0.87735 1.88907 1.41173 1.68049 1.32892 1.23788 0.87229 0.97482 0.94476 1.23293 1.00401 0.97104 0.97229 1.22758 0.93606 1.00825 0.96715 0.84375 1.23726 0.83376 0.82968 0.77507 1.90654 1.61007 1.22129 1.67286 1.86586 1.47001 1.48675 1.43714 1.22719 0.90309 0.95606 0.93236 1.20621 0.79663 0.87757 0.83284 1.90738 1.55706 1.25688 1.71298 1.42658 1.33347 1.17328 1.34754 1.17158 1.10690 0.89100 0.91752 1.20479 1.01333 0.99331 0.91723 1.20908 1.05901 0.92880 0.99399 1.18012 0.89253 0.93425 0.92094 1.19797 1.37579 1.02907 0.92045 0.90698 1.26767 0.94549 0.96019 1.00738 1.69876 1.30553 1.26730 1.17774 0.85158 0.78628 0.79102 0.76552 1.18381 1.19276 1.18476 1.20790 1.09068 0.97874 0.97555 1.20387 0.99160 0.92591 0.98588 0.91055 0.90104 0.92718 0.89443 0.87076 0.86720 0.90099 0.85778 0.85643 0.74106 0.85525 0.87146 0.89972 0.88718 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 8.41 71.98 0.61 -2.67 16 2 C 0.09 1.50 4.05 30.97 0.13 1.62 16 3 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 4 O -0.39 -7.07 11.19 -148.98 -1.67 -8.74 16 5 C 0.05 0.51 7.72 72.66 0.56 1.07 16 6 C -0.14 -1.76 6.65 31.90 0.21 -1.55 16 7 C -0.12 -1.90 3.55 -10.55 -0.04 -1.93 16 8 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 9 C 0.48 10.51 4.87 71.23 0.35 10.86 16 10 O -0.52 -13.08 14.78 21.97 0.32 -12.76 16 11 O -0.34 -8.72 9.31 -45.04 -0.42 -9.14 16 12 C 0.06 1.32 5.95 71.23 0.42 1.74 16 13 C 0.50 16.16 7.64 87.66 0.67 16.83 16 14 O -0.56 -23.73 14.11 15.74 0.22 -23.50 16 15 N -0.63 -20.02 5.31 -303.11 -1.61 -21.63 16 16 C 0.01 0.26 6.30 38.57 0.24 0.51 16 17 C -0.11 -4.75 9.89 22.14 0.22 -4.53 16 18 C -0.17 -8.76 8.63 22.48 0.19 -8.56 16 19 C 0.07 4.09 5.56 -21.28 -0.12 3.97 16 20 C -0.49 -26.79 9.04 23.39 0.21 -26.57 16 21 H 0.07 3.94 7.90 -2.91 -0.02 3.92 16 22 C 0.03 1.72 5.15 85.24 0.44 2.15 16 23 N -0.82 -42.57 10.97 21.82 0.24 -42.33 16 24 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 25 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 26 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 28 C -0.23 -12.10 9.74 22.48 0.22 -11.88 16 29 C -0.09 -4.18 8.58 22.13 0.19 -3.99 16 30 H 0.07 1.44 7.19 -2.39 -0.02 1.42 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.20 7.03 -2.39 -0.02 1.18 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.32 6.89 -2.38 -0.02 1.30 16 37 H 0.12 2.26 8.13 -2.39 -0.02 2.24 16 38 H 0.13 2.23 8.13 -2.39 -0.02 2.21 16 39 H 0.42 9.32 8.81 -92.71 -0.82 8.50 16 40 H 0.13 4.55 8.06 -2.92 -0.02 4.53 16 41 H 0.11 5.83 6.21 -2.91 -0.02 5.81 16 42 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 43 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.10 4.90 6.34 -2.91 -0.02 4.88 16 Total: -1.00 -71.99 368.21 3.85 -68.14 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.22 Total: 32.99 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.50 Total: -22.93 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.37 Total: -63.97 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -1.54 Total: -54.14 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -71.99 3.85 -68.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.142 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds