Wall clock time and date at job start Tue Mar 31 2020 17:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.89789 * 2 1 4 4 O 1.43236 * 109.82659 * 120.93010 * 2 1 3 5 5 C 1.43653 * 109.96906 * 117.80157 * 4 2 1 6 6 C 1.54947 * 105.13482 * 24.42414 * 5 4 2 7 7 C 1.54384 * 109.82611 * 239.06290 * 2 1 3 8 8 H 1.08994 * 110.85017 * 337.32418 * 7 2 1 9 9 C 1.50706 * 111.01770 * 100.86418 * 7 2 1 10 10 O 1.20823 * 119.99913 * 354.38355 * 9 7 2 11 11 O 1.34225 * 119.99534 * 174.37895 * 9 7 2 12 12 C 1.45208 * 116.99922 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46881 * 180.02562 * 12 11 9 14 14 O 1.21279 * 120.00331 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99400 * 180.02562 * 13 12 11 16 16 C 1.39240 * 119.99616 * 175.71061 * 15 13 12 17 17 C 1.39479 * 119.82894 * 215.01443 * 16 15 13 18 18 C 1.36384 * 120.16425 * 179.71718 * 17 16 15 19 19 C 1.40867 * 119.82888 * 0.53332 * 18 17 16 20 20 C 1.41146 * 120.16663 * 179.76447 * 19 18 17 21 21 H 1.07996 * 120.00410 * 214.76663 * 20 19 18 22 22 C 1.39914 * 119.99825 * 34.75950 * 20 19 18 23 23 N 1.30870 * 119.99895 * 355.55990 * 22 20 19 24 24 Si 1.86798 * 119.99863 * 175.56236 * 22 20 19 25 25 H 1.48507 * 109.47141 * 89.99876 * 24 22 20 26 26 H 1.48496 * 109.47171 * 209.99809 * 24 22 20 27 27 H 1.48498 * 109.47326 * 330.00305 * 24 22 20 28 28 C 1.40870 * 119.67203 * 359.74045 * 19 18 17 29 29 C 1.36375 * 119.82862 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.46888 * 300.52843 * 1 2 3 31 31 H 1.09002 * 109.46880 * 60.51580 * 1 2 3 32 32 H 1.08997 * 109.47488 * 180.52129 * 1 2 3 33 33 H 1.08996 * 110.31102 * 143.34180 * 5 4 2 34 34 H 1.09002 * 110.30579 * 265.51162 * 5 4 2 35 35 H 1.09006 * 111.12336 * 81.47807 * 6 5 4 36 36 H 1.09002 * 111.12428 * 205.59202 * 6 5 4 37 37 H 1.08998 * 109.46813 * 300.00483 * 12 11 9 38 38 H 1.08996 * 109.46903 * 60.00135 * 12 11 9 39 39 H 0.96997 * 119.99848 * 355.70533 * 15 13 12 40 40 H 1.07994 * 119.91773 * 0.02562 * 17 16 15 41 41 H 1.07997 * 120.08448 * 180.24962 * 18 17 16 42 42 H 0.96998 * 119.99664 * 180.02562 * 23 22 20 43 43 H 1.08000 * 120.08629 * 180.02562 * 28 19 18 44 44 H 1.08001 * 119.91531 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0159 -0.6926 1.1558 5 6 2.7747 -1.8445 0.7546 6 6 3.2729 -1.5222 -0.6767 7 6 2.0537 -0.7466 -1.2457 8 1 1.3011 -1.4349 -1.6303 9 6 2.4864 0.2232 -2.3150 10 8 2.3018 1.4080 -2.1665 11 8 3.0770 -0.2293 -3.4322 12 6 3.4669 0.7616 -4.4194 13 6 4.1085 0.0727 -5.5962 14 8 4.2260 -1.1344 -5.6022 15 7 4.5526 0.7982 -6.6417 16 6 5.2250 0.1722 -7.6879 17 6 6.2647 0.8353 -8.3398 18 6 6.9318 0.2263 -9.3617 19 6 6.5610 -1.0713 -9.7656 20 6 7.2432 -1.7062 -10.8256 21 1 6.7074 -2.3594 -11.4984 22 6 8.6138 -1.4894 -11.0048 23 7 9.2454 -0.6316 -10.2446 24 14 9.5419 -2.4242 -12.3293 25 1 9.5065 -1.6519 -13.5973 26 1 10.9521 -2.6145 -11.9048 27 1 8.9049 -3.7491 -12.5388 28 6 5.5061 -1.7322 -9.1062 29 6 4.8516 -1.1123 -8.0829 30 1 -0.3633 0.5220 0.8852 31 1 -0.3633 0.5058 -0.8946 32 1 -0.3634 -1.0276 0.0093 33 1 3.6209 -1.9925 1.4255 34 1 2.1399 -2.7306 0.7438 35 1 4.1621 -0.8922 -0.6506 36 1 3.4578 -2.4350 -1.2431 37 1 2.5848 1.3070 -4.7547 38 1 4.1773 1.4581 -3.9741 39 1 4.4036 1.7564 -6.6652 40 1 6.5454 1.8314 -8.0313 41 1 7.7392 0.7393 -9.8628 42 1 10.1955 -0.4810 -10.3692 43 1 5.2166 -2.7273 -9.4101 44 1 4.0429 -1.6179 -7.5760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771084634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:34 Heat of formation + Delta-G solvation = -142.933304 kcal Electronic energy + Delta-G solvation = -27364.737893 eV Core-core repulsion = 23247.104833 eV Total energy + Delta-G solvation = -4117.633060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26060 -39.91221 -39.26890 -37.40797 -36.56606 -34.52894 -33.13703 -33.00736 -31.88342 -29.95134 -29.55956 -28.34722 -26.98907 -24.86473 -23.35577 -22.19599 -21.71477 -20.91758 -20.59220 -19.84592 -18.44549 -17.62357 -17.36671 -17.12510 -16.70907 -16.48596 -16.09811 -15.32975 -15.21902 -14.96562 -14.73126 -14.22766 -14.03280 -13.87991 -13.46524 -13.25383 -12.94443 -12.76142 -12.67994 -12.51791 -12.37997 -12.18056 -11.89489 -11.76932 -11.44655 -11.42718 -11.35282 -11.21375 -11.11563 -10.95785 -10.80286 -10.77421 -10.09552 -9.92836 -9.56521 -9.52793 -9.21541 -8.96835 -7.61372 -6.95024 -6.67167 -4.39988 1.79664 2.03487 2.42104 2.92013 3.03215 3.07043 3.10608 3.23116 3.30871 3.56372 3.89870 3.94175 4.20810 4.30868 4.57193 4.63196 4.66407 4.74797 4.81172 4.90728 4.93371 4.95357 5.15496 5.21802 5.31583 5.45403 5.52141 5.59103 5.70076 5.79396 6.01884 6.12914 6.36801 6.57097 6.64421 6.82622 7.00203 7.12336 7.22479 7.34733 7.57385 7.64687 7.78071 8.00035 8.14295 8.25159 8.52151 8.61515 8.87220 8.92959 10.23776 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.001897 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.880131 B =14756.909487 C =15159.703901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.100 0.900 4 O -0.375 6.375 5 C 0.051 3.949 6 C -0.145 4.145 7 C -0.116 4.116 8 H 0.127 0.873 9 C 0.475 3.525 10 O -0.504 6.504 11 O -0.324 6.324 12 C 0.050 3.950 13 C 0.498 3.502 14 O -0.509 6.509 15 N -0.644 5.644 16 C -0.001 4.001 17 C -0.118 4.118 18 C -0.142 4.142 19 C 0.101 3.899 20 C -0.459 4.459 21 H 0.077 0.923 22 C 0.069 3.931 23 N -0.810 5.810 24 Si 0.916 3.084 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.206 4.206 29 C -0.084 4.084 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.097 0.903 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 2.616 16.436 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.118 0.882 4 O -0.294 6.294 5 C -0.025 4.025 6 C -0.182 4.182 7 C -0.135 4.135 8 H 0.145 0.855 9 C 0.318 3.682 10 O -0.392 6.392 11 O -0.239 6.239 12 C -0.027 4.027 13 C 0.283 3.717 14 O -0.383 6.383 15 N -0.289 5.289 16 C -0.093 4.093 17 C -0.138 4.138 18 C -0.162 4.162 19 C 0.098 3.902 20 C -0.490 4.490 21 H 0.095 0.905 22 C -0.146 4.146 23 N -0.437 5.437 24 Si 0.741 3.259 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.226 4.226 29 C -0.104 4.104 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.450 2.256 16.715 20.386 hybrid contribution 0.552 0.201 -0.824 1.012 sum -10.897 2.457 15.891 19.425 Atomic orbital electron populations 1.22141 0.93972 1.02750 1.03035 1.22694 0.94934 0.96983 0.82249 0.88200 1.88478 1.71009 1.40531 1.29396 1.23420 0.95456 0.89065 0.94597 1.23300 0.96730 1.01813 0.96406 1.22674 1.00657 0.97053 0.93104 0.85513 1.23226 0.74302 0.88728 0.81964 1.90678 1.52214 1.17877 1.78450 1.86564 1.70004 1.39782 1.27504 1.22781 1.01522 0.90317 0.88080 1.19904 0.80531 0.88187 0.83061 1.90738 1.54638 1.13584 1.79373 1.42780 1.56344 1.10791 1.18998 1.17215 1.00212 0.96592 0.95230 1.20311 0.95445 0.98856 0.99156 1.21204 1.01035 0.95180 0.98773 1.17747 0.90216 0.90639 0.91555 1.19515 0.93317 1.24660 1.11478 0.90523 1.25902 0.98306 0.94453 0.95976 1.69755 1.10825 1.28614 1.34527 0.86177 0.78591 0.80560 0.80554 1.19491 1.20274 1.18687 1.20811 1.02863 0.99378 0.99515 1.20398 0.99456 0.93951 0.96566 0.91254 0.91184 0.91957 0.88954 0.91487 0.89551 0.87918 0.88258 0.88134 0.76838 0.88957 0.84934 0.91066 0.88478 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.44 37.16 0.35 -0.84 16 2 C 0.09 0.80 3.58 -26.00 -0.09 0.71 16 3 H 0.10 1.03 6.88 -51.93 -0.36 0.67 16 4 O -0.37 -3.62 11.02 -35.23 -0.39 -4.01 16 5 C 0.05 0.36 7.78 38.18 0.30 0.66 16 6 C -0.14 -1.13 6.59 -24.48 -0.16 -1.29 16 7 C -0.12 -1.01 3.02 -89.82 -0.27 -1.28 16 8 H 0.13 0.90 7.85 -51.93 -0.41 0.49 16 9 C 0.48 5.44 7.27 36.01 0.26 5.70 16 10 O -0.50 -6.54 15.24 -18.75 -0.29 -6.82 16 11 O -0.32 -4.29 9.74 -45.89 -0.45 -4.73 16 12 C 0.05 0.62 5.95 36.01 0.21 0.84 16 13 C 0.50 8.32 7.74 -10.98 -0.09 8.24 16 14 O -0.51 -10.75 13.92 -14.10 -0.20 -10.94 16 15 N -0.64 -10.67 5.30 -9.74 -0.05 -10.72 16 16 C 0.00 -0.01 6.30 -83.57 -0.53 -0.54 16 17 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 18 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 19 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 20 C -0.46 -12.04 9.03 -37.85 -0.34 -12.39 16 21 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 22 C 0.07 1.72 5.42 -17.33 -0.09 1.62 16 23 N -0.81 -20.74 10.59 55.55 0.59 -20.15 16 24 Si 0.92 18.72 29.56 -169.99 -5.03 13.69 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.21 -5.11 9.74 -39.26 -0.38 -5.50 16 29 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.00 8.13 -51.93 -0.42 0.57 16 38 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.40 4.92 8.82 -40.82 -0.36 4.56 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 42 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.11 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -31.79 372.54 -8.65 -40.44 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.96 Total: 8.83 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.50 Total: -11.21 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.54 Total: -30.87 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.32 Total: -26.51 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.79 -8.65 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.490 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds