Wall clock time and date at job start Tue Mar 31 2020 17:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.89789 * 2 1 4 4 O 1.43236 * 109.82659 * 120.93010 * 2 1 3 5 5 C 1.43653 * 109.96906 * 117.80157 * 4 2 1 6 6 C 1.54947 * 105.13482 * 24.42414 * 5 4 2 7 7 C 1.54384 * 109.82611 * 239.06290 * 2 1 3 8 8 H 1.08994 * 110.85017 * 337.32418 * 7 2 1 9 9 C 1.50706 * 111.01770 * 100.86418 * 7 2 1 10 10 O 1.20823 * 119.99913 * 354.38355 * 9 7 2 11 11 O 1.34225 * 119.99534 * 174.37895 * 9 7 2 12 12 C 1.45208 * 116.99922 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46881 * 180.02562 * 12 11 9 14 14 O 1.21279 * 120.00331 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99400 * 180.02562 * 13 12 11 16 16 C 1.39240 * 119.99616 * 175.71061 * 15 13 12 17 17 C 1.39479 * 119.82894 * 215.01443 * 16 15 13 18 18 C 1.36384 * 120.16425 * 179.71718 * 17 16 15 19 19 C 1.40867 * 119.82888 * 0.53332 * 18 17 16 20 20 C 1.41146 * 120.16663 * 179.76447 * 19 18 17 21 21 H 1.07996 * 120.00410 * 214.76663 * 20 19 18 22 22 C 1.39914 * 119.99825 * 34.75950 * 20 19 18 23 23 N 1.30870 * 119.99895 * 355.55990 * 22 20 19 24 24 Si 1.86798 * 119.99863 * 175.56236 * 22 20 19 25 25 H 1.48507 * 109.47141 * 89.99876 * 24 22 20 26 26 H 1.48496 * 109.47171 * 209.99809 * 24 22 20 27 27 H 1.48498 * 109.47326 * 330.00305 * 24 22 20 28 28 C 1.40870 * 119.67203 * 359.74045 * 19 18 17 29 29 C 1.36375 * 119.82862 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.46888 * 300.52843 * 1 2 3 31 31 H 1.09002 * 109.46880 * 60.51580 * 1 2 3 32 32 H 1.08997 * 109.47488 * 180.52129 * 1 2 3 33 33 H 1.08996 * 110.31102 * 143.34180 * 5 4 2 34 34 H 1.09002 * 110.30579 * 265.51162 * 5 4 2 35 35 H 1.09006 * 111.12336 * 81.47807 * 6 5 4 36 36 H 1.09002 * 111.12428 * 205.59202 * 6 5 4 37 37 H 1.08998 * 109.46813 * 300.00483 * 12 11 9 38 38 H 1.08996 * 109.46903 * 60.00135 * 12 11 9 39 39 H 0.96997 * 119.99848 * 355.70533 * 15 13 12 40 40 H 1.07994 * 119.91773 * 0.02562 * 17 16 15 41 41 H 1.07997 * 120.08448 * 180.24962 * 18 17 16 42 42 H 0.96998 * 119.99664 * 180.02562 * 23 22 20 43 43 H 1.08000 * 120.08629 * 180.02562 * 28 19 18 44 44 H 1.08001 * 119.91531 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0159 -0.6926 1.1558 5 6 2.7747 -1.8445 0.7546 6 6 3.2729 -1.5222 -0.6767 7 6 2.0537 -0.7466 -1.2457 8 1 1.3011 -1.4349 -1.6303 9 6 2.4864 0.2232 -2.3150 10 8 2.3018 1.4080 -2.1665 11 8 3.0770 -0.2293 -3.4322 12 6 3.4669 0.7616 -4.4194 13 6 4.1085 0.0727 -5.5962 14 8 4.2260 -1.1344 -5.6022 15 7 4.5526 0.7982 -6.6417 16 6 5.2250 0.1722 -7.6879 17 6 6.2647 0.8353 -8.3398 18 6 6.9318 0.2263 -9.3617 19 6 6.5610 -1.0713 -9.7656 20 6 7.2432 -1.7062 -10.8256 21 1 6.7074 -2.3594 -11.4984 22 6 8.6138 -1.4894 -11.0048 23 7 9.2454 -0.6316 -10.2446 24 14 9.5419 -2.4242 -12.3293 25 1 9.5065 -1.6519 -13.5973 26 1 10.9521 -2.6145 -11.9048 27 1 8.9049 -3.7491 -12.5388 28 6 5.5061 -1.7322 -9.1062 29 6 4.8516 -1.1123 -8.0829 30 1 -0.3633 0.5220 0.8852 31 1 -0.3633 0.5058 -0.8946 32 1 -0.3634 -1.0276 0.0093 33 1 3.6209 -1.9925 1.4255 34 1 2.1399 -2.7306 0.7438 35 1 4.1621 -0.8922 -0.6506 36 1 3.4578 -2.4350 -1.2431 37 1 2.5848 1.3070 -4.7547 38 1 4.1773 1.4581 -3.9741 39 1 4.4036 1.7564 -6.6652 40 1 6.5454 1.8314 -8.0313 41 1 7.7392 0.7393 -9.8628 42 1 10.1955 -0.4810 -10.3692 43 1 5.2166 -2.7273 -9.4101 44 1 4.0429 -1.6179 -7.5760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771084634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:33 Heat of formation + Delta-G solvation = -161.433196 kcal Electronic energy + Delta-G solvation = -27365.540108 eV Core-core repulsion = 23247.104833 eV Total energy + Delta-G solvation = -4118.435275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15814 -41.22734 -40.17978 -39.07339 -37.62375 -36.19672 -34.78348 -33.81520 -32.48104 -31.58663 -31.28726 -29.75029 -27.74686 -26.55973 -24.20550 -23.44419 -22.85453 -22.57473 -21.44028 -21.32975 -19.36169 -19.21777 -18.84544 -18.04075 -17.74377 -17.70820 -17.16980 -16.99591 -16.31815 -16.06602 -15.71608 -15.51033 -15.18779 -14.90982 -14.79057 -14.50199 -14.28118 -14.00703 -13.92287 -13.61090 -13.55778 -13.28983 -13.25477 -12.96371 -12.87706 -12.79195 -12.54161 -12.48934 -12.05798 -12.00670 -11.94073 -11.80677 -11.66256 -11.41358 -11.24359 -10.87687 -10.65733 -10.56490 -9.48537 -8.77550 -8.51993 -6.34759 0.72917 0.92272 1.09127 1.12440 1.39764 1.40894 1.52830 1.66734 2.23320 2.32283 2.70316 2.78833 3.24977 3.46999 3.54841 3.59637 3.68170 3.92284 3.98383 4.00996 4.09105 4.18184 4.32639 4.38561 4.50726 4.57095 4.67164 4.79820 4.86790 4.91454 4.94719 5.06946 5.09352 5.12077 5.14483 5.23651 5.30505 5.40195 5.68033 5.87048 5.95242 5.98589 6.11325 6.36960 6.43641 6.60618 6.66910 6.95402 6.97184 7.24540 8.40588 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.001897 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.880131 B =14756.909487 C =15159.703901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 H 0.082 0.918 4 O -0.393 6.393 5 C 0.050 3.950 6 C -0.144 4.144 7 C -0.114 4.114 8 H 0.147 0.853 9 C 0.479 3.521 10 O -0.521 6.521 11 O -0.341 6.341 12 C 0.058 3.942 13 C 0.501 3.499 14 O -0.555 6.555 15 N -0.635 5.635 16 C 0.018 3.982 17 C -0.115 4.115 18 C -0.160 4.160 19 C 0.068 3.932 20 C -0.496 4.496 21 H 0.073 0.927 22 C 0.027 3.973 23 N -0.840 5.840 24 Si 0.988 3.012 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.263 1.263 28 C -0.221 4.221 29 C -0.095 4.095 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.422 0.578 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.285 0.715 43 H 0.096 0.904 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 3.139 17.550 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.100 0.900 4 O -0.313 6.313 5 C -0.026 4.026 6 C -0.181 4.181 7 C -0.133 4.133 8 H 0.164 0.836 9 C 0.323 3.677 10 O -0.410 6.410 11 O -0.257 6.257 12 C -0.019 4.019 13 C 0.288 3.712 14 O -0.433 6.433 15 N -0.282 5.282 16 C -0.075 4.075 17 C -0.135 4.135 18 C -0.180 4.180 19 C 0.065 3.935 20 C -0.527 4.527 21 H 0.091 0.909 22 C -0.185 4.185 23 N -0.467 5.467 24 Si 0.809 3.191 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.187 1.187 28 C -0.241 4.241 29 C -0.115 4.115 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.260 0.740 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.090 2.828 17.854 21.747 hybrid contribution 0.640 0.101 -1.010 1.200 sum -11.450 2.930 16.844 20.577 Atomic orbital electron populations 1.22123 0.92766 1.03547 1.03168 1.22655 0.95853 0.96099 0.82222 0.89969 1.88458 1.71428 1.41455 1.29924 1.23582 0.95981 0.88835 0.94216 1.23313 0.96027 1.01810 0.96995 1.22790 1.01483 0.96829 0.92177 0.83561 1.23649 0.73501 0.88942 0.81630 1.90672 1.52935 1.18702 1.78642 1.86558 1.70434 1.40504 1.28164 1.22754 1.03000 0.89666 0.86445 1.20636 0.79213 0.87643 0.83710 1.90726 1.56302 1.15903 1.80365 1.42651 1.55634 1.12029 1.17905 1.17250 0.99279 0.95722 0.95291 1.20569 0.94717 1.00199 0.97985 1.21193 1.01581 0.95108 1.00165 1.18062 0.91198 0.91606 0.92585 1.19732 0.94542 1.25965 1.12421 0.90888 1.26743 0.98574 0.95121 0.98049 1.69816 1.11397 1.29672 1.35847 0.85104 0.77171 0.79006 0.77805 1.18412 1.19437 1.18689 1.20934 1.03195 0.99711 1.00270 1.20524 0.99643 0.95071 0.96299 0.91212 0.90983 0.90813 0.87874 0.89776 0.90461 0.87145 0.85279 0.85753 0.73988 0.85453 0.86249 0.90431 0.88542 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.44 71.98 0.68 -1.39 16 2 C 0.09 1.48 3.58 31.07 0.11 1.59 16 3 H 0.08 1.64 6.88 -2.39 -0.02 1.62 16 4 O -0.39 -7.02 11.02 -148.98 -1.64 -8.66 16 5 C 0.05 0.61 7.78 72.65 0.57 1.17 16 6 C -0.14 -2.01 6.59 32.05 0.21 -1.80 16 7 C -0.11 -1.78 3.02 -10.28 -0.03 -1.81 16 8 H 0.15 1.71 7.85 -2.39 -0.02 1.69 16 9 C 0.48 10.06 7.27 71.24 0.52 10.58 16 10 O -0.52 -12.51 15.24 21.97 0.33 -12.18 16 11 O -0.34 -8.32 9.74 -45.02 -0.44 -8.76 16 12 C 0.06 1.26 5.95 71.24 0.42 1.68 16 13 C 0.50 15.69 7.74 87.66 0.68 16.37 16 14 O -0.56 -23.01 13.92 15.77 0.22 -22.80 16 15 N -0.64 -19.46 5.30 -303.11 -1.61 -21.06 16 16 C 0.02 0.74 6.30 38.56 0.24 0.99 16 17 C -0.11 -4.95 9.90 22.14 0.22 -4.73 16 18 C -0.16 -8.20 8.61 22.48 0.19 -8.01 16 19 C 0.07 3.70 5.55 -21.28 -0.12 3.58 16 20 C -0.50 -26.97 9.03 23.39 0.21 -26.76 16 21 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 22 C 0.03 1.38 5.42 85.24 0.46 1.84 16 23 N -0.84 -43.79 10.59 21.82 0.23 -43.56 16 24 Si 0.99 38.74 29.56 68.60 2.03 40.76 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 28 C -0.22 -11.35 9.74 22.48 0.22 -11.13 16 29 C -0.10 -4.49 8.61 22.13 0.19 -4.30 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.21 8.04 -2.38 -0.02 1.19 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.13 2.09 8.13 -2.39 -0.02 2.07 16 38 H 0.12 2.17 8.13 -2.39 -0.02 2.15 16 39 H 0.42 8.94 8.82 -92.71 -0.82 8.12 16 40 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 42 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 43 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 44 H 0.11 5.06 6.22 -2.91 -0.02 5.04 16 Total: -1.00 -70.72 372.54 4.12 -66.60 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.22 Total: 31.80 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.78 Total: -22.14 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -1.38 Total: -64.63 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -1.53 Total: -52.39 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.76 kcal Total: -70.72 4.12 -66.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771084634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.835 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds