Wall clock time and date at job start Tue Mar 31 2020 17:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47389 * 2 1 4 4 C 1.53005 * 109.47163 * 119.99897 * 2 1 3 5 5 C 1.52999 * 109.47376 * 180.02562 * 4 2 1 6 6 C 1.53010 * 109.47018 * 299.99880 * 5 4 2 7 7 C 1.53000 * 109.46667 * 59.99989 * 6 5 4 8 8 C 1.52999 * 109.47411 * 299.99770 * 7 6 5 9 9 H 1.08998 * 109.46863 * 180.02562 * 8 7 6 10 10 O 1.42897 * 109.47181 * 300.00504 * 8 7 6 11 11 C 1.42901 * 113.99852 * 269.99672 * 10 8 7 12 12 C 1.50698 * 109.46965 * 179.97438 * 11 10 8 13 13 O 1.21278 * 120.00403 * 0.02562 * 12 11 10 14 14 N 1.34784 * 120.00269 * 179.97438 * 12 11 10 15 15 S 1.65595 * 120.00181 * 180.02562 * 14 12 11 16 16 O 1.42093 * 104.27935 * 308.92898 * 15 14 12 17 17 O 1.42105 * 104.27413 * 181.06948 * 15 14 12 18 18 C 1.81401 * 104.44822 * 65.00367 * 15 14 12 19 19 C 1.52997 * 109.47149 * 179.97438 * 18 15 14 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46616 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47104 * 119.99966 * 24 22 20 27 27 H 1.48489 * 109.47200 * 240.00246 * 24 22 20 28 28 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47199 * 300.00056 * 1 2 3 30 30 H 1.08998 * 109.46651 * 60.00133 * 1 2 3 31 31 H 1.09005 * 109.46753 * 299.99956 * 4 2 1 32 32 H 1.09000 * 109.46885 * 60.00165 * 4 2 1 33 33 H 1.08996 * 109.47269 * 59.99558 * 5 4 2 34 34 H 1.08995 * 109.47351 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.46739 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46838 * 299.99942 * 6 5 4 37 37 H 1.09005 * 109.46470 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47530 * 60.00377 * 7 6 5 39 39 H 1.09001 * 109.46993 * 60.00253 * 11 10 8 40 40 H 1.08994 * 109.47197 * 299.99971 * 11 10 8 41 41 H 0.96997 * 119.99484 * 0.02562 * 14 12 11 42 42 H 1.09002 * 109.47085 * 299.99812 * 18 15 14 43 43 H 1.09001 * 109.47417 * 59.99938 * 18 15 14 44 44 H 1.09002 * 109.47153 * 299.99990 * 19 18 15 45 45 H 1.08998 * 109.47533 * 59.99620 * 19 18 15 46 46 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0806 -1.4417 0.0004 7 6 3.5705 -0.7204 -1.2488 8 6 2.0406 -0.7209 -1.2492 9 1 1.6773 -0.2075 -2.1394 10 8 1.5647 -2.0684 -1.2494 11 6 1.3714 -2.6162 -2.5550 12 6 0.8717 -4.0330 -2.4363 13 8 0.6977 -4.5250 -1.3415 14 7 0.6171 -4.7531 -3.5468 15 16 0.0674 -6.3097 -3.4163 16 8 0.9840 -6.9317 -2.5264 17 8 -0.0612 -6.7498 -4.7614 18 6 -1.5645 -6.1499 -2.6403 19 6 -2.1837 -7.5378 -2.4643 20 6 -3.5390 -7.4052 -1.8191 21 1 -3.9209 -6.4285 -1.5607 22 6 -4.2922 -8.5305 -1.5595 23 7 -3.8274 -9.7198 -1.8745 24 14 -5.9720 -8.3661 -0.7590 25 1 -6.2611 -6.9318 -0.5055 26 1 -7.0080 -8.9273 -1.6628 27 1 -5.9822 -9.1085 0.5270 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6766 -0.2073 2.1393 32 1 1.6767 -1.7489 1.2493 33 1 3.9330 0.3070 1.2498 34 1 3.9333 -1.2341 2.1398 35 1 5.1705 -1.4409 0.0005 36 1 3.7176 -2.4694 0.0002 37 1 3.9339 -1.2343 -2.1388 38 1 3.9335 0.3073 -1.2487 39 1 2.3178 -2.6093 -3.0957 40 1 0.6395 -2.0165 -3.0960 41 1 0.7558 -4.3596 -4.4224 42 1 -1.4583 -5.6728 -1.6660 43 1 -2.2103 -5.5420 -3.2740 44 1 -2.2899 -8.0145 -3.4388 45 1 -1.5381 -8.1461 -1.8308 46 1 -4.3574 -10.5115 -1.6922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776117307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:11 Heat of formation + Delta-G solvation = -184.538258 kcal Electronic energy + Delta-G solvation = -27463.901044 eV Core-core repulsion = 23479.907810 eV Total energy + Delta-G solvation = -3983.993235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38040 -39.47232 -36.74202 -36.25447 -35.63232 -34.47789 -33.89044 -32.84997 -31.18078 -30.54186 -28.39197 -26.32826 -25.61732 -22.83900 -22.11496 -21.65285 -21.45548 -19.94580 -19.37385 -18.08975 -17.53114 -16.81374 -16.43790 -16.34234 -15.72255 -15.61168 -15.06313 -14.97477 -14.76297 -14.53592 -14.29075 -13.94764 -13.54745 -13.36087 -13.30565 -12.84064 -12.55576 -12.43416 -12.37067 -11.93527 -11.82121 -11.80145 -11.75598 -11.73542 -11.62875 -11.09871 -11.08730 -10.99888 -10.87408 -10.76529 -10.69897 -10.41029 -10.35210 -10.23719 -10.15059 -9.75053 -9.70304 -9.16842 -8.49335 -6.11450 -4.16731 0.46668 2.04496 2.52493 3.27257 3.34341 3.37012 3.38641 4.00978 4.16729 4.38417 4.39911 4.41713 4.54121 4.61293 4.71011 4.80782 4.84742 4.89916 4.92051 5.04782 5.16791 5.23118 5.23785 5.24046 5.39428 5.55291 5.58603 5.59178 5.68498 5.72238 5.72993 5.90495 5.96230 6.03982 6.07783 6.15496 6.33062 6.45216 6.54545 6.84174 7.28987 7.35599 7.47463 7.82016 8.17528 8.86501 9.47876 10.99735 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002928 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.237081 B = 9561.376210 C =10803.324967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.142 4.142 8 C 0.092 3.908 9 H 0.063 0.937 10 O -0.346 6.346 11 C 0.041 3.959 12 C 0.532 3.468 13 O -0.465 6.465 14 N -1.059 6.059 15 S 2.566 3.434 16 O -0.937 6.937 17 O -0.954 6.954 18 C -0.575 4.575 19 C 0.029 3.971 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.901 3.099 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.428 0.572 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 23.634 -1.433 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.179 4.179 8 C 0.034 3.966 9 H 0.081 0.919 10 O -0.265 6.265 11 C -0.040 4.040 12 C 0.316 3.684 13 O -0.333 6.333 14 N -0.821 5.821 15 S 2.666 3.334 16 O -0.927 6.927 17 O -0.944 6.944 18 C -0.709 4.709 19 C -0.010 4.010 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.262 0.738 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.224 22.251 -0.702 26.418 hybrid contribution -1.165 0.786 -0.230 1.424 sum 13.059 23.037 -0.932 26.498 Atomic orbital electron populations 1.21815 0.94523 1.03072 1.01282 1.21216 0.96337 0.98412 0.94262 0.90325 1.21557 0.95168 1.02052 0.96465 1.21514 0.95927 1.00085 0.97982 1.21450 0.99577 1.00681 0.93828 1.22042 0.95616 1.01226 0.99039 1.22234 0.93302 0.82632 0.98446 0.91936 1.88079 1.86488 1.27817 1.24068 1.22341 1.01767 0.91932 0.88009 1.20220 0.76392 0.88191 0.83600 1.90943 1.46407 1.70711 1.25245 1.55435 1.74945 1.36355 1.15394 1.06733 0.79104 0.72267 0.75289 1.93601 1.60745 1.71702 1.66632 1.93592 1.87962 1.77532 1.35329 1.30338 1.16473 1.11438 1.12701 1.18999 0.97394 0.85605 0.99019 1.21017 1.00682 0.93384 1.40701 0.91891 1.25069 0.98654 0.95196 0.95584 1.69968 1.37969 0.97848 1.47070 0.86386 0.83361 0.78302 0.79089 1.19604 1.20820 1.20745 0.91298 0.92644 0.93087 0.92225 0.90402 0.92542 0.92009 0.92387 0.90731 0.91855 0.91083 0.89618 0.89363 0.73750 0.85002 0.86022 0.94741 0.94544 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.05 37.16 0.34 -0.90 16 2 C -0.08 -0.65 2.55 -90.62 -0.23 -0.88 16 3 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.11 -1.02 5.06 -26.73 -0.14 -1.16 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -0.99 5.78 -26.73 -0.15 -1.15 16 7 C -0.14 -0.99 5.63 -26.73 -0.15 -1.14 16 8 C 0.09 0.71 2.35 -26.73 -0.06 0.65 16 9 H 0.06 0.37 7.78 -51.93 -0.40 -0.04 16 10 O -0.35 -3.70 7.50 -55.14 -0.41 -4.12 16 11 C 0.04 0.36 6.23 36.00 0.22 0.58 16 12 C 0.53 7.05 7.64 -10.98 -0.08 6.96 16 13 O -0.46 -8.43 14.60 -22.95 -0.34 -8.77 16 14 N -1.06 -12.93 5.60 31.22 0.17 -12.76 16 15 S 2.57 46.45 5.11 -107.50 -0.55 45.90 16 16 O -0.94 -20.67 17.04 -64.79 -1.10 -21.78 16 17 O -0.95 -18.66 18.08 -57.54 -1.04 -19.70 16 18 C -0.57 -11.45 5.82 37.16 0.22 -11.24 16 19 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 20 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 21 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 37 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 40 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 41 H 0.43 3.20 8.79 -34.47 -0.30 2.90 16 42 H 0.13 2.61 7.19 -51.92 -0.37 2.24 16 43 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 44 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -37.47 383.90 -10.22 -47.69 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.71 Total: -0.66 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.75 Total: -22.09 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.91 Total: -38.74 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -2.89 Total: -54.36 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 46.45 SS G_CDS: -0.55 Total: 45.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.47 -10.22 -47.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776117307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.846 kcal (2) G-P(sol) polarization free energy of solvation -37.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds