Wall clock time and date at job start Tue Mar 31 2020 17:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47083 * 2 1 4 4 C 1.52995 * 109.47483 * 240.00018 * 2 1 3 5 5 C 1.52998 * 109.47483 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47187 * 59.99497 * 5 4 2 7 7 C 1.52995 * 109.47320 * 300.00603 * 6 5 4 8 8 C 1.52998 * 109.47187 * 119.99515 * 2 1 3 9 9 H 1.08998 * 109.47134 * 60.00593 * 8 2 1 10 10 O 1.42901 * 109.47477 * 300.00390 * 8 2 1 11 11 C 1.42898 * 114.00270 * 149.99901 * 10 8 2 12 12 C 1.50695 * 109.47073 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00549 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99995 * 180.02562 * 12 11 10 15 15 S 1.65603 * 120.00438 * 179.97438 * 14 12 11 16 16 O 1.42103 * 104.27354 * 308.92891 * 15 14 12 17 17 O 1.42090 * 104.28068 * 181.06787 * 15 14 12 18 18 C 1.81399 * 104.44799 * 64.99515 * 15 14 12 19 19 C 1.53000 * 109.47309 * 180.02562 * 18 15 14 20 20 C 1.50696 * 109.47457 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99956 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 60.00735 * 24 22 20 26 26 H 1.48503 * 109.47399 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47295 * 300.00832 * 24 22 20 28 28 H 1.09003 * 109.47109 * 300.00098 * 1 2 3 29 29 H 1.09000 * 109.47460 * 60.00238 * 1 2 3 30 30 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46982 * 59.99451 * 4 2 1 32 32 H 1.08999 * 109.46888 * 300.00054 * 4 2 1 33 33 H 1.08999 * 109.47103 * 299.99923 * 5 4 2 34 34 H 1.09003 * 109.47109 * 179.97438 * 5 4 2 35 35 H 1.09003 * 109.47497 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47134 * 60.00593 * 6 5 4 37 37 H 1.09008 * 109.46946 * 299.99513 * 7 6 5 38 38 H 1.09007 * 109.47343 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46947 * 59.99764 * 11 10 8 40 40 H 1.09007 * 109.46697 * 300.00067 * 11 10 8 41 41 H 0.97001 * 120.00140 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.47190 * 60.00158 * 18 15 14 43 43 H 1.09000 * 109.47070 * 300.00297 * 18 15 14 44 44 H 1.09001 * 109.47194 * 59.99758 * 19 18 15 45 45 H 1.09004 * 109.46724 * 300.00417 * 19 18 15 46 46 H 0.97000 * 119.99806 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0806 -1.4414 -0.0002 7 6 3.5705 -0.7202 1.2490 8 6 2.0400 -0.7211 1.2493 9 1 1.6767 -1.7488 1.2493 10 8 1.5636 -0.0475 2.4161 11 6 1.3699 -0.9040 3.5434 12 6 0.8685 -0.0929 4.7102 13 8 0.6947 1.1013 4.5887 14 7 0.6143 -0.6942 5.8893 15 16 0.0639 0.1972 7.1719 16 8 0.9800 1.2796 7.2651 17 8 -0.0641 -0.7471 8.2258 18 6 -1.5682 0.7883 6.6451 19 6 -2.1875 1.6357 7.7583 20 6 -3.5431 2.1273 7.3204 21 1 -3.9250 1.8615 6.3458 22 6 -4.2962 2.9154 8.1645 23 7 -3.8315 3.2387 9.3515 24 14 -5.9769 3.5242 7.6220 25 1 -6.8561 2.3617 7.3371 26 1 -6.5779 4.3468 8.7025 27 1 -5.8327 4.3482 6.3951 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 -0.2074 -2.1392 32 1 1.6767 -1.7489 -1.2492 33 1 3.9330 0.3071 -1.2497 34 1 3.9334 -1.2349 -2.1393 35 1 5.1706 -1.4406 -0.0002 36 1 3.7177 -2.4692 0.0000 37 1 3.9335 0.3077 1.2487 38 1 3.9339 -1.2340 2.1390 39 1 2.3162 -1.3757 3.8081 40 1 0.6380 -1.6725 3.2943 41 1 0.7537 -1.6492 5.9867 42 1 -2.2134 -0.0649 6.4358 43 1 -1.4623 1.3932 5.7446 44 1 -1.5421 2.4889 7.9672 45 1 -2.2933 1.0310 8.6590 46 1 -2.9586 2.9229 9.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776117311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:17 Heat of formation + Delta-G solvation = -190.001799 kcal Electronic energy + Delta-G solvation = -27104.342239 eV Core-core repulsion = 23120.112087 eV Total energy + Delta-G solvation = -3984.230152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39469 -39.51024 -36.89535 -36.66099 -35.73728 -34.56758 -34.23847 -32.95030 -31.05822 -30.58890 -28.36402 -26.42257 -25.09587 -22.91498 -22.13647 -21.81721 -21.64242 -20.29973 -19.54321 -18.10041 -17.76495 -17.04308 -16.59793 -16.51607 -15.81725 -15.71476 -15.23335 -15.01099 -14.77848 -14.42364 -14.34838 -13.76826 -13.63875 -13.53264 -13.34757 -12.92639 -12.89184 -12.60885 -12.47320 -12.24183 -12.12504 -11.89709 -11.84826 -11.73787 -11.49658 -11.25640 -11.06537 -11.00264 -10.95470 -10.79170 -10.66109 -10.55989 -10.50297 -10.29900 -10.18352 -10.00403 -9.79778 -8.69230 -8.44665 -6.46479 -4.19054 0.36601 1.97812 2.43120 3.26650 3.40505 3.43250 3.61898 3.91168 4.08706 4.28131 4.28835 4.48409 4.50256 4.51723 4.63141 4.69548 4.75885 4.81295 4.82438 4.85684 5.01731 5.06889 5.08969 5.29044 5.30617 5.38772 5.48164 5.54941 5.56115 5.57735 5.65648 5.70093 5.74971 5.85936 5.87072 6.01416 6.12231 6.30677 6.46294 6.79398 6.95265 7.06174 7.40917 7.96306 8.31083 8.73638 9.52840 10.93494 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002643 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.098206 B =10591.379872 C =12013.333924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.145 4.145 8 C 0.094 3.906 9 H 0.063 0.937 10 O -0.353 6.353 11 C 0.043 3.957 12 C 0.531 3.469 13 O -0.465 6.465 14 N -1.058 6.058 15 S 2.567 3.433 16 O -0.936 6.936 17 O -0.953 6.953 18 C -0.569 4.569 19 C 0.017 3.983 20 C -0.599 4.599 21 H 0.056 0.944 22 C 0.016 3.984 23 N -0.905 5.905 24 Si 1.074 2.926 25 H -0.286 1.286 26 H -0.280 1.280 27 H -0.286 1.286 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.429 0.571 42 H 0.123 0.877 43 H 0.133 0.867 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.152 -14.886 -21.272 29.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.183 4.183 8 C 0.036 3.964 9 H 0.081 0.919 10 O -0.271 6.271 11 C -0.039 4.039 12 C 0.316 3.684 13 O -0.333 6.333 14 N -0.821 5.821 15 S 2.667 3.333 16 O -0.926 6.926 17 O -0.944 6.944 18 C -0.703 4.703 19 C -0.023 4.023 20 C -0.638 4.638 21 H 0.074 0.926 22 C -0.189 4.189 23 N -0.540 5.540 24 Si 0.901 3.099 25 H -0.213 1.213 26 H -0.205 1.205 27 H -0.212 1.212 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.263 0.737 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.239 -12.760 -20.112 27.250 hybrid contribution 1.117 -1.871 -0.867 2.345 sum 14.356 -14.631 -20.979 29.330 Atomic orbital electron populations 1.21804 0.94395 1.01695 1.02691 1.21199 0.96451 1.00520 0.92463 0.90092 1.21593 0.95421 1.00711 0.97235 1.21588 0.95683 1.01114 0.97728 1.21491 1.00541 0.99215 0.94147 1.22094 0.95669 1.02233 0.98264 1.22268 0.93193 0.95831 0.85116 0.91871 1.88070 1.86549 1.33541 1.18928 1.22331 1.01837 0.92993 0.86708 1.20238 0.76385 0.88407 0.83385 1.90948 1.46411 1.13854 1.82094 1.55395 1.74926 1.24321 1.27421 1.06702 0.79022 0.74372 0.73232 1.93608 1.60671 1.54188 1.84171 1.93594 1.87931 1.61838 1.51010 1.30221 1.16530 1.11319 1.12268 1.19095 0.98181 0.93994 0.90998 1.21815 1.01470 1.36058 1.04464 0.92582 1.25985 1.04669 0.94295 0.93905 1.70783 1.20502 1.43527 1.19201 0.83473 0.74283 0.76442 0.75675 1.21290 1.20539 1.21215 0.91339 0.92570 0.93067 0.91273 0.91841 0.91668 0.91823 0.91613 0.91950 0.90687 0.91743 0.89495 0.89275 0.73660 0.85873 0.84852 0.95468 0.95683 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.05 37.16 0.34 -0.91 16 2 C -0.09 -0.70 2.46 -90.62 -0.22 -0.92 16 3 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 4 C -0.11 -0.66 5.20 -26.73 -0.14 -0.80 16 5 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 6 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 7 C -0.14 -1.04 5.54 -26.71 -0.15 -1.18 16 8 C 0.09 0.76 2.05 -26.71 -0.05 0.70 16 9 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 10 O -0.35 -3.97 8.85 -55.14 -0.49 -4.46 16 11 C 0.04 0.39 6.23 36.00 0.22 0.61 16 12 C 0.53 7.16 7.64 -10.99 -0.08 7.07 16 13 O -0.46 -8.60 14.60 -22.96 -0.34 -8.93 16 14 N -1.06 -12.95 5.60 31.22 0.17 -12.77 16 15 S 2.57 46.19 5.11 -107.50 -0.55 45.64 16 16 O -0.94 -20.54 17.04 -64.79 -1.10 -21.64 16 17 O -0.95 -18.46 18.08 -57.54 -1.04 -19.50 16 18 C -0.57 -11.44 5.82 37.16 0.22 -11.23 16 19 C 0.02 0.43 4.29 -27.88 -0.12 0.31 16 20 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 21 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 22 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 23 N -0.90 -27.96 13.65 55.43 0.76 -27.20 16 24 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.07 0.72 7.68 -51.93 -0.40 0.33 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 0.42 7.87 -51.93 -0.41 0.02 16 39 H 0.09 0.54 7.87 -51.93 -0.41 0.13 16 40 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.43 3.19 8.79 -34.47 -0.30 2.89 16 42 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 43 H 0.13 2.69 7.19 -51.92 -0.37 2.32 16 44 H 0.03 0.74 8.01 -51.93 -0.42 0.33 16 45 H 0.03 0.66 8.01 -51.93 -0.42 0.24 16 46 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -38.58 384.67 -10.29 -48.87 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.70 Total: -0.92 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -0.72 Total: -25.02 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.93 Total: -39.97 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -2.97 Total: -54.53 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.55 Total: 45.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.58 -10.29 -48.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776117311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.134 kcal (2) G-P(sol) polarization free energy of solvation -38.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds