Wall clock time and date at job start Tue Mar 31 2020 17:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47083 * 2 1 4 4 C 1.52995 * 109.47483 * 240.00018 * 2 1 3 5 5 C 1.52998 * 109.47483 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47187 * 59.99497 * 5 4 2 7 7 C 1.52995 * 109.47320 * 300.00603 * 6 5 4 8 8 C 1.52998 * 109.47187 * 119.99515 * 2 1 3 9 9 H 1.08998 * 109.47134 * 60.00593 * 8 2 1 10 10 O 1.42901 * 109.47477 * 300.00390 * 8 2 1 11 11 C 1.42898 * 114.00270 * 149.99901 * 10 8 2 12 12 C 1.50695 * 109.47073 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00549 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99995 * 180.02562 * 12 11 10 15 15 S 1.65603 * 120.00438 * 179.97438 * 14 12 11 16 16 O 1.42103 * 104.27354 * 308.92891 * 15 14 12 17 17 O 1.42090 * 104.28068 * 181.06787 * 15 14 12 18 18 C 1.81399 * 104.44799 * 64.99515 * 15 14 12 19 19 C 1.53000 * 109.47309 * 180.02562 * 18 15 14 20 20 C 1.50696 * 109.47457 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99956 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 60.00735 * 24 22 20 26 26 H 1.48503 * 109.47399 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47295 * 300.00832 * 24 22 20 28 28 H 1.09003 * 109.47109 * 300.00098 * 1 2 3 29 29 H 1.09000 * 109.47460 * 60.00238 * 1 2 3 30 30 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46982 * 59.99451 * 4 2 1 32 32 H 1.08999 * 109.46888 * 300.00054 * 4 2 1 33 33 H 1.08999 * 109.47103 * 299.99923 * 5 4 2 34 34 H 1.09003 * 109.47109 * 179.97438 * 5 4 2 35 35 H 1.09003 * 109.47497 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47134 * 60.00593 * 6 5 4 37 37 H 1.09008 * 109.46946 * 299.99513 * 7 6 5 38 38 H 1.09007 * 109.47343 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46947 * 59.99764 * 11 10 8 40 40 H 1.09007 * 109.46697 * 300.00067 * 11 10 8 41 41 H 0.97001 * 120.00140 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.47190 * 60.00158 * 18 15 14 43 43 H 1.09000 * 109.47070 * 300.00297 * 18 15 14 44 44 H 1.09001 * 109.47194 * 59.99758 * 19 18 15 45 45 H 1.09004 * 109.46724 * 300.00417 * 19 18 15 46 46 H 0.97000 * 119.99806 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0806 -1.4414 -0.0002 7 6 3.5705 -0.7202 1.2490 8 6 2.0400 -0.7211 1.2493 9 1 1.6767 -1.7488 1.2493 10 8 1.5636 -0.0475 2.4161 11 6 1.3699 -0.9040 3.5434 12 6 0.8685 -0.0929 4.7102 13 8 0.6947 1.1013 4.5887 14 7 0.6143 -0.6942 5.8893 15 16 0.0639 0.1972 7.1719 16 8 0.9800 1.2796 7.2651 17 8 -0.0641 -0.7471 8.2258 18 6 -1.5682 0.7883 6.6451 19 6 -2.1875 1.6357 7.7583 20 6 -3.5431 2.1273 7.3204 21 1 -3.9250 1.8615 6.3458 22 6 -4.2962 2.9154 8.1645 23 7 -3.8315 3.2387 9.3515 24 14 -5.9769 3.5242 7.6220 25 1 -6.8561 2.3617 7.3371 26 1 -6.5779 4.3468 8.7025 27 1 -5.8327 4.3482 6.3951 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 -0.2074 -2.1392 32 1 1.6767 -1.7489 -1.2492 33 1 3.9330 0.3071 -1.2497 34 1 3.9334 -1.2349 -2.1393 35 1 5.1706 -1.4406 -0.0002 36 1 3.7177 -2.4692 0.0000 37 1 3.9335 0.3077 1.2487 38 1 3.9339 -1.2340 2.1390 39 1 2.3162 -1.3757 3.8081 40 1 0.6380 -1.6725 3.2943 41 1 0.7537 -1.6492 5.9867 42 1 -2.2134 -0.0649 6.4358 43 1 -1.4623 1.3932 5.7446 44 1 -1.5421 2.4889 7.9672 45 1 -2.2933 1.0310 8.6590 46 1 -2.9586 2.9229 9.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776117311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:16 Heat of formation + Delta-G solvation = -218.249075 kcal Electronic energy + Delta-G solvation = -27105.567133 eV Core-core repulsion = 23120.112087 eV Total energy + Delta-G solvation = -3985.455045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40052 -40.23109 -38.41602 -37.40050 -37.33161 -36.37528 -35.73460 -33.49284 -33.06684 -31.14508 -29.13183 -27.18158 -26.98589 -24.09610 -23.49927 -22.85970 -22.20024 -20.89712 -20.84317 -19.56441 -18.98201 -18.64887 -17.80711 -17.55328 -17.01908 -16.84031 -16.43550 -15.80029 -15.67862 -15.43129 -15.39391 -15.08753 -15.07398 -14.98075 -14.16552 -14.09908 -14.02016 -13.85563 -13.57212 -13.48875 -13.37133 -13.14174 -12.91992 -12.77995 -12.55149 -12.47737 -12.40141 -12.31494 -12.00820 -11.95279 -11.83162 -11.76079 -11.51492 -11.46431 -11.23642 -11.13371 -10.77318 -10.64955 -10.39048 -8.78782 -6.52583 -1.13490 0.89808 1.22692 1.51211 1.60261 1.79716 2.37026 2.50612 2.54566 2.99881 3.06091 3.25768 3.68609 3.74225 3.77946 3.87953 3.90833 4.00861 4.13348 4.18997 4.26068 4.29394 4.31280 4.45053 4.51083 4.54980 4.57482 4.77746 4.91796 4.93874 4.97160 5.00025 5.07020 5.13994 5.19641 5.30001 5.32248 5.39217 5.43166 5.54263 5.58541 5.76613 6.03532 6.15605 6.40569 6.42336 7.29699 8.61258 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002643 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.098206 B =10591.379872 C =12013.333924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.145 4.145 8 C 0.091 3.909 9 H 0.090 0.910 10 O -0.389 6.389 11 C 0.045 3.955 12 C 0.528 3.472 13 O -0.521 6.521 14 N -1.032 6.032 15 S 2.606 3.394 16 O -0.978 6.978 17 O -0.965 6.965 18 C -0.576 4.576 19 C 0.006 3.994 20 C -0.615 4.615 21 H 0.065 0.935 22 C -0.041 4.041 23 N -0.933 5.933 24 Si 1.123 2.877 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.454 0.546 42 H 0.153 0.847 43 H 0.130 0.870 44 H 0.000 1.000 45 H 0.014 0.986 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.142 -17.909 -23.582 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.182 4.182 8 C 0.034 3.966 9 H 0.108 0.892 10 O -0.308 6.308 11 C -0.036 4.036 12 C 0.316 3.684 13 O -0.393 6.393 14 N -0.801 5.801 15 S 2.704 3.296 16 O -0.968 6.968 17 O -0.955 6.955 18 C -0.708 4.708 19 C -0.033 4.033 20 C -0.654 4.654 21 H 0.083 0.917 22 C -0.238 4.238 23 N -0.569 5.569 24 Si 0.942 3.058 25 H -0.185 1.185 26 H -0.208 1.208 27 H -0.194 1.194 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.295 0.705 42 H 0.171 0.829 43 H 0.148 0.852 44 H 0.018 0.982 45 H 0.033 0.967 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.235 -15.838 -22.421 30.475 hybrid contribution 1.213 -0.985 -0.209 1.577 sum 14.448 -16.824 -22.630 31.684 Atomic orbital electron populations 1.21769 0.94827 1.02292 1.01422 1.21221 0.96080 0.99704 0.93875 0.92526 1.21556 0.95630 1.01131 0.96055 1.21600 0.95400 1.00721 0.98472 1.21482 1.00825 0.99636 0.93041 1.22095 0.95204 1.01312 0.99637 1.22442 0.93594 0.96738 0.83821 0.89222 1.88043 1.87075 1.35497 1.20223 1.22580 1.04607 0.92153 0.84248 1.21271 0.74820 0.88111 0.84190 1.90937 1.48955 1.16660 1.82772 1.54750 1.73911 1.25517 1.25949 1.05218 0.77379 0.73653 0.73399 1.93558 1.61406 1.56604 1.85269 1.93572 1.87778 1.61792 1.52407 1.30162 1.19154 1.11612 1.09882 1.18989 0.97535 0.93990 0.92741 1.22293 1.02574 1.35761 1.04788 0.91695 1.27675 1.08524 0.94265 0.93376 1.70920 1.20186 1.45137 1.20705 0.82887 0.70095 0.77047 0.75759 1.18520 1.20755 1.19417 0.94114 0.92332 0.91452 0.91110 0.90419 0.92850 0.90509 0.91172 0.90421 0.92951 0.90811 0.85802 0.84946 0.70504 0.82924 0.85161 0.98156 0.96743 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.05 71.98 0.65 -1.65 16 2 C -0.09 -1.33 2.46 -10.80 -0.03 -1.36 16 3 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 4 C -0.11 -1.03 5.20 30.59 0.16 -0.87 16 5 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 6 C -0.11 -0.94 5.92 30.59 0.18 -0.76 16 7 C -0.14 -1.79 5.54 30.61 0.17 -1.62 16 8 C 0.09 1.25 2.05 30.61 0.06 1.32 16 9 H 0.09 0.75 7.79 -2.39 -0.02 0.74 16 10 O -0.39 -8.14 8.85 -129.94 -1.15 -9.29 16 11 C 0.04 0.65 6.23 71.23 0.44 1.09 16 12 C 0.53 13.32 7.64 87.66 0.67 13.99 16 13 O -0.52 -19.46 14.60 24.23 0.35 -19.10 16 14 N -1.03 -22.98 5.60 -173.54 -0.97 -23.95 16 15 S 2.61 93.05 5.11 -56.49 -0.29 92.76 16 16 O -0.98 -43.90 17.04 -120.71 -2.06 -45.95 16 17 O -0.97 -36.53 18.08 -127.65 -2.31 -38.83 16 18 C -0.58 -23.29 5.82 71.98 0.42 -22.87 16 19 C 0.01 0.34 4.29 29.85 0.13 0.47 16 20 C -0.62 -35.66 9.11 25.60 0.23 -35.42 16 21 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 22 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 23 N -0.93 -59.34 13.65 21.45 0.29 -59.04 16 24 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.04 0.86 7.68 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.76 7.87 -2.38 -0.02 0.74 16 39 H 0.12 0.93 7.87 -2.39 -0.02 0.91 16 40 H 0.13 0.81 8.09 -2.38 -0.02 0.80 16 41 H 0.45 5.09 8.79 -96.75 -0.85 4.24 16 42 H 0.15 5.11 8.14 -2.39 -0.02 5.09 16 43 H 0.13 5.36 7.19 -2.39 -0.02 5.35 16 44 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 45 H 0.01 0.79 8.01 -2.39 -0.02 0.77 16 46 H 0.26 16.49 7.22 -92.71 -0.67 15.82 16 Total: -1.00 -88.18 384.67 -0.13 -88.30 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.22 Total: 13.22 kcal Atomic # 6 Polarization: -54.29 SS G_CDS: 3.73 Total: -50.55 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.68 Total: -82.99 kcal Atomic # 8 Polarization: -108.02 SS G_CDS: -5.16 Total: -113.18 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -0.29 Total: 92.76 kcal Total: -88.18 -0.13 -88.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776117311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.946 kcal (2) G-P(sol) polarization free energy of solvation -88.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds