Wall clock time and date at job start Tue Mar 31 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.46775 * 2 1 4 4 C 1.52997 * 109.47220 * 240.00389 * 2 1 3 5 5 C 1.52998 * 109.46886 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47411 * 60.00098 * 5 4 2 7 7 C 1.53005 * 109.46925 * 299.99629 * 6 5 4 8 8 H 1.08999 * 109.47069 * 299.99818 * 7 6 5 9 9 O 1.42901 * 109.47207 * 180.02562 * 7 6 5 10 10 C 1.42895 * 113.99948 * 89.99876 * 9 7 6 11 11 C 1.50706 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 S 1.65598 * 119.99746 * 180.02562 * 13 11 10 15 15 O 1.42102 * 104.27619 * 181.07419 * 14 13 11 16 16 O 1.42099 * 104.27843 * 308.92577 * 14 13 11 17 17 C 1.81398 * 104.45183 * 64.99951 * 14 13 11 18 18 C 1.52998 * 109.47017 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.46963 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99987 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00129 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00267 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46606 * 90.00335 * 23 21 19 25 25 H 1.48496 * 109.46988 * 210.00213 * 23 21 19 26 26 H 1.48496 * 109.46937 * 330.00520 * 23 21 19 27 27 C 1.52993 * 109.47387 * 119.99898 * 2 1 3 28 28 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47197 * 299.99751 * 1 2 3 30 30 H 1.09001 * 109.47201 * 60.00280 * 1 2 3 31 31 H 1.09001 * 109.47579 * 59.99564 * 4 2 1 32 32 H 1.08995 * 109.47194 * 299.99572 * 4 2 1 33 33 H 1.09003 * 109.47233 * 299.99295 * 5 4 2 34 34 H 1.09002 * 109.46863 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47293 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47703 * 59.99887 * 6 5 4 37 37 H 1.09001 * 109.46798 * 60.00190 * 10 9 7 38 38 H 1.09000 * 109.47736 * 300.00432 * 10 9 7 39 39 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 40 40 H 1.09002 * 109.47179 * 300.00163 * 17 14 13 41 41 H 1.08997 * 109.47217 * 59.99828 * 17 14 13 42 42 H 1.08997 * 109.47492 * 299.99690 * 18 17 14 43 43 H 1.09005 * 109.47026 * 60.00147 * 18 17 14 44 44 H 0.96998 * 120.00561 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.47256 * 60.00005 * 27 2 1 46 46 H 1.09002 * 109.47239 * 300.00325 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7205 -1.2495 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7202 1.2489 8 1 3.9335 0.3075 1.2487 9 8 4.0478 -1.3932 2.4157 10 6 5.3073 -0.9125 2.8896 11 6 5.7117 -1.6883 4.1166 12 8 4.9923 -2.5667 4.5430 13 7 6.8727 -1.4060 4.7402 14 16 7.3173 -2.2589 6.0881 15 8 8.5553 -1.6797 6.4768 16 8 6.1791 -2.1923 6.9363 17 6 7.5670 -3.9531 5.4898 18 6 7.9866 -4.8493 6.6567 19 6 8.1935 -6.2569 6.1598 20 1 8.0414 -6.4890 5.1160 21 6 8.5781 -7.2484 7.0374 22 7 8.7638 -6.9658 8.3083 23 14 8.8352 -8.9931 6.4213 24 1 10.2479 -9.1649 5.9971 25 1 8.5251 -9.9534 7.5107 26 1 7.9370 -9.2476 5.2665 27 6 2.0400 -0.7212 1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -0.2074 -2.1393 32 1 1.6768 -1.7488 -1.2493 33 1 3.9329 0.3073 -1.2498 34 1 3.9333 -1.2347 -2.1393 35 1 5.1705 -1.4414 -0.0008 36 1 3.7176 -2.4693 -0.0001 37 1 5.2215 0.1448 3.1405 38 1 6.0611 -1.0414 2.1129 39 1 7.4477 -0.7031 4.3993 40 1 6.6380 -4.3272 5.0597 41 1 8.3476 -3.9584 4.7291 42 1 8.9158 -4.4752 7.0864 43 1 7.2063 -4.8441 7.4177 44 1 9.0340 -7.6633 8.9258 45 1 1.6767 -1.7489 1.2492 46 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:20 Heat of formation + Delta-G solvation = -187.335592 kcal Electronic energy + Delta-G solvation = -26754.954768 eV Core-core repulsion = 22770.840232 eV Total energy + Delta-G solvation = -3984.114536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.30661 -39.43168 -37.02142 -36.67007 -35.62498 -34.47886 -33.88367 -32.72035 -31.17545 -30.68907 -28.06797 -26.79291 -25.61048 -22.82838 -22.14524 -21.63436 -21.52630 -20.22197 -19.41229 -18.04406 -17.64703 -16.82751 -16.54703 -16.25867 -15.78785 -15.46584 -15.30674 -15.00025 -14.76055 -14.57206 -14.49500 -14.23214 -13.58260 -13.42196 -13.23187 -12.82798 -12.78040 -12.54109 -12.38134 -12.21768 -11.91817 -11.79473 -11.72843 -11.62190 -11.43475 -11.33654 -11.07305 -10.99733 -10.93106 -10.87258 -10.79490 -10.73085 -10.41345 -10.35006 -10.15602 -9.81408 -9.69661 -9.17237 -8.48455 -6.10721 -4.16046 0.47385 2.04307 2.51135 3.28196 3.30642 3.34396 3.38131 4.00358 4.15659 4.26693 4.32896 4.38904 4.52247 4.61213 4.66306 4.67769 4.76571 4.79488 4.85199 4.91407 5.03651 5.06031 5.15686 5.24589 5.25889 5.33256 5.45196 5.58107 5.59179 5.63163 5.64123 5.73404 5.77210 5.83924 5.86997 5.93988 6.06555 6.45661 6.54293 6.82398 7.29580 7.36394 7.47314 7.82422 8.18196 8.86855 9.48389 11.00386 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.002443 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.941977 B =11456.423794 C =12564.449732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.145 4.145 7 C 0.089 3.911 8 H 0.063 0.937 9 O -0.356 6.356 10 C 0.043 3.957 11 C 0.531 3.469 12 O -0.465 6.465 13 N -1.058 6.058 14 S 2.567 3.433 15 O -0.953 6.953 16 O -0.937 6.937 17 C -0.575 4.575 18 C 0.029 3.971 19 C -0.518 4.518 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.112 4.112 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.428 0.572 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.265 0.735 45 H 0.075 0.925 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 18.083 -20.979 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.182 4.182 7 C 0.031 3.969 8 H 0.081 0.919 9 O -0.274 6.274 10 C -0.039 4.039 11 C 0.316 3.684 12 O -0.333 6.333 13 N -0.821 5.821 14 S 2.667 3.333 15 O -0.944 6.944 16 O -0.927 6.927 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.150 4.150 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.263 0.737 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.997 17.626 -19.546 28.524 hybrid contribution 0.762 -0.723 -1.076 1.504 sum -10.235 16.902 -20.622 28.560 Atomic orbital electron populations 1.21817 0.94752 1.02151 1.01762 1.21095 0.95856 0.99435 0.94323 0.91156 1.21653 0.95370 1.01092 0.97439 1.21487 0.95780 1.00612 0.97541 1.22082 1.00831 1.01045 0.94278 1.22224 0.95052 0.95141 0.84439 0.91933 1.88078 1.34260 1.60502 1.44525 1.22343 0.88850 0.98037 0.94646 1.20213 0.79830 0.83694 0.84695 1.90947 1.49528 1.29273 1.63581 1.55431 1.29012 1.49466 1.48170 1.06714 0.74255 0.78612 0.73728 1.93592 1.44644 1.76712 1.79441 1.93602 1.50588 1.86313 1.62168 1.30338 1.11023 1.17336 1.12278 1.18995 0.97730 0.94407 0.89851 1.20976 1.47339 0.92190 0.95299 0.91963 1.25068 0.95127 0.99454 0.94862 1.69952 1.46311 1.33834 1.02758 0.86441 0.78505 0.83635 0.78549 1.20487 1.20983 1.19706 1.21666 0.92929 1.02310 0.98088 0.92441 0.92489 0.92601 0.91842 0.91598 0.91958 0.91526 0.91702 0.90646 0.89432 0.89344 0.73734 0.85014 0.86024 0.94735 0.94537 0.92515 0.90648 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 2 C -0.09 -0.53 2.72 -90.63 -0.25 -0.77 16 3 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 4 C -0.12 -0.66 5.20 -26.73 -0.14 -0.80 16 5 C -0.12 -0.65 5.92 -26.74 -0.16 -0.81 16 6 C -0.14 -1.05 5.54 -26.73 -0.15 -1.19 16 7 C 0.09 0.72 2.61 -26.70 -0.07 0.65 16 8 H 0.06 0.39 7.78 -51.93 -0.40 -0.01 16 9 O -0.36 -4.10 9.52 -55.14 -0.53 -4.62 16 10 C 0.04 0.39 6.23 36.01 0.22 0.61 16 11 C 0.53 7.22 7.64 -10.98 -0.08 7.14 16 12 O -0.46 -8.67 14.60 -22.96 -0.34 -9.01 16 13 N -1.06 -13.03 5.60 31.22 0.17 -12.86 16 14 S 2.57 46.49 5.11 -107.50 -0.55 45.94 16 15 O -0.95 -18.61 18.08 -57.54 -1.04 -19.65 16 16 O -0.94 -20.71 17.04 -64.79 -1.10 -21.82 16 17 C -0.57 -11.50 5.82 37.16 0.22 -11.29 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 23 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.11 -0.88 4.86 -26.71 -0.13 -1.01 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 39 H 0.43 3.21 8.79 -34.47 -0.30 2.91 16 40 H 0.13 2.63 7.19 -51.92 -0.37 2.26 16 41 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -37.99 387.02 -10.35 -48.34 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.78 Total: -1.94 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.74 Total: -20.71 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.91 Total: -38.89 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -3.00 Total: -55.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 46.49 SS G_CDS: -0.55 Total: 45.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.99 -10.35 -48.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.995 kcal (2) G-P(sol) polarization free energy of solvation -37.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds