Wall clock time and date at job start Tue Mar 31 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.46775 * 2 1 4 4 C 1.52997 * 109.47220 * 240.00389 * 2 1 3 5 5 C 1.52998 * 109.46886 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47411 * 60.00098 * 5 4 2 7 7 C 1.53005 * 109.46925 * 299.99629 * 6 5 4 8 8 H 1.08999 * 109.47069 * 299.99818 * 7 6 5 9 9 O 1.42901 * 109.47207 * 180.02562 * 7 6 5 10 10 C 1.42895 * 113.99948 * 89.99876 * 9 7 6 11 11 C 1.50706 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 S 1.65598 * 119.99746 * 180.02562 * 13 11 10 15 15 O 1.42102 * 104.27619 * 181.07419 * 14 13 11 16 16 O 1.42099 * 104.27843 * 308.92577 * 14 13 11 17 17 C 1.81398 * 104.45183 * 64.99951 * 14 13 11 18 18 C 1.52998 * 109.47017 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.46963 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99987 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00129 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00267 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46606 * 90.00335 * 23 21 19 25 25 H 1.48496 * 109.46988 * 210.00213 * 23 21 19 26 26 H 1.48496 * 109.46937 * 330.00520 * 23 21 19 27 27 C 1.52993 * 109.47387 * 119.99898 * 2 1 3 28 28 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47197 * 299.99751 * 1 2 3 30 30 H 1.09001 * 109.47201 * 60.00280 * 1 2 3 31 31 H 1.09001 * 109.47579 * 59.99564 * 4 2 1 32 32 H 1.08995 * 109.47194 * 299.99572 * 4 2 1 33 33 H 1.09003 * 109.47233 * 299.99295 * 5 4 2 34 34 H 1.09002 * 109.46863 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.47293 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47703 * 59.99887 * 6 5 4 37 37 H 1.09001 * 109.46798 * 60.00190 * 10 9 7 38 38 H 1.09000 * 109.47736 * 300.00432 * 10 9 7 39 39 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 40 40 H 1.09002 * 109.47179 * 300.00163 * 17 14 13 41 41 H 1.08997 * 109.47217 * 59.99828 * 17 14 13 42 42 H 1.08997 * 109.47492 * 299.99690 * 18 17 14 43 43 H 1.09005 * 109.47026 * 60.00147 * 18 17 14 44 44 H 0.96998 * 120.00561 * 179.97438 * 22 21 19 45 45 H 1.09003 * 109.47256 * 60.00005 * 27 2 1 46 46 H 1.09002 * 109.47239 * 300.00325 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7205 -1.2495 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7202 1.2489 8 1 3.9335 0.3075 1.2487 9 8 4.0478 -1.3932 2.4157 10 6 5.3073 -0.9125 2.8896 11 6 5.7117 -1.6883 4.1166 12 8 4.9923 -2.5667 4.5430 13 7 6.8727 -1.4060 4.7402 14 16 7.3173 -2.2589 6.0881 15 8 8.5553 -1.6797 6.4768 16 8 6.1791 -2.1923 6.9363 17 6 7.5670 -3.9531 5.4898 18 6 7.9866 -4.8493 6.6567 19 6 8.1935 -6.2569 6.1598 20 1 8.0414 -6.4890 5.1160 21 6 8.5781 -7.2484 7.0374 22 7 8.7638 -6.9658 8.3083 23 14 8.8352 -8.9931 6.4213 24 1 10.2479 -9.1649 5.9971 25 1 8.5251 -9.9534 7.5107 26 1 7.9370 -9.2476 5.2665 27 6 2.0400 -0.7212 1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -0.2074 -2.1393 32 1 1.6768 -1.7488 -1.2493 33 1 3.9329 0.3073 -1.2498 34 1 3.9333 -1.2347 -2.1393 35 1 5.1705 -1.4414 -0.0008 36 1 3.7176 -2.4693 -0.0001 37 1 5.2215 0.1448 3.1405 38 1 6.0611 -1.0414 2.1129 39 1 7.4477 -0.7031 4.3993 40 1 6.6380 -4.3272 5.0597 41 1 8.3476 -3.9584 4.7291 42 1 8.9158 -4.4752 7.0864 43 1 7.2063 -4.8441 7.4177 44 1 9.0340 -7.6633 8.9258 45 1 1.6767 -1.7489 1.2492 46 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:19 Heat of formation + Delta-G solvation = -215.094906 kcal Electronic energy + Delta-G solvation = -26756.158502 eV Core-core repulsion = 22770.840232 eV Total energy + Delta-G solvation = -3985.318270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33041 -40.12453 -38.31700 -37.62974 -37.24255 -35.97391 -35.65336 -33.20767 -33.18504 -31.27640 -28.85727 -27.64738 -27.27644 -23.75047 -23.34176 -22.99404 -22.12491 -20.79939 -20.71828 -19.41223 -18.90556 -18.42351 -17.54447 -17.41223 -16.87829 -16.72227 -16.54295 -16.39272 -15.86654 -15.51477 -15.25574 -15.19890 -14.93733 -14.50574 -14.08022 -13.94526 -13.82994 -13.74012 -13.45693 -13.38343 -13.27540 -13.26874 -12.95749 -12.85874 -12.72553 -12.42251 -12.32997 -12.26278 -12.04703 -11.95682 -11.81989 -11.76477 -11.48781 -11.32931 -11.25493 -11.20715 -11.06344 -10.66480 -10.40929 -8.28464 -6.42482 -1.02877 0.96150 1.31776 1.38927 1.41584 1.52818 2.35379 2.45509 2.59705 3.04706 3.08989 3.31064 3.75917 3.80046 3.83551 4.00656 4.03242 4.04901 4.16549 4.18136 4.25340 4.27591 4.33105 4.55237 4.55578 4.67601 4.68177 4.79394 4.85940 5.00360 5.07968 5.13005 5.17039 5.21241 5.22738 5.32175 5.33128 5.41368 5.42620 5.58872 5.63798 5.65766 6.02724 6.17793 6.47191 6.69915 7.27294 8.83922 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.002443 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.941977 B =11456.423794 C =12564.449732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.144 4.144 7 C 0.086 3.914 8 H 0.090 0.910 9 O -0.394 6.394 10 C 0.045 3.955 11 C 0.528 3.472 12 O -0.522 6.522 13 N -1.032 6.032 14 S 2.604 3.396 15 O -0.967 6.967 16 O -0.980 6.980 17 C -0.580 4.580 18 C 0.022 3.978 19 C -0.541 4.541 20 H 0.073 0.927 21 C -0.004 4.004 22 N -0.932 5.932 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.114 4.114 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.453 0.547 40 H 0.130 0.870 41 H 0.153 0.847 42 H 0.018 0.982 43 H 0.004 0.996 44 H 0.268 0.732 45 H 0.052 0.948 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 19.620 -24.038 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.182 4.182 7 C 0.029 3.971 8 H 0.108 0.892 9 O -0.313 6.313 10 C -0.036 4.036 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.801 5.801 14 S 2.702 3.298 15 O -0.957 6.957 16 O -0.970 6.970 17 C -0.713 4.713 18 C -0.017 4.017 19 C -0.580 4.580 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.186 1.186 27 C -0.152 4.152 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.294 0.706 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.036 0.964 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.310 19.185 -22.630 31.408 hybrid contribution 0.515 -1.110 -0.159 1.234 sum -9.794 18.076 -22.788 30.691 Atomic orbital electron populations 1.21827 0.94750 1.01753 1.02235 1.21074 0.95865 0.99807 0.93398 0.89785 1.21658 0.95701 1.00496 0.97713 1.21478 0.95426 1.01315 0.96783 1.22078 1.01431 0.99922 0.94737 1.22405 0.94722 0.96350 0.83574 0.89175 1.88043 1.35437 1.61902 1.45934 1.22591 0.89197 0.98690 0.93084 1.21248 0.78798 0.82980 0.85396 1.90936 1.51174 1.32058 1.65230 1.54771 1.29361 1.49330 1.46669 1.05273 0.73074 0.77556 0.73886 1.93568 1.45298 1.76456 1.80362 1.93551 1.52276 1.86632 1.64526 1.30244 1.11898 1.18418 1.10708 1.18830 0.95948 0.95514 0.91379 1.21469 1.47084 0.93457 0.95965 0.90911 1.26126 0.94666 1.04467 0.94969 1.70091 1.47351 1.35491 1.04222 0.85285 0.79095 0.77557 0.78156 1.19069 1.20714 1.18597 1.21691 0.93488 1.01153 0.98877 0.93323 0.92657 0.91469 0.90608 0.92864 0.90366 0.91083 0.90623 0.92942 0.85461 0.85176 0.70574 0.85161 0.82856 0.96411 0.97812 0.92278 0.92904 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.08 -0.85 2.72 -10.80 -0.03 -0.88 16 3 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 4 C -0.12 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.11 -0.96 5.92 30.59 0.18 -0.78 16 6 C -0.14 -1.78 5.54 30.59 0.17 -1.61 16 7 C 0.09 1.20 2.61 30.61 0.08 1.28 16 8 H 0.09 0.75 7.78 -2.39 -0.02 0.73 16 9 O -0.39 -8.40 9.52 -129.94 -1.24 -9.64 16 10 C 0.05 0.66 6.23 71.24 0.44 1.10 16 11 C 0.53 13.41 7.64 87.66 0.67 14.08 16 12 O -0.52 -19.59 14.60 24.24 0.35 -19.24 16 13 N -1.03 -23.15 5.60 -173.53 -0.97 -24.12 16 14 S 2.60 93.87 5.11 -56.49 -0.29 93.59 16 15 O -0.97 -37.05 18.08 -127.65 -2.31 -39.35 16 16 O -0.98 -44.43 17.04 -120.72 -2.06 -46.48 16 17 C -0.58 -23.38 5.82 71.98 0.42 -22.96 16 18 C 0.02 1.21 4.98 29.85 0.15 1.36 16 19 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 20 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 23 Si 0.98 44.38 29.54 68.60 2.03 46.41 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 27 C -0.11 -1.73 4.86 30.61 0.15 -1.58 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.76 7.87 -2.38 -0.02 0.74 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 0.90 8.08 -2.39 -0.02 0.88 16 38 H 0.13 0.86 7.87 -2.39 -0.02 0.84 16 39 H 0.45 5.15 8.79 -96.75 -0.85 4.30 16 40 H 0.13 5.31 7.19 -2.39 -0.02 5.29 16 41 H 0.15 5.05 8.14 -2.39 -0.02 5.03 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -86.69 387.02 -0.34 -87.03 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.11 Total: 11.47 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 3.75 Total: -42.32 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -0.69 Total: -81.45 kcal Atomic # 8 Polarization: -109.47 SS G_CDS: -5.25 Total: -114.72 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 93.87 SS G_CDS: -0.29 Total: 93.59 kcal Total: -86.69 -0.34 -87.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.068 kcal (2) G-P(sol) polarization free energy of solvation -86.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds