Wall clock time and date at job start Tue Mar 31 2020 17:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 9 9 O 1.42895 * 109.46813 * 179.97438 * 7 6 5 10 10 C 1.42905 * 114.00207 * 270.00044 * 9 7 6 11 11 C 1.50704 * 109.47179 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99640 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99790 * 179.97438 * 11 10 9 14 14 S 1.65605 * 119.99950 * 179.97438 * 13 11 10 15 15 O 1.42093 * 104.27983 * 181.07376 * 14 13 11 16 16 O 1.42101 * 104.27829 * 308.93512 * 14 13 11 17 17 C 1.81400 * 104.44829 * 65.00179 * 14 13 11 18 18 C 1.52998 * 109.47500 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47344 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00060 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00331 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47231 * 89.99594 * 23 21 19 25 25 H 1.48503 * 109.47318 * 210.00184 * 23 21 19 26 26 H 1.48503 * 109.46784 * 330.00041 * 23 21 19 27 27 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 37 37 H 1.08998 * 109.47115 * 299.99901 * 10 9 7 38 38 H 1.09000 * 109.46820 * 60.00319 * 10 9 7 39 39 H 0.96991 * 120.00531 * 0.02562 * 13 11 10 40 40 H 1.09005 * 109.47476 * 300.00651 * 17 14 13 41 41 H 1.09001 * 109.47233 * 59.99766 * 17 14 13 42 42 H 1.08996 * 109.46867 * 300.00208 * 18 17 14 43 43 H 1.09001 * 109.47179 * 59.99598 * 18 17 14 44 44 H 0.96997 * 120.00398 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.46832 * 300.00199 * 27 7 6 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9332 0.3054 -1.2498 9 8 4.0458 -1.3957 -2.4164 10 6 5.3054 -0.9159 -2.8911 11 6 5.7087 -1.6924 -4.1181 12 8 4.9881 -2.5698 -4.5444 13 7 6.8696 -1.4110 -4.7422 14 16 7.3131 -2.2646 -6.0902 15 8 8.5756 -1.7208 -6.4498 16 8 7.1855 -3.6254 -5.7010 17 6 6.0595 -1.8369 -7.3296 18 6 6.3624 -2.5725 -8.6364 19 6 5.3213 -2.2167 -9.6662 20 1 4.5231 -1.5343 -9.4137 21 6 5.3871 -2.7630 -10.9304 22 7 4.4783 -2.4528 -11.8290 23 14 6.7672 -3.9437 -11.3670 24 1 6.3458 -5.3337 -11.0581 25 1 7.0763 -3.8302 -12.8151 26 1 7.9769 -3.6057 -10.5747 27 6 2.0395 -0.7215 -1.2494 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 -0.2074 2.1392 32 1 1.6768 -1.7489 1.2491 33 1 3.9338 0.3057 1.2487 34 1 3.9334 -1.2361 2.1386 35 1 5.1695 -1.4434 -0.0009 36 1 3.7158 -2.4709 -0.0002 37 1 5.2203 0.1413 -3.1423 38 1 6.0594 -1.0454 -2.1146 39 1 7.4457 -0.7091 -4.4015 40 1 5.0746 -2.1315 -6.9670 41 1 6.0748 -0.7613 -7.5057 42 1 7.3472 -2.2782 -8.9992 43 1 6.3467 -3.6481 -8.4600 44 1 4.5248 -2.8368 -12.7185 45 1 1.6758 -1.7491 -1.2492 46 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:23 Heat of formation + Delta-G solvation = -182.864228 kcal Electronic energy + Delta-G solvation = -26791.947529 eV Core-core repulsion = 22808.026885 eV Total energy + Delta-G solvation = -3983.920643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.35469 -39.45972 -37.05865 -36.79353 -35.77196 -34.55922 -33.94911 -32.72469 -31.49296 -30.70714 -28.10798 -26.79055 -25.99562 -22.83708 -22.16077 -21.58320 -21.29269 -20.22838 -19.49439 -18.13847 -17.77197 -17.10569 -16.58332 -16.44269 -15.79797 -15.62930 -15.31794 -15.11525 -14.79444 -14.54349 -14.36917 -14.20322 -13.69708 -13.56333 -13.24506 -12.84789 -12.82331 -12.78042 -12.50441 -12.21737 -11.94953 -11.90116 -11.87781 -11.76445 -11.44552 -11.34626 -11.28468 -11.23666 -10.94461 -10.93365 -10.79955 -10.74175 -10.43171 -10.28671 -10.07686 -9.82788 -9.63635 -9.34810 -8.64572 -6.14679 -4.16064 0.33971 1.98224 2.40719 3.24836 3.28693 3.35422 3.38835 3.88444 4.08953 4.26021 4.31437 4.37348 4.49226 4.51696 4.63866 4.65675 4.75629 4.77501 4.82828 4.84451 5.02975 5.05585 5.14966 5.16606 5.26262 5.33489 5.46222 5.46747 5.54046 5.56892 5.62774 5.63896 5.76185 5.82546 5.87527 5.94484 6.06430 6.26141 6.45232 6.79537 6.80644 6.93454 7.41093 7.55107 8.38058 8.86477 9.44374 10.97678 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002430 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.920171 B =11519.442497 C =12639.260525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.144 4.144 7 C 0.089 3.911 8 H 0.063 0.937 9 O -0.355 6.355 10 C 0.043 3.957 11 C 0.531 3.469 12 O -0.464 6.464 13 N -1.057 6.057 14 S 2.565 3.435 15 O -0.953 6.953 16 O -0.936 6.936 17 C -0.569 4.569 18 C -0.005 4.005 19 C -0.518 4.518 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.870 3.130 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.113 4.113 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.429 0.571 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.267 0.733 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 9.080 28.311 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.182 4.182 7 C 0.031 3.969 8 H 0.081 0.919 9 O -0.274 6.274 10 C -0.039 4.039 11 C 0.316 3.684 12 O -0.332 6.332 13 N -0.820 5.820 14 S 2.665 3.335 15 O -0.943 6.943 16 O -0.927 6.927 17 C -0.703 4.703 18 C -0.045 4.045 19 C -0.557 4.557 20 H 0.097 0.903 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.696 3.304 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.187 1.187 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.264 0.736 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.436 7.650 27.741 28.812 hybrid contribution 0.653 0.376 -0.182 0.775 sum -0.783 8.025 27.559 28.714 Atomic orbital electron populations 1.21819 0.94709 1.02155 1.01819 1.21095 0.95902 0.99443 0.94267 0.91121 1.21653 0.95317 1.01083 0.97496 1.21490 0.95833 1.00616 0.97478 1.22083 1.00751 1.01024 0.94346 1.22219 0.95122 0.95143 0.84366 0.91873 1.88080 1.34179 1.60539 1.44560 1.22336 0.88867 0.98032 0.94615 1.20237 0.79825 0.83248 0.85095 1.90951 1.49803 1.28390 1.64082 1.55352 1.29610 1.51250 1.45795 1.06701 0.76842 0.74738 0.75194 1.93599 1.38689 1.79601 1.82441 1.93610 1.86843 1.32135 1.80063 1.30180 1.16129 1.11210 1.12782 1.19434 0.99357 0.95441 0.90263 1.20812 1.10977 1.29213 0.94730 0.90318 1.24976 0.95878 0.96093 0.96148 1.69876 1.34456 1.44054 1.04880 0.86917 0.83237 0.82098 0.78137 1.19601 1.20744 1.18655 1.21663 0.92863 1.02322 0.98180 0.92599 0.92452 0.92418 0.91827 0.91629 0.91936 0.91570 0.91786 0.90694 0.89179 0.89481 0.73603 0.84439 0.85376 0.94842 0.95089 0.92358 0.90665 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.53 2.72 -90.62 -0.25 -0.78 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.65 5.20 -26.74 -0.14 -0.79 16 5 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 6 C -0.14 -1.01 5.54 -26.73 -0.15 -1.16 16 7 C 0.09 0.71 2.61 -26.73 -0.07 0.64 16 8 H 0.06 0.39 7.78 -51.93 -0.40 -0.02 16 9 O -0.36 -4.03 9.52 -55.14 -0.53 -4.55 16 10 C 0.04 0.38 6.23 36.01 0.22 0.60 16 11 C 0.53 6.96 7.64 -10.99 -0.08 6.88 16 12 O -0.46 -8.42 14.60 -22.95 -0.34 -8.75 16 13 N -1.06 -12.30 5.60 31.22 0.17 -12.13 16 14 S 2.57 43.81 5.11 -107.50 -0.55 43.26 16 15 O -0.95 -17.44 18.08 -57.54 -1.04 -18.48 16 16 O -0.94 -19.52 17.04 -64.78 -1.10 -20.63 16 17 C -0.57 -10.86 5.82 37.16 0.22 -10.65 16 18 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 19 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 20 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 23 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 27 C -0.11 -0.89 4.85 -26.73 -0.13 -1.02 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 39 H 0.43 2.94 8.79 -34.47 -0.30 2.64 16 40 H 0.14 2.66 7.19 -51.92 -0.37 2.29 16 41 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 43 H 0.03 0.75 7.57 -51.93 -0.39 0.36 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -37.89 383.40 -9.98 -47.87 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.74 Total: -1.97 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.74 Total: -20.89 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.95 Total: -38.70 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -3.00 Total: -52.41 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 43.81 SS G_CDS: -0.55 Total: 43.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.89 -9.98 -47.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.993 kcal (2) G-P(sol) polarization free energy of solvation -37.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds