Wall clock time and date at job start Tue Mar 31 2020 17:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 9 9 O 1.42895 * 109.46813 * 179.97438 * 7 6 5 10 10 C 1.42905 * 114.00207 * 270.00044 * 9 7 6 11 11 C 1.50704 * 109.47179 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99640 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99790 * 179.97438 * 11 10 9 14 14 S 1.65605 * 119.99950 * 179.97438 * 13 11 10 15 15 O 1.42093 * 104.27983 * 181.07376 * 14 13 11 16 16 O 1.42101 * 104.27829 * 308.93512 * 14 13 11 17 17 C 1.81400 * 104.44829 * 65.00179 * 14 13 11 18 18 C 1.52998 * 109.47500 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47344 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00012 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00060 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00331 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47231 * 89.99594 * 23 21 19 25 25 H 1.48503 * 109.47318 * 210.00184 * 23 21 19 26 26 H 1.48503 * 109.46784 * 330.00041 * 23 21 19 27 27 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 37 37 H 1.08998 * 109.47115 * 299.99901 * 10 9 7 38 38 H 1.09000 * 109.46820 * 60.00319 * 10 9 7 39 39 H 0.96991 * 120.00531 * 0.02562 * 13 11 10 40 40 H 1.09005 * 109.47476 * 300.00651 * 17 14 13 41 41 H 1.09001 * 109.47233 * 59.99766 * 17 14 13 42 42 H 1.08996 * 109.46867 * 300.00208 * 18 17 14 43 43 H 1.09001 * 109.47179 * 59.99598 * 18 17 14 44 44 H 0.96997 * 120.00398 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.46832 * 300.00199 * 27 7 6 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9332 0.3054 -1.2498 9 8 4.0458 -1.3957 -2.4164 10 6 5.3054 -0.9159 -2.8911 11 6 5.7087 -1.6924 -4.1181 12 8 4.9881 -2.5698 -4.5444 13 7 6.8696 -1.4110 -4.7422 14 16 7.3131 -2.2646 -6.0902 15 8 8.5756 -1.7208 -6.4498 16 8 7.1855 -3.6254 -5.7010 17 6 6.0595 -1.8369 -7.3296 18 6 6.3624 -2.5725 -8.6364 19 6 5.3213 -2.2167 -9.6662 20 1 4.5231 -1.5343 -9.4137 21 6 5.3871 -2.7630 -10.9304 22 7 4.4783 -2.4528 -11.8290 23 14 6.7672 -3.9437 -11.3670 24 1 6.3458 -5.3337 -11.0581 25 1 7.0763 -3.8302 -12.8151 26 1 7.9769 -3.6057 -10.5747 27 6 2.0395 -0.7215 -1.2494 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 -0.2074 2.1392 32 1 1.6768 -1.7489 1.2491 33 1 3.9338 0.3057 1.2487 34 1 3.9334 -1.2361 2.1386 35 1 5.1695 -1.4434 -0.0009 36 1 3.7158 -2.4709 -0.0002 37 1 5.2203 0.1413 -3.1423 38 1 6.0594 -1.0454 -2.1146 39 1 7.4457 -0.7091 -4.4015 40 1 5.0746 -2.1315 -6.9670 41 1 6.0748 -0.7613 -7.5057 42 1 7.3472 -2.2782 -8.9992 43 1 6.3467 -3.6481 -8.4600 44 1 4.5248 -2.8368 -12.7185 45 1 1.6758 -1.7491 -1.2492 46 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:22 Heat of formation + Delta-G solvation = -210.954000 kcal Electronic energy + Delta-G solvation = -26793.165593 eV Core-core repulsion = 22808.026885 eV Total energy + Delta-G solvation = -3985.138707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34202 -40.13282 -38.34138 -37.63516 -37.27371 -35.97942 -35.66304 -33.52933 -33.20699 -31.28471 -28.87574 -27.94552 -27.28188 -23.45022 -23.31062 -22.94034 -22.13144 -20.80771 -20.73003 -19.58204 -19.05889 -18.59618 -17.57312 -17.40522 -16.88574 -16.75269 -16.49957 -16.32431 -15.87600 -15.52221 -15.32232 -15.24279 -14.95497 -14.84700 -14.09450 -13.95740 -13.84033 -13.79433 -13.45963 -13.41369 -13.28870 -13.27957 -13.12709 -13.04732 -12.73123 -12.42341 -12.33857 -12.14621 -11.97432 -11.94408 -11.82496 -11.72602 -11.49508 -11.33221 -11.27175 -11.25267 -11.13827 -10.86350 -10.41552 -8.38125 -6.44676 -1.06112 0.94889 1.26615 1.32092 1.32856 1.43231 2.28451 2.41536 2.55819 2.95422 3.06594 3.29846 3.74326 3.76763 3.81352 3.94123 3.98578 4.04010 4.15876 4.17337 4.25192 4.27587 4.32243 4.50359 4.54655 4.55078 4.67214 4.79131 4.85555 5.00005 5.00235 5.04629 5.07791 5.12476 5.16312 5.31608 5.32252 5.40880 5.42512 5.43964 5.58281 5.62786 6.14105 6.17113 6.46072 6.60793 7.19332 8.77616 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002430 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.920171 B =11519.442497 C =12639.260525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.143 4.143 7 C 0.086 3.914 8 H 0.091 0.909 9 O -0.394 6.394 10 C 0.044 3.956 11 C 0.528 3.472 12 O -0.521 6.521 13 N -1.032 6.032 14 S 2.607 3.393 15 O -0.960 6.960 16 O -0.974 6.974 17 C -0.581 4.581 18 C -0.015 4.015 19 C -0.530 4.530 20 H 0.046 0.954 21 C 0.012 3.988 22 N -0.940 5.940 23 Si 0.928 3.072 24 H -0.265 1.265 25 H -0.271 1.271 26 H -0.244 1.244 27 C -0.115 4.115 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.454 0.546 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.271 0.729 45 H 0.052 0.948 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 10.580 30.703 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.181 4.181 7 C 0.030 3.970 8 H 0.109 0.891 9 O -0.314 6.314 10 C -0.037 4.037 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.802 5.802 14 S 2.704 3.296 15 O -0.951 6.951 16 O -0.964 6.964 17 C -0.713 4.713 18 C -0.054 4.054 19 C -0.569 4.569 20 H 0.064 0.936 21 C -0.187 4.187 22 N -0.579 5.579 23 Si 0.750 3.250 24 H -0.190 1.190 25 H -0.196 1.196 26 H -0.167 1.167 27 C -0.153 4.153 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.295 0.705 40 H 0.147 0.853 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.662 9.192 30.137 31.514 hybrid contribution -0.082 -0.007 -0.836 0.840 sum 0.580 9.185 29.300 30.712 Atomic orbital electron populations 1.21831 0.94815 1.01749 1.02213 1.21074 0.95824 0.99822 0.93436 0.89793 1.21656 0.95719 1.00492 0.97673 1.21480 0.95400 1.01318 0.96773 1.22076 1.01359 0.99920 0.94757 1.22393 0.94687 0.96373 0.83597 0.89131 1.88044 1.35427 1.61952 1.45936 1.22605 0.89041 0.98893 0.93150 1.21223 0.78891 0.82495 0.85801 1.90940 1.51488 1.31141 1.65761 1.54749 1.29966 1.51525 1.43918 1.05209 0.75426 0.73873 0.75086 1.93585 1.38668 1.79657 1.83156 1.93568 1.87072 1.34980 1.80769 1.30191 1.17133 1.12208 1.11812 1.19380 0.98387 0.95948 0.91713 1.21132 1.11235 1.28366 0.96128 0.93558 1.25913 0.98561 0.98021 0.96159 1.70009 1.36622 1.45746 1.05545 0.85979 0.80608 0.79746 0.78632 1.18964 1.19560 1.16703 1.21687 0.93554 1.01135 0.98887 0.91436 0.93308 0.92767 0.90584 0.92841 0.90375 0.91001 0.90685 0.92936 0.84970 0.85669 0.70493 0.85326 0.83041 0.93799 0.95382 0.92034 0.92915 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.08 -0.88 2.72 -10.79 -0.03 -0.91 16 3 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.12 -1.11 5.20 30.59 0.16 -0.95 16 5 C -0.11 -0.93 5.92 30.60 0.18 -0.75 16 6 C -0.14 -1.74 5.54 30.60 0.17 -1.57 16 7 C 0.09 1.21 2.61 30.60 0.08 1.28 16 8 H 0.09 0.75 7.78 -2.39 -0.02 0.74 16 9 O -0.39 -8.36 9.52 -129.94 -1.24 -9.59 16 10 C 0.04 0.62 6.23 71.24 0.44 1.06 16 11 C 0.53 12.85 7.64 87.66 0.67 13.52 16 12 O -0.52 -19.00 14.60 24.23 0.35 -18.65 16 13 N -1.03 -21.29 5.60 -173.54 -0.97 -22.26 16 14 S 2.61 85.08 5.11 -56.49 -0.29 84.79 16 15 O -0.96 -32.76 18.08 -127.65 -2.31 -35.07 16 16 O -0.97 -40.02 17.04 -120.72 -2.06 -42.08 16 17 C -0.58 -22.09 5.82 71.98 0.42 -21.67 16 18 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 19 C -0.53 -30.89 9.66 25.60 0.25 -30.65 16 20 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 21 C 0.01 0.71 5.47 84.65 0.46 1.18 16 22 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 23 Si 0.93 44.55 27.47 68.60 1.88 46.44 16 24 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.24 -10.88 6.54 99.48 0.65 -10.23 16 27 C -0.11 -1.77 4.85 30.60 0.15 -1.63 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.13 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.13 0.85 7.87 -2.39 -0.02 0.83 16 39 H 0.45 4.39 8.79 -96.76 -0.85 3.54 16 40 H 0.13 5.12 7.19 -2.39 -0.02 5.11 16 41 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 42 H 0.04 2.01 7.20 -2.39 -0.02 2.00 16 43 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -85.69 383.40 -0.53 -86.23 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.06 Total: 11.45 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 3.73 Total: -42.63 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -0.67 Total: -80.88 kcal Atomic # 8 Polarization: -100.14 SS G_CDS: -5.25 Total: -105.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 16 Polarization: 85.08 SS G_CDS: -0.29 Total: 84.79 kcal Total: -85.69 -0.53 -86.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.729 kcal (2) G-P(sol) polarization free energy of solvation -85.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds