Wall clock time and date at job start Tue Mar 31 2020 17:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47330 * 119.99947 * 2 1 3 5 5 C 1.52994 * 109.47330 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47249 * 299.99960 * 5 4 2 7 7 C 1.52997 * 109.46922 * 59.99790 * 6 5 4 8 8 H 1.09005 * 109.47032 * 180.02562 * 7 6 5 9 9 O 1.42901 * 109.47338 * 60.00434 * 7 6 5 10 10 C 1.42904 * 114.00183 * 89.99780 * 9 7 6 11 11 C 1.50698 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99613 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99913 * 180.02562 * 11 10 9 14 14 S 1.65600 * 119.99844 * 179.97438 * 13 11 10 15 15 O 1.42098 * 104.27576 * 308.92411 * 14 13 11 16 16 O 1.42102 * 104.27841 * 181.06538 * 14 13 11 17 17 C 1.81404 * 104.45074 * 64.99364 * 14 13 11 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00489 * 23 21 19 25 25 H 1.48505 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00464 * 23 21 19 27 27 C 1.52994 * 109.47330 * 300.00160 * 7 6 5 28 28 H 1.09005 * 109.47051 * 300.00079 * 1 2 3 29 29 H 1.09001 * 109.47682 * 60.00265 * 1 2 3 30 30 H 1.09006 * 109.47471 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47236 * 59.99682 * 4 2 1 32 32 H 1.09005 * 109.47032 * 299.99985 * 4 2 1 33 33 H 1.09001 * 109.47682 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.47471 * 59.99692 * 5 4 2 35 35 H 1.09003 * 109.47160 * 299.99657 * 6 5 4 36 36 H 1.08999 * 109.47200 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47025 * 59.99692 * 10 9 7 38 38 H 1.09000 * 109.46574 * 300.00274 * 10 9 7 39 39 H 0.96993 * 119.99975 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47124 * 60.00022 * 17 14 13 41 41 H 1.09001 * 109.46975 * 300.00144 * 17 14 13 42 42 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 43 43 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 44 44 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.47229 * 180.02562 * 27 7 6 46 46 H 1.09000 * 109.47224 * 299.99947 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2489 6 6 4.0794 -1.4434 -0.0003 7 6 3.5694 -0.7222 -1.2495 8 1 3.9320 -1.2366 -2.1396 9 8 4.0462 0.6249 -1.2499 10 6 5.3058 0.7955 -1.9030 11 6 5.7102 2.2460 -1.8434 12 8 4.9904 3.0542 -1.2959 13 7 6.8713 2.6452 -2.3993 14 16 7.3154 4.2392 -2.3343 15 8 6.1771 4.9400 -2.8164 16 8 8.5537 4.2866 -3.0296 17 6 7.5643 4.5681 -0.5678 18 6 7.9821 6.0272 -0.3746 19 6 8.1895 6.3003 1.0929 20 1 8.0388 5.5119 1.8154 21 6 8.5727 7.5564 1.5129 22 7 8.7567 8.5163 0.6331 23 14 8.8291 7.8951 3.3320 24 1 9.8927 7.0013 3.8568 25 1 9.2347 9.3113 3.5195 26 1 7.5632 7.6419 4.0658 27 6 2.0394 -0.7216 -1.2492 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6766 -1.7488 1.2493 32 1 1.6766 -0.2073 2.1392 33 1 3.9333 -1.2352 2.1391 34 1 3.9337 0.3058 1.2486 35 1 3.7158 -2.4710 -0.0001 36 1 5.1694 -1.4434 -0.0008 37 1 5.2203 0.4842 -2.9441 38 1 6.0596 0.1876 -1.4027 39 1 7.4467 1.9989 -2.8374 40 1 8.3450 3.9122 -0.1825 41 1 6.6350 4.3823 -0.0291 42 1 8.9113 6.2135 -0.9133 43 1 7.2012 6.6828 -0.7598 44 1 9.0266 9.3999 0.9285 45 1 1.6761 -0.2082 -2.1395 46 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:27 Heat of formation + Delta-G solvation = -185.490042 kcal Electronic energy + Delta-G solvation = -27279.441687 eV Core-core repulsion = 23295.407180 eV Total energy + Delta-G solvation = -3984.034507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33711 -39.42139 -36.77061 -36.51519 -35.62946 -34.47687 -33.88632 -32.52733 -31.17845 -30.68765 -28.16056 -26.65496 -25.61256 -22.81783 -22.08018 -21.58798 -21.52466 -19.91012 -19.36760 -18.08567 -17.54692 -16.66776 -16.63900 -16.16327 -15.81542 -15.49582 -15.31398 -15.00538 -14.68150 -14.54892 -14.32486 -14.02799 -13.50455 -13.38540 -13.03835 -12.66975 -12.55410 -12.51985 -12.37084 -12.11503 -12.09186 -11.80478 -11.73305 -11.67205 -11.62544 -11.13581 -11.05969 -10.99919 -10.87586 -10.77928 -10.53109 -10.40903 -10.36830 -10.26964 -10.15098 -9.78071 -9.69892 -9.18400 -8.48311 -6.10796 -4.16328 0.46988 2.04611 2.52525 3.29615 3.34046 3.35886 3.37634 4.01550 4.18011 4.38713 4.38817 4.44185 4.54123 4.61628 4.70578 4.79133 4.86136 4.90795 4.92421 4.99833 5.16975 5.23151 5.24449 5.31671 5.43632 5.48723 5.56706 5.59587 5.63095 5.69956 5.72814 5.78397 5.98299 6.04671 6.07829 6.11476 6.35853 6.45446 6.54559 6.83622 7.29154 7.36091 7.47603 7.82060 8.17941 8.86371 9.48145 11.00312 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.002963 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.177652 B = 9446.356164 C =10872.501744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.063 0.937 9 O -0.349 6.349 10 C 0.042 3.958 11 C 0.531 3.469 12 O -0.465 6.465 13 N -1.058 6.058 14 S 2.566 3.434 15 O -0.937 6.937 16 O -0.954 6.954 17 C -0.575 4.575 18 C 0.030 3.970 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.108 4.108 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.428 0.572 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.266 0.734 45 H 0.069 0.931 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 -25.121 -4.152 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.179 4.179 7 C 0.029 3.971 8 H 0.081 0.919 9 O -0.268 6.268 10 C -0.040 4.040 11 C 0.316 3.684 12 O -0.333 6.333 13 N -0.821 5.821 14 S 2.666 3.334 15 O -0.927 6.927 16 O -0.944 6.944 17 C -0.710 4.710 18 C -0.009 4.009 19 C -0.560 4.560 20 H 0.080 0.920 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.729 3.271 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.146 4.146 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.263 0.737 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.859 -23.652 -4.474 26.408 hybrid contribution 0.743 -0.641 1.141 1.505 sum -10.116 -24.293 -3.334 26.525 Atomic orbital electron populations 1.21835 0.95477 1.01301 1.01842 1.21090 0.95010 1.01038 0.94013 0.89694 1.21570 0.95505 1.00057 0.97803 1.21450 0.95690 1.01817 0.96643 1.22036 1.00696 0.99375 0.95757 1.22214 0.95149 0.82601 0.97123 0.91927 1.88095 1.34009 1.27209 1.77446 1.22342 0.89059 0.93390 0.99224 1.20220 0.79806 0.91449 0.76948 1.90947 1.49494 1.54169 1.38709 1.55431 1.29036 1.32921 1.64720 1.06726 0.74259 0.72192 0.80186 1.93602 1.50579 1.69416 1.79084 1.93592 1.44625 1.83960 1.72234 1.30338 1.11020 1.11116 1.18480 1.18987 0.97727 0.84160 1.00055 1.20945 1.47541 0.96507 0.90962 0.91998 1.25059 0.95084 0.96040 0.98243 1.69941 1.46256 1.02754 1.33922 0.86505 0.78727 0.77331 0.84570 1.20077 1.21063 1.20001 1.21678 0.92712 1.01021 0.99140 0.92672 0.92693 0.93095 0.92488 0.91988 0.92268 0.90723 0.91074 0.91841 0.89491 0.89431 0.73747 0.86026 0.85012 0.94756 0.94547 0.92446 0.91183 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.15 0.34 -0.80 16 2 C -0.09 -0.83 2.57 -90.63 -0.23 -1.06 16 3 H 0.08 0.99 7.68 -51.93 -0.40 0.60 16 4 C -0.11 -0.91 5.20 -26.74 -0.14 -1.05 16 5 C -0.12 -1.02 5.78 -26.73 -0.15 -1.17 16 6 C -0.14 -0.99 5.63 -26.73 -0.15 -1.14 16 7 C 0.09 0.67 2.91 -26.74 -0.08 0.59 16 8 H 0.06 0.35 7.79 -51.93 -0.40 -0.05 16 9 O -0.35 -3.80 8.17 -55.14 -0.45 -4.25 16 10 C 0.04 0.36 6.23 36.00 0.22 0.59 16 11 C 0.53 7.09 7.64 -10.99 -0.08 7.00 16 12 O -0.46 -8.51 14.60 -22.97 -0.34 -8.84 16 13 N -1.06 -12.95 5.60 31.22 0.17 -12.77 16 14 S 2.57 46.45 5.11 -107.50 -0.55 45.90 16 15 O -0.94 -20.69 17.04 -64.79 -1.10 -21.80 16 16 O -0.95 -18.64 18.08 -57.54 -1.04 -19.68 16 17 C -0.57 -11.47 5.82 37.16 0.22 -11.25 16 18 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.11 -0.82 4.94 -26.73 -0.13 -0.96 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 39 H 0.43 3.20 8.79 -34.47 -0.30 2.90 16 40 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 41 H 0.13 2.62 7.19 -51.92 -0.37 2.24 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -37.66 384.94 -10.26 -47.92 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.73 Total: -0.75 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.74 Total: -21.99 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.91 Total: -38.79 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -2.93 Total: -54.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 46.45 SS G_CDS: -0.55 Total: 45.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.66 -10.26 -47.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.572 kcal (2) G-P(sol) polarization free energy of solvation -37.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds