Wall clock time and date at job start Tue Mar 31 2020 17:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47330 * 119.99947 * 2 1 3 5 5 C 1.52994 * 109.47330 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47249 * 299.99960 * 5 4 2 7 7 C 1.52997 * 109.46922 * 59.99790 * 6 5 4 8 8 H 1.09005 * 109.47032 * 180.02562 * 7 6 5 9 9 O 1.42901 * 109.47338 * 60.00434 * 7 6 5 10 10 C 1.42904 * 114.00183 * 89.99780 * 9 7 6 11 11 C 1.50698 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99613 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99913 * 180.02562 * 11 10 9 14 14 S 1.65600 * 119.99844 * 179.97438 * 13 11 10 15 15 O 1.42098 * 104.27576 * 308.92411 * 14 13 11 16 16 O 1.42102 * 104.27841 * 181.06538 * 14 13 11 17 17 C 1.81404 * 104.45074 * 64.99364 * 14 13 11 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00489 * 23 21 19 25 25 H 1.48505 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00464 * 23 21 19 27 27 C 1.52994 * 109.47330 * 300.00160 * 7 6 5 28 28 H 1.09005 * 109.47051 * 300.00079 * 1 2 3 29 29 H 1.09001 * 109.47682 * 60.00265 * 1 2 3 30 30 H 1.09006 * 109.47471 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47236 * 59.99682 * 4 2 1 32 32 H 1.09005 * 109.47032 * 299.99985 * 4 2 1 33 33 H 1.09001 * 109.47682 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.47471 * 59.99692 * 5 4 2 35 35 H 1.09003 * 109.47160 * 299.99657 * 6 5 4 36 36 H 1.08999 * 109.47200 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47025 * 59.99692 * 10 9 7 38 38 H 1.09000 * 109.46574 * 300.00274 * 10 9 7 39 39 H 0.96993 * 119.99975 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47124 * 60.00022 * 17 14 13 41 41 H 1.09001 * 109.46975 * 300.00144 * 17 14 13 42 42 H 1.09001 * 109.47194 * 299.99756 * 18 17 14 43 43 H 1.08992 * 109.47399 * 59.99928 * 18 17 14 44 44 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.47229 * 180.02562 * 27 7 6 46 46 H 1.09000 * 109.47224 * 299.99947 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2489 6 6 4.0794 -1.4434 -0.0003 7 6 3.5694 -0.7222 -1.2495 8 1 3.9320 -1.2366 -2.1396 9 8 4.0462 0.6249 -1.2499 10 6 5.3058 0.7955 -1.9030 11 6 5.7102 2.2460 -1.8434 12 8 4.9904 3.0542 -1.2959 13 7 6.8713 2.6452 -2.3993 14 16 7.3154 4.2392 -2.3343 15 8 6.1771 4.9400 -2.8164 16 8 8.5537 4.2866 -3.0296 17 6 7.5643 4.5681 -0.5678 18 6 7.9821 6.0272 -0.3746 19 6 8.1895 6.3003 1.0929 20 1 8.0388 5.5119 1.8154 21 6 8.5727 7.5564 1.5129 22 7 8.7567 8.5163 0.6331 23 14 8.8291 7.8951 3.3320 24 1 9.8927 7.0013 3.8568 25 1 9.2347 9.3113 3.5195 26 1 7.5632 7.6419 4.0658 27 6 2.0394 -0.7216 -1.2492 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6766 -1.7488 1.2493 32 1 1.6766 -0.2073 2.1392 33 1 3.9333 -1.2352 2.1391 34 1 3.9337 0.3058 1.2486 35 1 3.7158 -2.4710 -0.0001 36 1 5.1694 -1.4434 -0.0008 37 1 5.2203 0.4842 -2.9441 38 1 6.0596 0.1876 -1.4027 39 1 7.4467 1.9989 -2.8374 40 1 8.3450 3.9122 -0.1825 41 1 6.6350 4.3823 -0.0291 42 1 8.9113 6.2135 -0.9133 43 1 7.2012 6.6828 -0.7598 44 1 9.0266 9.3999 0.9285 45 1 1.6761 -0.2082 -2.1395 46 1 1.6757 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:26 Heat of formation + Delta-G solvation = -213.065660 kcal Electronic energy + Delta-G solvation = -27280.637456 eV Core-core repulsion = 23295.407180 eV Total energy + Delta-G solvation = -3985.230276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.32532 -40.18003 -38.31900 -37.28882 -37.22699 -35.97785 -35.64321 -33.19907 -33.13028 -31.30746 -28.94206 -27.65293 -27.24330 -23.74624 -23.42150 -22.95488 -22.14685 -20.84013 -20.43724 -19.43401 -18.90792 -18.35878 -17.55606 -17.19685 -16.88730 -16.74341 -16.54475 -16.32251 -16.09543 -15.57129 -15.21614 -15.13289 -14.74885 -14.50235 -14.12649 -13.90330 -13.77902 -13.65247 -13.39619 -13.28071 -13.22178 -13.09718 -12.94452 -12.86407 -12.73703 -12.66898 -12.34653 -12.29859 -12.24760 -12.04832 -11.78156 -11.76802 -11.45694 -11.29940 -11.14910 -11.07015 -10.83796 -10.66367 -10.36614 -8.28701 -6.43057 -1.03418 0.97974 1.32740 1.38757 1.43063 1.51114 2.35426 2.49654 2.62936 3.04490 3.10178 3.36087 3.81120 3.81984 3.87596 3.94349 4.01514 4.02750 4.22749 4.23390 4.31267 4.32868 4.43972 4.57492 4.66191 4.67138 4.74297 4.84552 4.94065 4.95459 5.02103 5.11491 5.20359 5.20424 5.21943 5.38556 5.39265 5.45044 5.47876 5.63091 5.65007 5.69085 6.02220 6.23491 6.49737 6.69204 7.26872 8.83586 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.002963 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.177652 B = 9446.356164 C =10872.501744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.044 0.956 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.138 4.138 7 C 0.082 3.918 8 H 0.094 0.906 9 O -0.386 6.386 10 C 0.044 3.956 11 C 0.527 3.473 12 O -0.521 6.521 13 N -1.033 6.033 14 S 2.603 3.397 15 O -0.980 6.980 16 O -0.967 6.967 17 C -0.579 4.579 18 C 0.023 3.977 19 C -0.544 4.544 20 H 0.073 0.927 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.975 3.025 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.267 1.267 27 C -0.108 4.108 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.453 0.547 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.017 0.983 43 H 0.003 0.997 44 H 0.269 0.731 45 H 0.062 0.938 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -28.958 -3.869 30.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.063 0.937 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.175 4.175 7 C 0.025 3.975 8 H 0.112 0.888 9 O -0.305 6.305 10 C -0.036 4.036 11 C 0.315 3.685 12 O -0.393 6.393 13 N -0.802 5.802 14 S 2.701 3.299 15 O -0.970 6.970 16 O -0.958 6.958 17 C -0.712 4.712 18 C -0.016 4.016 19 C -0.582 4.582 20 H 0.091 0.909 21 C -0.201 4.201 22 N -0.572 5.572 23 Si 0.798 3.202 24 H -0.183 1.183 25 H -0.206 1.206 26 H -0.192 1.192 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.294 0.706 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.035 0.965 43 H 0.022 0.978 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.455 -27.520 -4.200 29.737 hybrid contribution 0.581 0.482 1.004 1.256 sum -9.874 -27.038 -3.196 28.962 Atomic orbital electron populations 1.21819 0.94826 1.02270 1.01329 1.21047 0.95618 0.99170 0.95509 0.93719 1.21553 0.95437 1.00814 0.96903 1.21445 0.95851 1.00269 0.98286 1.22049 1.01307 0.99949 0.94196 1.22443 0.94887 0.81473 0.98737 0.88813 1.88082 1.34970 1.29380 1.78067 1.22572 0.89549 0.89550 1.01975 1.21300 0.78734 0.93338 0.75125 1.90938 1.51117 1.55995 1.41281 1.54774 1.29442 1.31318 1.64671 1.05292 0.73077 0.73125 0.78401 1.93550 1.52262 1.71901 1.79307 1.93567 1.45296 1.84992 1.71900 1.30242 1.11879 1.07770 1.21340 1.18819 0.95915 0.87694 0.99165 1.21455 1.47321 0.97197 0.92277 0.90873 1.26116 0.94578 0.95804 1.03581 1.70084 1.47295 1.03312 1.36483 0.85349 0.79194 0.77476 0.78151 1.18347 1.20629 1.19236 1.21719 0.93204 1.01950 0.97701 0.93349 0.93128 0.91276 0.90506 0.93158 0.91629 0.94012 0.88941 0.90854 0.85536 0.85391 0.70613 0.82885 0.85173 0.96460 0.97843 0.92242 0.91959 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.19 71.98 0.66 -1.53 16 2 C -0.09 -1.67 2.57 -10.80 -0.03 -1.70 16 3 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 4 C -0.11 -1.70 5.20 30.59 0.16 -1.54 16 5 C -0.12 -1.94 5.78 30.59 0.18 -1.76 16 6 C -0.14 -1.47 5.63 30.59 0.17 -1.29 16 7 C 0.08 1.00 2.91 30.59 0.09 1.09 16 8 H 0.09 0.58 7.79 -2.38 -0.02 0.56 16 9 O -0.39 -7.73 8.17 -129.94 -1.06 -8.79 16 10 C 0.04 0.62 6.23 71.24 0.44 1.07 16 11 C 0.53 13.30 7.64 87.66 0.67 13.97 16 12 O -0.52 -19.47 14.60 24.21 0.35 -19.11 16 13 N -1.03 -23.29 5.60 -173.53 -0.97 -24.26 16 14 S 2.60 94.55 5.11 -56.49 -0.29 94.26 16 15 O -0.98 -44.70 17.04 -120.72 -2.06 -46.76 16 16 O -0.97 -37.37 18.08 -127.65 -2.31 -39.68 16 17 C -0.58 -23.50 5.82 71.98 0.42 -23.08 16 18 C 0.02 1.25 4.98 29.85 0.15 1.40 16 19 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 20 H 0.07 3.92 7.74 -2.91 -0.02 3.89 16 21 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 22 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 23 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 C -0.11 -1.42 4.94 30.59 0.15 -1.27 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.94 7.68 -2.38 -0.02 0.92 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.65 7.87 -2.39 -0.02 0.63 16 37 H 0.13 0.83 8.08 -2.39 -0.02 0.81 16 38 H 0.13 0.80 7.87 -2.39 -0.02 0.79 16 39 H 0.45 5.23 8.79 -96.75 -0.85 4.38 16 40 H 0.15 5.08 8.14 -2.39 -0.02 5.06 16 41 H 0.13 5.33 7.19 -2.39 -0.02 5.31 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -87.24 384.94 -0.15 -87.39 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.11 Total: 13.37 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 3.76 Total: -45.35 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -0.69 Total: -81.73 kcal Atomic # 8 Polarization: -109.27 SS G_CDS: -5.07 Total: -114.34 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 94.55 SS G_CDS: -0.29 Total: 94.26 kcal Total: -87.24 -0.15 -87.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.673 kcal (2) G-P(sol) polarization free energy of solvation -87.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds