Wall clock time and date at job start Tue Mar 31 2020 17:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46824 * 2 1 4 4 C 1.52998 * 109.47257 * 240.00499 * 2 1 3 5 5 C 1.53004 * 109.47245 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47171 * 59.99719 * 5 4 2 7 7 C 1.52998 * 109.47265 * 300.00268 * 6 5 4 8 8 H 1.09004 * 109.47785 * 179.97438 * 7 6 5 9 9 O 1.42899 * 109.47141 * 299.99845 * 7 6 5 10 10 C 1.42905 * 114.00205 * 270.00117 * 9 7 6 11 11 C 1.50695 * 109.47097 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00361 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00001 * 179.97438 * 11 10 9 14 14 S 1.65599 * 120.00250 * 180.02562 * 13 11 10 15 15 O 1.42105 * 104.27655 * 308.93058 * 14 13 11 16 16 O 1.42101 * 104.27764 * 181.07495 * 14 13 11 17 17 C 1.81395 * 104.44748 * 65.00363 * 14 13 11 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47535 * 180.02562 * 18 17 14 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00073 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99777 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47051 * 90.00395 * 23 21 19 25 25 H 1.48506 * 109.47098 * 210.00230 * 23 21 19 26 26 H 1.48495 * 109.47181 * 330.00007 * 23 21 19 27 27 C 1.52993 * 109.47223 * 120.00179 * 2 1 3 28 28 H 1.09006 * 109.47397 * 299.99846 * 1 2 3 29 29 H 1.09009 * 109.47391 * 59.99763 * 1 2 3 30 30 H 1.08994 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47190 * 299.99872 * 4 2 1 32 32 H 1.08998 * 109.47151 * 60.00055 * 4 2 1 33 33 H 1.08996 * 109.46939 * 179.97438 * 5 4 2 34 34 H 1.09005 * 109.46889 * 299.99533 * 5 4 2 35 35 H 1.09001 * 109.47270 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47367 * 60.00106 * 6 5 4 37 37 H 1.08997 * 109.46847 * 59.99292 * 10 9 7 38 38 H 1.09003 * 109.46866 * 300.00038 * 10 9 7 39 39 H 0.97001 * 119.99746 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 41 41 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 42 42 H 1.09004 * 109.47080 * 299.99725 * 18 17 14 43 43 H 1.09005 * 109.47285 * 59.99790 * 18 17 14 44 44 H 0.97008 * 119.99981 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47367 * 60.00153 * 27 2 1 46 46 H 1.08996 * 109.47375 * 300.00007 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2488 8 1 3.9338 -1.2341 2.1389 9 8 4.0463 0.6271 1.2487 10 6 5.3061 0.7988 1.9011 11 6 5.7093 2.2496 1.8409 12 8 4.9888 3.0571 1.2936 13 7 6.8703 2.6499 2.3961 14 16 7.3132 4.2442 2.3305 15 8 7.1850 4.5873 0.9575 16 8 8.5761 4.2842 2.9808 17 6 6.0598 5.1033 3.3211 18 6 6.3623 6.6030 3.3371 19 6 5.3213 7.3167 4.1605 20 1 4.5235 6.7567 4.6257 21 6 5.3868 8.6847 4.3194 22 7 4.4781 9.3076 5.0376 23 14 6.7663 9.6534 3.5144 24 1 6.3440 10.0808 2.1564 25 1 7.0754 10.8510 4.3364 26 1 7.9762 8.7987 3.4105 27 6 2.0399 -0.7212 1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2072 -2.1392 33 1 3.9333 -1.2347 -2.1394 34 1 3.9329 0.3073 -1.2498 35 1 5.1705 -1.4415 -0.0009 36 1 3.7176 -2.4693 -0.0002 37 1 6.0601 0.1913 1.4008 38 1 5.2213 0.4878 2.9424 39 1 7.4465 2.0041 2.8342 40 1 5.0748 4.9363 2.8850 41 1 6.0757 4.7182 4.3406 42 1 7.3472 6.7704 3.7730 43 1 6.3460 6.9879 2.3174 44 1 4.5244 10.2700 5.1496 45 1 1.6766 -1.7490 1.2491 46 1 1.6766 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:30 Heat of formation + Delta-G solvation = -181.068236 kcal Electronic energy + Delta-G solvation = -27275.226941 eV Core-core repulsion = 23291.384178 eV Total energy + Delta-G solvation = -3983.842763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38468 -39.45423 -36.89321 -36.55438 -35.77530 -34.55777 -33.95340 -32.53801 -31.49704 -30.70362 -28.20287 -26.65678 -25.99990 -22.83407 -22.09080 -21.54320 -21.29430 -19.92661 -19.44798 -18.18292 -17.69545 -17.02244 -16.60179 -16.32916 -15.80951 -15.68829 -15.28548 -15.14517 -14.75335 -14.36070 -14.29150 -14.04119 -13.71152 -13.43692 -13.06565 -12.83035 -12.67885 -12.57006 -12.45954 -12.13787 -12.09539 -11.93695 -11.88366 -11.77199 -11.67677 -11.28854 -11.24113 -11.15067 -10.94342 -10.79429 -10.53908 -10.43503 -10.29890 -10.26394 -10.07886 -9.79636 -9.63988 -9.35227 -8.64904 -6.15038 -4.16497 0.33499 1.98524 2.41635 3.28408 3.31218 3.35247 3.38652 3.88905 4.11728 4.37085 4.37847 4.41723 4.49311 4.53081 4.66910 4.76685 4.83200 4.85097 4.90821 4.98553 5.15702 5.16276 5.22234 5.30140 5.43803 5.45938 5.48227 5.53582 5.56415 5.63780 5.69019 5.77556 5.96057 6.03761 6.07463 6.10218 6.25577 6.34932 6.45691 6.80080 6.80767 6.92957 7.41296 7.54698 8.37657 8.86061 9.44029 10.97310 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002805 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.834964 B = 9980.388755 C =11061.455666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.063 0.937 9 O -0.349 6.349 10 C 0.042 3.958 11 C 0.531 3.469 12 O -0.464 6.464 13 N -1.057 6.057 14 S 2.565 3.435 15 O -0.936 6.936 16 O -0.953 6.953 17 C -0.568 4.568 18 C -0.005 4.005 19 C -0.519 4.519 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.870 3.130 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 C -0.108 4.108 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.429 0.571 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.267 0.733 45 H 0.074 0.926 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -26.978 -7.301 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.179 4.179 7 C 0.029 3.971 8 H 0.081 0.919 9 O -0.267 6.267 10 C -0.040 4.040 11 C 0.316 3.684 12 O -0.332 6.332 13 N -0.820 5.820 14 S 2.665 3.335 15 O -0.927 6.927 16 O -0.943 6.943 17 C -0.703 4.703 18 C -0.045 4.045 19 C -0.558 4.558 20 H 0.097 0.903 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.696 3.304 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 C -0.146 4.146 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.264 0.736 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.332 -25.775 -8.256 27.097 hybrid contribution 0.646 -0.092 0.446 0.791 sum -0.686 -25.867 -7.810 27.029 Atomic orbital electron populations 1.21836 0.95417 1.01314 1.01916 1.21090 0.95068 1.01016 0.93978 0.89703 1.21572 0.95429 1.00087 0.97834 1.21450 0.95753 1.01751 0.96621 1.22034 1.00625 0.99412 0.95796 1.22229 0.95213 0.82530 0.97105 0.91857 1.88095 1.33919 1.27254 1.77480 1.22335 0.89079 0.93241 0.99339 1.20244 0.79800 0.91689 0.76666 1.90947 1.49796 1.54452 1.38011 1.55357 1.29646 1.31947 1.65094 1.06716 0.76856 0.73239 0.76726 1.93611 1.86844 1.80795 1.31402 1.93600 1.38679 1.84403 1.77665 1.30178 1.16119 1.10702 1.13293 1.19436 0.99360 0.86681 0.99016 1.20816 1.11014 0.92414 1.31541 0.90311 1.24972 0.95863 0.97583 0.94629 1.69881 1.34457 1.09527 1.39404 0.86920 0.83242 0.80161 0.80092 1.19593 1.20741 1.18643 1.21692 0.92624 1.01064 0.99209 0.92588 0.92690 0.93095 0.92465 0.92030 0.92340 0.90779 0.91921 0.91048 0.89564 0.89239 0.73618 0.84434 0.85374 0.94844 0.95090 0.92351 0.90730 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.15 0.34 -0.82 16 2 C -0.09 -0.82 2.57 -90.63 -0.23 -1.06 16 3 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 4 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.12 -0.98 5.78 -26.73 -0.15 -1.13 16 6 C -0.14 -0.96 5.63 -26.74 -0.15 -1.11 16 7 C 0.09 0.66 2.92 -26.70 -0.08 0.58 16 8 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 9 O -0.35 -3.74 8.17 -55.14 -0.45 -4.19 16 10 C 0.04 0.35 6.23 36.00 0.22 0.58 16 11 C 0.53 6.84 7.64 -10.99 -0.08 6.75 16 12 O -0.46 -8.26 14.60 -22.95 -0.34 -8.59 16 13 N -1.06 -12.23 5.60 31.22 0.17 -12.06 16 14 S 2.56 43.78 5.11 -107.50 -0.55 43.23 16 15 O -0.94 -19.49 17.04 -64.79 -1.10 -20.59 16 16 O -0.95 -17.47 18.08 -57.54 -1.04 -18.51 16 17 C -0.57 -10.84 5.82 37.16 0.22 -10.63 16 18 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 19 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 20 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 23 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 27 C -0.11 -0.83 4.95 -26.71 -0.13 -0.96 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 38 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 39 H 0.43 2.94 8.79 -34.47 -0.30 2.63 16 40 H 0.14 2.65 7.19 -51.92 -0.37 2.28 16 41 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 42 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 43 H 0.03 0.75 7.57 -51.93 -0.39 0.35 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -37.58 381.35 -9.88 -47.46 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.70 Total: -0.84 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -0.73 Total: -22.13 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.95 Total: -38.61 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.93 Total: -51.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.55 Total: 43.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.58 -9.88 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.604 kcal (2) G-P(sol) polarization free energy of solvation -37.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds