Wall clock time and date at job start Tue Mar 31 2020 17:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46824 * 2 1 4 4 C 1.52998 * 109.47257 * 240.00499 * 2 1 3 5 5 C 1.53004 * 109.47245 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47171 * 59.99719 * 5 4 2 7 7 C 1.52998 * 109.47265 * 300.00268 * 6 5 4 8 8 H 1.09004 * 109.47785 * 179.97438 * 7 6 5 9 9 O 1.42899 * 109.47141 * 299.99845 * 7 6 5 10 10 C 1.42905 * 114.00205 * 270.00117 * 9 7 6 11 11 C 1.50695 * 109.47097 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00361 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00001 * 179.97438 * 11 10 9 14 14 S 1.65599 * 120.00250 * 180.02562 * 13 11 10 15 15 O 1.42105 * 104.27655 * 308.93058 * 14 13 11 16 16 O 1.42101 * 104.27764 * 181.07495 * 14 13 11 17 17 C 1.81395 * 104.44748 * 65.00363 * 14 13 11 18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47535 * 180.02562 * 18 17 14 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00073 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99777 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47051 * 90.00395 * 23 21 19 25 25 H 1.48506 * 109.47098 * 210.00230 * 23 21 19 26 26 H 1.48495 * 109.47181 * 330.00007 * 23 21 19 27 27 C 1.52993 * 109.47223 * 120.00179 * 2 1 3 28 28 H 1.09006 * 109.47397 * 299.99846 * 1 2 3 29 29 H 1.09009 * 109.47391 * 59.99763 * 1 2 3 30 30 H 1.08994 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47190 * 299.99872 * 4 2 1 32 32 H 1.08998 * 109.47151 * 60.00055 * 4 2 1 33 33 H 1.08996 * 109.46939 * 179.97438 * 5 4 2 34 34 H 1.09005 * 109.46889 * 299.99533 * 5 4 2 35 35 H 1.09001 * 109.47270 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47367 * 60.00106 * 6 5 4 37 37 H 1.08997 * 109.46847 * 59.99292 * 10 9 7 38 38 H 1.09003 * 109.46866 * 300.00038 * 10 9 7 39 39 H 0.97001 * 119.99746 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.47393 * 299.99669 * 17 14 13 41 41 H 1.08994 * 109.47678 * 60.00285 * 17 14 13 42 42 H 1.09004 * 109.47080 * 299.99725 * 18 17 14 43 43 H 1.09005 * 109.47285 * 59.99790 * 18 17 14 44 44 H 0.97008 * 119.99981 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47367 * 60.00153 * 27 2 1 46 46 H 1.08996 * 109.47375 * 300.00007 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2488 8 1 3.9338 -1.2341 2.1389 9 8 4.0463 0.6271 1.2487 10 6 5.3061 0.7988 1.9011 11 6 5.7093 2.2496 1.8409 12 8 4.9888 3.0571 1.2936 13 7 6.8703 2.6499 2.3961 14 16 7.3132 4.2442 2.3305 15 8 7.1850 4.5873 0.9575 16 8 8.5761 4.2842 2.9808 17 6 6.0598 5.1033 3.3211 18 6 6.3623 6.6030 3.3371 19 6 5.3213 7.3167 4.1605 20 1 4.5235 6.7567 4.6257 21 6 5.3868 8.6847 4.3194 22 7 4.4781 9.3076 5.0376 23 14 6.7663 9.6534 3.5144 24 1 6.3440 10.0808 2.1564 25 1 7.0754 10.8510 4.3364 26 1 7.9762 8.7987 3.4105 27 6 2.0399 -0.7212 1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2072 -2.1392 33 1 3.9333 -1.2347 -2.1394 34 1 3.9329 0.3073 -1.2498 35 1 5.1705 -1.4415 -0.0009 36 1 3.7176 -2.4693 -0.0002 37 1 6.0601 0.1913 1.4008 38 1 5.2213 0.4878 2.9424 39 1 7.4465 2.0041 2.8342 40 1 5.0748 4.9363 2.8850 41 1 6.0757 4.7182 4.3406 42 1 7.3472 6.7704 3.7730 43 1 6.3460 6.9879 2.3174 44 1 4.5244 10.2700 5.1496 45 1 1.6766 -1.7490 1.2491 46 1 1.6766 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:29 Heat of formation + Delta-G solvation = -208.977788 kcal Electronic energy + Delta-G solvation = -27276.437190 eV Core-core repulsion = 23291.384178 eV Total energy + Delta-G solvation = -3985.053012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33973 -40.18695 -38.34209 -37.30739 -37.24568 -35.98430 -35.65442 -33.53609 -33.14014 -31.31281 -28.96100 -27.95395 -27.25068 -23.43206 -23.40423 -22.90743 -22.15354 -20.85202 -20.45066 -19.59037 -19.09580 -18.51769 -17.58355 -17.15391 -16.92625 -16.80480 -16.43794 -16.29458 -16.09585 -15.58751 -15.33374 -15.13421 -14.85802 -14.75711 -14.13436 -13.92473 -13.83533 -13.65381 -13.42504 -13.30104 -13.23075 -13.13866 -13.09187 -13.05419 -12.74723 -12.67747 -12.34216 -12.29158 -12.14376 -11.96034 -11.78408 -11.73071 -11.46856 -11.31304 -11.21722 -11.12111 -10.86798 -10.84406 -10.37331 -8.38636 -6.45318 -1.06745 0.96577 1.27353 1.31838 1.32583 1.43011 2.28139 2.44364 2.60415 2.94990 3.07658 3.34871 3.75465 3.80982 3.85886 3.93584 3.95286 3.97942 4.21901 4.22873 4.30874 4.31995 4.43385 4.49468 4.56702 4.65343 4.73459 4.84074 4.93552 4.94768 4.99345 5.01492 5.04161 5.10805 5.19499 5.37308 5.38300 5.43350 5.44326 5.47461 5.61869 5.67964 6.13595 6.22649 6.48495 6.60167 7.18847 8.77145 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002805 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.834964 B = 9980.388755 C =11061.455666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.044 0.956 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.082 3.918 8 H 0.094 0.906 9 O -0.386 6.386 10 C 0.043 3.957 11 C 0.528 3.472 12 O -0.520 6.520 13 N -1.033 6.033 14 S 2.605 3.395 15 O -0.974 6.974 16 O -0.961 6.961 17 C -0.581 4.581 18 C -0.015 4.015 19 C -0.531 4.531 20 H 0.046 0.954 21 C 0.013 3.987 22 N -0.940 5.940 23 Si 0.928 3.072 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.244 1.244 27 C -0.109 4.109 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.454 0.546 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.271 0.729 45 H 0.098 0.902 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -30.204 -7.279 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.063 0.937 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.175 4.175 7 C 0.025 3.975 8 H 0.112 0.888 9 O -0.305 6.305 10 C -0.038 4.038 11 C 0.315 3.685 12 O -0.393 6.393 13 N -0.802 5.802 14 S 2.703 3.297 15 O -0.964 6.964 16 O -0.951 6.951 17 C -0.713 4.713 18 C -0.054 4.054 19 C -0.570 4.570 20 H 0.065 0.935 21 C -0.186 4.186 22 N -0.579 5.579 23 Si 0.750 3.250 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.167 1.167 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.295 0.705 40 H 0.147 0.853 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.473 -29.021 -8.198 30.160 hybrid contribution 0.001 0.796 0.453 0.916 sum 0.474 -28.225 -7.745 29.272 Atomic orbital electron populations 1.21822 0.94899 1.02266 1.01306 1.21047 0.95562 0.99172 0.95569 0.93746 1.21552 0.95414 1.00822 0.96859 1.21442 0.95845 1.00195 0.98303 1.22048 1.01241 0.99988 0.94235 1.22450 0.94845 0.81469 0.98767 0.88768 1.88081 1.34950 1.29361 1.78148 1.22585 0.89397 0.89642 1.02153 1.21276 0.78828 0.93478 0.74911 1.90938 1.51458 1.56258 1.40603 1.54758 1.30062 1.30428 1.64996 1.05238 0.75451 0.73964 0.75077 1.93568 1.87077 1.82388 1.33389 1.93585 1.38677 1.85240 1.77624 1.30187 1.17112 1.08289 1.15727 1.19380 0.98389 0.89761 0.97875 1.21138 1.11288 0.92886 1.31673 0.93548 1.25904 0.98535 0.98854 0.95258 1.70012 1.36624 1.10125 1.41162 0.85982 0.80608 0.79110 0.79287 1.18953 1.19527 1.16702 1.21732 0.93248 1.01949 0.97711 0.93277 0.93300 0.91251 0.90478 0.93080 0.91503 0.94108 0.90923 0.88906 0.85881 0.85043 0.70537 0.85330 0.83043 0.93810 0.95408 0.92012 0.88318 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.19 71.98 0.66 -1.62 16 2 C -0.09 -1.69 2.57 -10.80 -0.03 -1.72 16 3 H 0.04 1.14 7.68 -2.38 -0.02 1.12 16 4 C -0.11 -1.66 5.20 30.59 0.16 -1.50 16 5 C -0.12 -1.88 5.78 30.59 0.18 -1.70 16 6 C -0.14 -1.44 5.63 30.59 0.17 -1.27 16 7 C 0.08 1.00 2.92 30.61 0.09 1.09 16 8 H 0.09 0.58 7.79 -2.38 -0.02 0.56 16 9 O -0.39 -7.69 8.17 -129.94 -1.06 -8.76 16 10 C 0.04 0.59 6.23 71.23 0.44 1.03 16 11 C 0.53 12.77 7.64 87.66 0.67 13.44 16 12 O -0.52 -18.90 14.60 24.25 0.35 -18.54 16 13 N -1.03 -21.47 5.60 -173.54 -0.97 -22.44 16 14 S 2.61 85.79 5.11 -56.49 -0.29 85.51 16 15 O -0.97 -40.32 17.04 -120.72 -2.06 -42.38 16 16 O -0.96 -33.08 18.08 -127.65 -2.31 -35.39 16 17 C -0.58 -22.20 5.82 71.98 0.42 -21.78 16 18 C -0.01 -0.72 4.05 29.85 0.12 -0.60 16 19 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 20 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 21 C 0.01 0.78 5.47 84.65 0.46 1.24 16 22 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 23 Si 0.93 44.59 27.47 68.60 1.88 46.47 16 24 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.24 -10.90 6.54 99.48 0.65 -10.24 16 27 C -0.11 -1.47 4.95 30.61 0.15 -1.32 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.90 7.68 -2.38 -0.02 0.88 16 35 H 0.07 0.63 7.87 -2.39 -0.02 0.61 16 36 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.12 0.80 7.87 -2.39 -0.02 0.78 16 38 H 0.13 0.72 8.09 -2.39 -0.02 0.70 16 39 H 0.45 4.49 8.79 -96.74 -0.85 3.64 16 40 H 0.13 5.15 7.19 -2.39 -0.02 5.13 16 41 H 0.15 4.89 8.14 -2.39 -0.02 4.87 16 42 H 0.04 2.02 7.20 -2.39 -0.02 2.00 16 43 H 0.03 1.35 7.57 -2.38 -0.02 1.33 16 44 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 45 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -86.22 381.35 -0.34 -86.56 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.06 Total: 13.17 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.75 Total: -45.52 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -0.67 Total: -81.12 kcal Atomic # 8 Polarization: -99.99 SS G_CDS: -5.07 Total: -105.06 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 16 Polarization: 85.79 SS G_CDS: -0.29 Total: 85.51 kcal Total: -86.22 -0.34 -86.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.420 kcal (2) G-P(sol) polarization free energy of solvation -86.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds