Wall clock time and date at job start Tue Mar 31 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87128 * 2 1 4 4 C 1.54096 * 110.00542 * 121.08647 * 2 1 3 5 5 C 1.54812 * 104.18779 * 121.52420 * 4 2 1 6 6 H 1.08998 * 110.90949 * 262.68617 * 5 4 2 7 7 C 1.50700 * 110.93935 * 139.09166 * 5 4 2 8 8 O 1.20823 * 119.99878 * 2.94789 * 7 5 4 9 9 O 1.34230 * 120.00090 * 182.94852 * 7 5 4 10 10 C 1.45196 * 116.99968 * 179.97438 * 9 7 5 11 11 C 1.50705 * 109.47311 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99722 * 354.99329 * 11 10 9 13 13 N 1.34771 * 120.00366 * 174.99194 * 11 10 9 14 14 C 1.37141 * 119.99739 * 6.00275 * 13 11 10 15 15 H 1.08001 * 119.99961 * 53.62620 * 14 13 11 16 16 C 1.38887 * 120.00203 * 233.62069 * 14 13 11 17 17 N 1.31431 * 119.99702 * 5.47301 * 16 14 13 18 18 Si 1.86803 * 120.00333 * 185.46593 * 16 14 13 19 19 H 1.48507 * 109.46394 * 90.00418 * 18 16 14 20 20 H 1.48492 * 109.47179 * 210.00265 * 18 16 14 21 21 H 1.48497 * 109.46985 * 330.00849 * 18 16 14 22 22 C 1.39789 * 120.00285 * 186.00457 * 13 11 10 23 23 C 1.38955 * 120.07287 * 8.28243 * 22 13 11 24 24 C 1.38094 * 119.91846 * 179.79111 * 23 22 13 25 25 C 1.38300 * 120.07620 * 0.46301 * 24 23 22 26 26 C 1.38307 * 120.15639 * 359.79184 * 25 24 23 27 27 C 1.38083 * 120.08002 * 359.97251 * 26 25 24 28 28 C 1.55002 * 102.09317 * 20.88183 * 5 4 2 29 29 O 1.43741 * 109.87873 * 238.99728 * 2 1 3 30 30 H 1.09000 * 109.47305 * 179.55325 * 1 2 3 31 31 H 1.09002 * 109.46828 * 299.55388 * 1 2 3 32 32 H 1.08998 * 109.47123 * 59.54980 * 1 2 3 33 33 H 1.09000 * 110.48851 * 2.84611 * 4 2 1 34 34 H 1.09001 * 110.49072 * 240.19646 * 4 2 1 35 35 H 1.08993 * 109.47408 * 300.00512 * 10 9 7 36 36 H 1.09005 * 109.46658 * 60.00632 * 10 9 7 37 37 H 0.96996 * 119.99510 * 184.99652 * 17 16 14 38 38 H 1.07996 * 120.04382 * 359.97438 * 23 22 13 39 39 H 1.07996 * 119.95960 * 180.25420 * 24 23 22 40 40 H 1.07999 * 119.92336 * 179.76621 * 25 24 23 41 41 H 1.08007 * 119.96069 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03850 * 179.97438 * 27 26 25 43 43 H 1.09000 * 110.61954 * 81.47294 * 28 5 4 44 44 H 1.08996 * 110.61790 * 204.31956 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0572 -0.7476 1.2400 5 6 2.9244 -1.8888 0.6549 6 1 2.3608 -2.8205 0.6074 7 6 4.1891 -2.0684 1.4545 8 8 4.3797 -1.3987 2.4419 9 8 5.1037 -2.9723 1.0698 10 6 6.2978 -3.0908 1.8873 11 6 7.2025 -4.1462 1.3051 12 8 6.8345 -4.8031 0.3543 13 7 8.4205 -4.3600 1.8410 14 6 8.7890 -3.7062 2.9888 15 1 8.1610 -3.7593 3.8658 16 6 9.9698 -2.9759 3.0234 17 7 10.6795 -2.8217 1.9280 18 14 10.5493 -2.2125 4.6269 19 1 11.4162 -3.1777 5.3496 20 1 11.3194 -0.9765 4.3368 21 1 9.3731 -1.8769 5.4688 22 6 9.3082 -5.2482 1.2268 23 6 9.0094 -5.7793 -0.0220 24 6 9.8907 -6.6531 -0.6277 25 6 11.0649 -7.0072 0.0114 26 6 11.3630 -6.4846 1.2568 27 6 10.4887 -5.6066 1.8662 28 6 3.2399 -1.3601 -0.7677 29 8 2.0188 -0.6963 -1.1587 30 1 -0.3634 -1.0276 -0.0080 31 1 -0.3633 0.5069 0.8940 32 1 -0.3633 0.5208 -0.8859 33 1 1.2294 -1.1563 1.8196 34 1 2.6646 -0.0844 1.8559 35 1 6.8210 -2.1349 1.9070 36 1 6.0168 -3.3723 2.9022 37 1 11.5393 -2.3744 1.9661 38 1 8.0905 -5.5067 -0.5197 39 1 9.6610 -7.0630 -1.6001 40 1 11.7506 -7.6937 -0.4629 41 1 12.2811 -6.7630 1.7529 42 1 10.7219 -5.1992 2.8389 43 1 4.0689 -0.6530 -0.7393 44 1 3.4640 -2.1858 -1.4430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784273377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:00 Heat of formation + Delta-G solvation = -121.518165 kcal Electronic energy + Delta-G solvation = -28587.134160 eV Core-core repulsion = 24470.429730 eV Total energy + Delta-G solvation = -4116.704430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79650 -39.81153 -39.10500 -37.32325 -36.13606 -35.08553 -32.66859 -32.06006 -32.01691 -29.83789 -29.62819 -27.52396 -26.17533 -25.29120 -23.92299 -21.94323 -21.51684 -21.21782 -20.19571 -19.59665 -18.00483 -17.98531 -16.68000 -16.57299 -16.13541 -15.78002 -15.61622 -15.50998 -15.26458 -14.97943 -14.39699 -14.30054 -13.72628 -13.57980 -13.19604 -12.99816 -12.87340 -12.74881 -12.52697 -12.40064 -12.26783 -12.20073 -11.76143 -11.64234 -11.47172 -11.34579 -11.18464 -11.16303 -11.03031 -10.85758 -10.53672 -10.39631 -10.36077 -10.09793 -9.94082 -9.36475 -8.90668 -8.39106 -7.85908 -7.00195 -6.42325 -4.65512 2.22930 2.32666 2.49992 2.56734 2.98565 3.07970 3.10195 3.55914 3.63821 3.88296 4.09941 4.33771 4.46028 4.65828 4.69996 4.81264 4.90212 5.00816 5.06696 5.15711 5.38660 5.42646 5.50300 5.55008 5.68340 5.68881 5.73450 5.76602 5.82237 5.84504 5.91201 5.96759 6.10788 6.59270 6.61015 6.63366 6.65768 6.79798 7.04051 7.15157 7.42333 7.53862 7.56762 7.66516 7.82789 7.96808 8.30979 8.72762 9.05515 9.44474 10.38133 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003123 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.154058 B = 8962.295026 C =10469.883582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.142 4.142 5 C -0.117 4.117 6 H 0.124 0.876 7 C 0.469 3.531 8 O -0.505 6.505 9 O -0.333 6.333 10 C 0.072 3.928 11 C 0.492 3.508 12 O -0.548 6.548 13 N -0.378 5.378 14 C -0.383 4.383 15 H 0.096 0.904 16 C 0.060 3.940 17 N -0.836 5.836 18 Si 0.917 3.083 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.194 3.806 23 C -0.181 4.181 24 C -0.117 4.117 25 C -0.172 4.172 26 C -0.119 4.119 27 C -0.105 4.105 28 C 0.063 3.937 29 O -0.369 6.369 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.277 0.723 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 2.903 -0.956 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.180 4.180 5 C -0.136 4.136 6 H 0.142 0.858 7 C 0.311 3.689 8 O -0.393 6.393 9 O -0.248 6.248 10 C -0.005 4.005 11 C 0.283 3.717 12 O -0.431 6.431 13 N -0.087 5.087 14 C -0.510 4.510 15 H 0.113 0.887 16 C -0.151 4.151 17 N -0.467 5.467 18 Si 0.742 3.258 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.188 1.188 22 C 0.098 3.902 23 C -0.200 4.200 24 C -0.136 4.136 25 C -0.191 4.191 26 C -0.138 4.138 27 C -0.125 4.125 28 C -0.014 4.014 29 O -0.288 6.288 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.182 0.818 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.142 0.858 43 H 0.087 0.913 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.408 2.990 -1.387 11.875 hybrid contribution 0.977 0.524 1.276 1.690 sum -10.432 3.514 -0.111 11.008 Atomic orbital electron populations 1.21937 0.93453 1.02954 1.02456 1.22792 0.95350 0.96066 0.84521 0.91011 1.23072 0.99810 0.96658 0.98417 1.22568 0.92175 1.02483 0.96382 0.85818 1.23168 0.84759 0.77128 0.83815 1.90665 1.77584 1.44768 1.26304 1.86476 1.29315 1.55088 1.53908 1.22628 0.82735 1.01281 0.93820 1.20186 0.83799 0.84295 0.83468 1.90340 1.74988 1.49353 1.28426 1.40834 1.10626 1.34583 1.22636 1.19410 1.10740 1.30413 0.90404 0.88680 1.25635 0.97048 0.94410 0.98046 1.69962 1.12338 1.37461 1.26901 0.86065 0.79446 0.78971 0.81308 1.19653 1.20407 1.18782 1.18124 0.91077 0.89179 0.91834 1.22366 1.03025 0.99575 0.95066 1.20845 0.94543 0.99185 0.98980 1.20778 0.98136 1.03487 0.96729 1.20736 0.98800 0.98520 0.95759 1.20750 0.93620 0.97430 1.00746 1.23478 0.87879 0.97221 0.92809 1.88915 1.39313 1.67618 1.32965 0.91739 0.91160 0.91812 0.89387 0.88463 0.87718 0.88717 0.91270 0.81834 0.87577 0.88034 0.87659 0.85820 0.91324 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.37 37.16 0.35 -0.79 16 2 C 0.07 0.68 4.05 -26.16 -0.11 0.57 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.43 6.05 -25.20 -0.15 -1.58 16 5 C -0.12 -1.36 3.63 -89.76 -0.33 -1.69 16 6 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.47 7.31 7.27 36.01 0.26 7.57 16 8 O -0.51 -8.88 15.23 -18.75 -0.29 -9.16 16 9 O -0.33 -6.04 9.76 -45.89 -0.45 -6.49 16 10 C 0.07 1.42 4.77 36.01 0.17 1.59 16 11 C 0.49 11.44 7.61 -10.99 -0.08 11.36 16 12 O -0.55 -13.41 13.03 -14.05 -0.18 -13.59 16 13 N -0.38 -9.23 2.66 -58.98 -0.16 -9.39 16 14 C -0.38 -9.11 7.40 -14.94 -0.11 -9.22 16 15 H 0.10 2.14 7.78 -52.49 -0.41 1.73 16 16 C 0.06 1.42 3.85 -17.48 -0.07 1.35 16 17 N -0.84 -21.16 11.62 55.49 0.64 -20.51 16 18 Si 0.92 18.28 29.56 -169.99 -5.02 13.26 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C 0.19 4.77 5.71 -83.70 -0.48 4.29 16 23 C -0.18 -4.23 8.97 -39.37 -0.35 -4.59 16 24 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 25 C -0.17 -3.34 10.04 -39.53 -0.40 -3.73 16 26 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 27 C -0.10 -2.43 7.86 -39.37 -0.31 -2.74 16 28 C 0.06 0.73 7.16 38.21 0.27 1.00 16 29 O -0.37 -4.36 11.19 -35.23 -0.39 -4.76 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.74 7.70 -51.93 -0.40 0.34 16 34 H 0.10 1.09 6.90 -51.93 -0.36 0.73 16 35 H 0.10 2.12 8.04 -51.93 -0.42 1.70 16 36 H 0.09 1.76 8.07 -51.93 -0.42 1.34 16 37 H 0.28 6.65 8.32 -40.82 -0.34 6.31 16 38 H 0.17 3.99 4.75 -55.01 -0.26 3.73 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.12 2.94 6.03 -52.48 -0.32 2.62 16 43 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 44 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -28.93 366.82 -8.38 -37.31 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.94 Total: 10.02 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.12 Total: -2.22 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.49 Total: -29.90 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.31 Total: -34.00 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.93 -8.38 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784273377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.208 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds