Wall clock time and date at job start Tue Mar 31 2020 17:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87128 * 2 1 4 4 C 1.54096 * 110.00542 * 121.08647 * 2 1 3 5 5 C 1.54812 * 104.18779 * 121.52420 * 4 2 1 6 6 H 1.08998 * 110.90949 * 262.68617 * 5 4 2 7 7 C 1.50700 * 110.93935 * 139.09166 * 5 4 2 8 8 O 1.20823 * 119.99878 * 2.94789 * 7 5 4 9 9 O 1.34230 * 120.00090 * 182.94852 * 7 5 4 10 10 C 1.45196 * 116.99968 * 179.97438 * 9 7 5 11 11 C 1.50705 * 109.47311 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99722 * 354.99329 * 11 10 9 13 13 N 1.34771 * 120.00366 * 174.99194 * 11 10 9 14 14 C 1.37141 * 119.99739 * 6.00275 * 13 11 10 15 15 H 1.08001 * 119.99961 * 53.62620 * 14 13 11 16 16 C 1.38887 * 120.00203 * 233.62069 * 14 13 11 17 17 N 1.31431 * 119.99702 * 5.47301 * 16 14 13 18 18 Si 1.86803 * 120.00333 * 185.46593 * 16 14 13 19 19 H 1.48507 * 109.46394 * 90.00418 * 18 16 14 20 20 H 1.48492 * 109.47179 * 210.00265 * 18 16 14 21 21 H 1.48497 * 109.46985 * 330.00849 * 18 16 14 22 22 C 1.39789 * 120.00285 * 186.00457 * 13 11 10 23 23 C 1.38955 * 120.07287 * 8.28243 * 22 13 11 24 24 C 1.38094 * 119.91846 * 179.79111 * 23 22 13 25 25 C 1.38300 * 120.07620 * 0.46301 * 24 23 22 26 26 C 1.38307 * 120.15639 * 359.79184 * 25 24 23 27 27 C 1.38083 * 120.08002 * 359.97251 * 26 25 24 28 28 C 1.55002 * 102.09317 * 20.88183 * 5 4 2 29 29 O 1.43741 * 109.87873 * 238.99728 * 2 1 3 30 30 H 1.09000 * 109.47305 * 179.55325 * 1 2 3 31 31 H 1.09002 * 109.46828 * 299.55388 * 1 2 3 32 32 H 1.08998 * 109.47123 * 59.54980 * 1 2 3 33 33 H 1.09000 * 110.48851 * 2.84611 * 4 2 1 34 34 H 1.09001 * 110.49072 * 240.19646 * 4 2 1 35 35 H 1.08993 * 109.47408 * 300.00512 * 10 9 7 36 36 H 1.09005 * 109.46658 * 60.00632 * 10 9 7 37 37 H 0.96996 * 119.99510 * 184.99652 * 17 16 14 38 38 H 1.07996 * 120.04382 * 359.97438 * 23 22 13 39 39 H 1.07996 * 119.95960 * 180.25420 * 24 23 22 40 40 H 1.07999 * 119.92336 * 179.76621 * 25 24 23 41 41 H 1.08007 * 119.96069 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03850 * 179.97438 * 27 26 25 43 43 H 1.09000 * 110.61954 * 81.47294 * 28 5 4 44 44 H 1.08996 * 110.61790 * 204.31956 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0572 -0.7476 1.2400 5 6 2.9244 -1.8888 0.6549 6 1 2.3608 -2.8205 0.6074 7 6 4.1891 -2.0684 1.4545 8 8 4.3797 -1.3987 2.4419 9 8 5.1037 -2.9723 1.0698 10 6 6.2978 -3.0908 1.8873 11 6 7.2025 -4.1462 1.3051 12 8 6.8345 -4.8031 0.3543 13 7 8.4205 -4.3600 1.8410 14 6 8.7890 -3.7062 2.9888 15 1 8.1610 -3.7593 3.8658 16 6 9.9698 -2.9759 3.0234 17 7 10.6795 -2.8217 1.9280 18 14 10.5493 -2.2125 4.6269 19 1 11.4162 -3.1777 5.3496 20 1 11.3194 -0.9765 4.3368 21 1 9.3731 -1.8769 5.4688 22 6 9.3082 -5.2482 1.2268 23 6 9.0094 -5.7793 -0.0220 24 6 9.8907 -6.6531 -0.6277 25 6 11.0649 -7.0072 0.0114 26 6 11.3630 -6.4846 1.2568 27 6 10.4887 -5.6066 1.8662 28 6 3.2399 -1.3601 -0.7677 29 8 2.0188 -0.6963 -1.1587 30 1 -0.3634 -1.0276 -0.0080 31 1 -0.3633 0.5069 0.8940 32 1 -0.3633 0.5208 -0.8859 33 1 1.2294 -1.1563 1.8196 34 1 2.6646 -0.0844 1.8559 35 1 6.8210 -2.1349 1.9070 36 1 6.0168 -3.3723 2.9022 37 1 11.5393 -2.3744 1.9661 38 1 8.0905 -5.5067 -0.5197 39 1 9.6610 -7.0630 -1.6001 40 1 11.7506 -7.6937 -0.4629 41 1 12.2811 -6.7630 1.7529 42 1 10.7219 -5.1992 2.8389 43 1 4.0689 -0.6530 -0.7393 44 1 3.4640 -2.1858 -1.4430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784273377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:59 Heat of formation + Delta-G solvation = -135.884036 kcal Electronic energy + Delta-G solvation = -28587.757111 eV Core-core repulsion = 24470.429730 eV Total energy + Delta-G solvation = -4117.327381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09163 -41.43508 -40.20265 -38.97756 -37.57942 -36.86756 -33.84291 -33.59978 -32.87325 -31.49575 -31.28104 -29.09452 -27.14755 -26.94134 -25.07425 -23.53247 -22.95441 -22.36961 -21.39646 -21.28922 -19.72019 -19.21145 -18.00898 -17.90983 -17.76855 -17.36341 -16.94907 -16.75691 -16.40556 -16.35419 -15.92579 -15.78105 -15.13835 -14.86181 -14.67868 -14.53290 -14.20812 -14.04628 -13.90943 -13.51929 -13.46193 -13.37433 -13.27096 -13.05340 -12.98738 -12.83065 -12.48742 -12.41280 -12.13675 -11.95726 -11.94018 -11.83924 -11.75304 -11.60799 -11.13316 -10.79023 -10.66632 -10.17148 -9.54617 -8.79061 -8.20734 -6.51670 0.62619 0.80050 0.96026 1.20835 1.39756 1.44236 1.54567 1.84180 2.21141 2.62136 2.87697 2.88531 3.19671 3.34265 3.61437 3.65333 3.81176 3.89897 4.01192 4.08607 4.12952 4.21969 4.32111 4.35008 4.42777 4.56623 4.58358 4.66080 4.80737 4.89783 4.89939 4.91180 4.96341 5.09152 5.09451 5.25404 5.30107 5.31391 5.39415 5.75810 5.80819 5.82309 5.86816 5.97528 6.19259 6.48747 6.56838 6.90691 7.26019 7.64415 8.58818 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.003123 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.154058 B = 8962.295026 C =10469.883582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 H 0.075 0.925 4 C -0.136 4.136 5 C -0.112 4.112 6 H 0.145 0.855 7 C 0.470 3.530 8 O -0.526 6.526 9 O -0.343 6.343 10 C 0.084 3.916 11 C 0.479 3.521 12 O -0.569 6.569 13 N -0.389 5.389 14 C -0.394 4.394 15 H 0.102 0.898 16 C 0.027 3.973 17 N -0.871 5.871 18 Si 0.980 3.020 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.256 1.256 22 C 0.162 3.838 23 C -0.206 4.206 24 C -0.116 4.116 25 C -0.163 4.163 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.063 3.937 29 O -0.380 6.380 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.277 0.723 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 2.497 -0.645 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.093 0.907 4 C -0.174 4.174 5 C -0.131 4.131 6 H 0.163 0.837 7 C 0.314 3.686 8 O -0.415 6.415 9 O -0.258 6.258 10 C 0.007 3.993 11 C 0.271 3.729 12 O -0.453 6.453 13 N -0.099 5.099 14 C -0.520 4.520 15 H 0.120 0.880 16 C -0.181 4.181 17 N -0.503 5.503 18 Si 0.803 3.197 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.180 1.180 22 C 0.066 3.934 23 C -0.226 4.226 24 C -0.135 4.135 25 C -0.182 4.182 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.014 4.014 29 O -0.300 6.300 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.620 2.579 -1.072 11.951 hybrid contribution 1.035 0.607 1.111 1.636 sum -10.584 3.186 0.039 11.054 Atomic orbital electron populations 1.21943 0.91583 1.03425 1.03466 1.22974 0.96815 0.95885 0.83505 0.90710 1.23093 0.99882 0.95799 0.98624 1.22727 0.90330 1.04172 0.95846 0.83733 1.23946 0.84976 0.75901 0.83796 1.90652 1.78027 1.45330 1.27447 1.86500 1.29133 1.56223 1.53966 1.22343 0.83114 0.99612 0.94210 1.20703 0.84037 0.84772 0.83423 1.90316 1.75444 1.50274 1.29263 1.41065 1.11007 1.34877 1.22917 1.19713 1.11187 1.30507 0.90574 0.88017 1.26362 0.96744 0.94265 1.00755 1.70076 1.12701 1.38567 1.28905 0.85112 0.79048 0.77879 0.77704 1.18955 1.20713 1.18000 1.18489 0.91967 0.90203 0.92741 1.22388 1.03619 1.01300 0.95282 1.21221 0.94275 0.97938 1.00050 1.21224 0.97985 1.02937 0.96006 1.21141 0.99155 0.97217 0.96220 1.20797 0.94107 0.98792 1.00666 1.23455 0.87857 0.97249 0.92827 1.88913 1.39141 1.67841 1.34070 0.91513 0.89313 0.91691 0.87268 0.89740 0.88520 0.87656 0.91360 0.83417 0.84582 0.83831 0.84605 0.87144 0.92141 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.37 71.98 0.67 -1.22 16 2 C 0.07 1.16 4.05 30.96 0.13 1.29 16 3 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.14 -2.55 6.05 31.58 0.19 -2.36 16 5 C -0.11 -2.51 3.63 -10.24 -0.04 -2.55 16 6 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 7 C 0.47 14.67 7.27 71.24 0.52 15.19 16 8 O -0.53 -18.54 15.23 21.97 0.33 -18.20 16 9 O -0.34 -12.70 9.76 -45.07 -0.44 -13.14 16 10 C 0.08 3.43 4.77 71.24 0.34 3.77 16 11 C 0.48 23.18 7.61 87.66 0.67 23.84 16 12 O -0.57 -28.97 13.03 15.71 0.20 -28.77 16 13 N -0.39 -19.67 2.66 -458.91 -1.22 -20.89 16 14 C -0.39 -19.14 7.40 84.02 0.62 -18.52 16 15 H 0.10 4.66 7.78 -2.91 -0.02 4.63 16 16 C 0.03 1.28 3.85 84.91 0.33 1.61 16 17 N -0.87 -44.94 11.62 21.65 0.25 -44.69 16 18 Si 0.98 37.51 29.56 68.60 2.03 39.54 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 22 C 0.16 8.14 5.71 38.22 0.22 8.36 16 23 C -0.21 -9.83 8.97 22.41 0.20 -9.63 16 24 C -0.12 -4.59 10.04 22.25 0.22 -4.37 16 25 C -0.16 -5.84 10.04 22.30 0.22 -5.62 16 26 C -0.12 -4.63 10.04 22.25 0.22 -4.41 16 27 C -0.12 -5.74 7.86 22.40 0.18 -5.56 16 28 C 0.06 1.44 7.16 72.67 0.52 1.96 16 29 O -0.38 -8.60 11.19 -148.98 -1.67 -10.26 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.58 7.70 -2.39 -0.02 1.56 16 34 H 0.08 1.83 6.90 -2.39 -0.02 1.81 16 35 H 0.10 4.08 8.04 -2.39 -0.02 4.06 16 36 H 0.11 4.01 8.07 -2.38 -0.02 3.99 16 37 H 0.28 13.52 8.32 -92.71 -0.77 12.75 16 38 H 0.15 7.49 4.75 -42.84 -0.20 7.29 16 39 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.11 5.34 6.03 -2.91 -0.02 5.32 16 43 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16 44 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -63.70 366.82 5.53 -58.17 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.83 Total: 36.47 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.21 Total: 1.79 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.97 Total: -65.59 kcal Atomic # 8 Polarization: -68.81 SS G_CDS: -1.57 Total: -70.38 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -63.70 5.53 -58.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784273377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.718 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds