Wall clock time and date at job start Tue Mar 31 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.32734 * 2 1 4 4 C 1.54481 * 110.46572 * 237.69349 * 2 1 3 5 5 C 1.54513 * 104.05951 * 217.14181 * 4 2 1 6 6 H 1.09000 * 110.63011 * 118.70149 * 5 4 2 7 7 C 1.50704 * 110.50785 * 241.35322 * 5 4 2 8 8 O 1.20823 * 120.00312 * 356.09332 * 7 5 4 9 9 O 1.34229 * 119.99923 * 176.09577 * 7 5 4 10 10 C 1.45205 * 116.99779 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46784 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99964 * 180.02562 * 11 10 9 14 14 C 1.39233 * 120.00287 * 175.71365 * 13 11 10 15 15 C 1.39484 * 119.83542 * 215.01937 * 14 13 11 16 16 C 1.36376 * 120.16698 * 179.75734 * 15 14 13 17 17 C 1.40873 * 119.82969 * 0.51415 * 16 15 14 18 18 C 1.41145 * 120.16223 * 179.71875 * 17 16 15 19 19 H 1.08003 * 120.00120 * 214.80179 * 18 17 16 20 20 C 1.39909 * 120.00527 * 34.80263 * 18 17 16 21 21 N 1.30875 * 119.99469 * 355.55967 * 20 18 17 22 22 Si 1.86796 * 120.00579 * 175.55702 * 20 18 17 23 23 H 1.48499 * 109.46899 * 89.99736 * 22 20 18 24 24 H 1.48500 * 109.47388 * 210.00123 * 22 20 18 25 25 H 1.48503 * 109.47001 * 330.00098 * 22 20 18 26 26 C 1.40868 * 119.67128 * 359.73710 * 17 16 15 27 27 C 1.36377 * 119.83020 * 0.02562 * 26 17 16 28 28 C 1.54477 * 104.06576 * 359.97438 * 5 4 2 29 29 O 1.44419 * 110.37581 * 122.25586 * 2 1 3 30 30 H 1.08998 * 109.47366 * 299.19743 * 1 2 3 31 31 H 1.08998 * 109.47344 * 59.20366 * 1 2 3 32 32 H 1.09006 * 109.46675 * 179.20170 * 1 2 3 33 33 H 1.08998 * 110.51550 * 98.49152 * 4 2 1 34 34 H 1.09002 * 110.51110 * 335.78205 * 4 2 1 35 35 H 1.08993 * 109.47256 * 299.99809 * 10 9 7 36 36 H 1.09001 * 109.46713 * 60.00444 * 10 9 7 37 37 H 0.96999 * 119.99813 * 355.71308 * 13 11 10 38 38 H 1.07997 * 119.91407 * 0.02562 * 15 14 13 39 39 H 1.07996 * 120.08139 * 180.25003 * 16 15 14 40 40 H 0.96998 * 120.00175 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.08571 * 179.97438 * 26 17 16 42 42 H 1.07994 * 119.91541 * 180.02562 * 27 26 17 43 43 H 1.08994 * 110.37466 * 142.80901 * 28 5 4 44 44 H 1.08993 * 110.37399 * 265.15642 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3208 -1.5031 -0.6837 6 1 3.2027 -2.5832 -0.7708 7 6 4.5556 -1.0473 -1.4177 8 8 4.4590 -0.2720 -2.3393 9 8 5.7628 -1.5027 -1.0475 10 6 6.9079 -1.0215 -1.7996 11 6 8.1673 -1.6355 -1.2446 12 8 8.1058 -2.4034 -0.3078 13 7 9.3620 -1.3313 -1.7893 14 6 10.5325 -1.8274 -1.2217 15 6 11.6908 -1.0503 -1.2291 16 6 12.8398 -1.5275 -0.6706 17 6 12.8577 -2.8131 -0.0948 18 6 14.0446 -3.3163 0.4799 19 1 14.2741 -4.3694 0.4101 20 6 14.9239 -2.4511 1.1400 21 7 14.6904 -1.1634 1.1499 22 14 16.4309 -3.1337 2.0073 23 1 17.5732 -3.1709 1.0591 24 1 16.7738 -2.2647 3.1616 25 1 16.1437 -4.5082 2.4905 26 6 11.6853 -3.5940 -0.0958 27 6 10.5426 -3.1014 -0.6538 28 6 3.3886 -1.0835 0.8014 29 8 2.0328 -0.7225 1.1449 30 1 -0.3634 0.5013 0.8971 31 1 -0.3634 0.5261 -0.8827 32 1 -0.3633 -1.0276 -0.0143 33 1 2.3449 -0.0833 -2.0208 34 1 1.3314 -1.4927 -1.5770 35 1 6.7980 -1.3012 -2.8473 36 1 6.9664 0.0638 -1.7174 37 1 9.4063 -0.7668 -2.5769 38 1 11.6766 -0.0666 -1.6744 39 1 13.7348 -0.9231 -0.6735 40 1 15.3001 -0.5634 1.6072 41 1 11.6916 -4.5807 0.3434 42 1 9.6429 -3.6987 -0.6550 43 1 3.7261 -1.9178 1.4164 44 1 4.0523 -0.2277 0.9240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784283598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:40 Heat of formation + Delta-G solvation = -142.805194 kcal Electronic energy + Delta-G solvation = -27224.405281 eV Core-core repulsion = 23106.777776 eV Total energy + Delta-G solvation = -4117.627505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.23881 -39.88050 -39.24941 -37.40793 -36.58061 -34.52156 -33.03866 -32.85915 -32.29693 -29.90641 -29.53941 -28.23295 -26.47428 -24.96699 -23.99112 -21.99299 -21.69150 -20.91229 -20.52090 -19.83312 -18.39498 -17.61423 -17.35448 -17.06262 -16.64583 -16.22254 -15.97749 -15.87138 -15.27844 -15.20729 -14.83899 -14.14505 -13.92118 -13.70805 -13.37436 -13.17918 -12.80396 -12.77290 -12.67160 -12.57677 -12.46978 -12.17803 -11.81607 -11.76477 -11.43806 -11.40244 -11.27287 -11.20662 -11.11400 -10.95619 -10.76718 -10.74975 -10.21282 -10.08820 -9.55788 -9.51995 -9.20737 -8.96079 -7.60602 -6.94234 -6.66465 -4.39274 1.79652 2.05271 2.42814 2.92740 3.04016 3.07690 3.11303 3.24040 3.40419 3.63241 3.88896 3.94908 4.21621 4.40991 4.49977 4.64204 4.69539 4.71567 4.80087 4.90045 4.93832 4.95818 5.18992 5.23834 5.36446 5.43591 5.51907 5.57922 5.59850 5.72335 6.03584 6.13522 6.37750 6.37943 6.65133 6.83366 7.00962 7.13120 7.23206 7.35051 7.58176 7.65404 7.78842 8.00761 8.14998 8.25933 8.52892 8.62232 8.87960 8.93705 10.24528 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.001853 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.808135 B =15107.035831 C =15528.079040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.117 4.117 6 H 0.126 0.874 7 C 0.471 3.529 8 O -0.505 6.505 9 O -0.325 6.325 10 C 0.051 3.949 11 C 0.498 3.502 12 O -0.508 6.508 13 N -0.644 5.644 14 C -0.001 4.001 15 C -0.118 4.118 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.205 4.205 27 C -0.084 4.084 28 C 0.061 3.939 29 O -0.365 6.365 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.398 0.602 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 3.890 -5.726 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.183 4.183 5 C -0.136 4.136 6 H 0.144 0.856 7 C 0.313 3.687 8 O -0.393 6.393 9 O -0.239 6.239 10 C -0.027 4.027 11 C 0.283 3.717 12 O -0.383 6.383 13 N -0.289 5.289 14 C -0.093 4.093 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.437 5.437 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.225 4.225 27 C -0.104 4.104 28 C -0.017 4.017 29 O -0.285 6.285 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.996 3.751 -5.018 21.911 hybrid contribution 0.941 0.289 -0.290 1.026 sum -20.055 4.040 -5.308 21.135 Atomic orbital electron populations 1.21801 0.92705 1.03103 1.02724 1.23070 0.95752 0.95719 0.84517 0.90969 1.23146 0.94989 1.00534 0.99618 1.22452 0.90098 1.04154 0.96929 0.85625 1.23439 0.84915 0.78144 0.82154 1.90653 1.86866 1.33081 1.28724 1.86571 1.14583 1.65540 1.57228 1.22780 0.83279 1.00356 0.96276 1.19908 0.84197 0.83437 0.84181 1.90743 1.86074 1.33990 1.27467 1.42776 1.04540 1.51311 1.30285 1.17219 0.85145 0.95228 1.11685 1.20309 0.93344 0.97251 1.02875 1.21198 0.97294 0.98352 0.99317 1.17749 0.92022 0.91854 0.88537 1.19518 1.03145 0.95655 1.30685 0.90522 1.25897 0.98514 0.94547 0.95646 1.69755 1.35310 1.03369 1.35305 0.86178 0.80744 0.79866 0.79099 1.19492 1.20270 1.18684 1.20811 0.92791 1.01141 1.07791 1.20405 0.97706 0.93361 0.98910 1.23329 0.85045 1.01373 0.91911 1.89194 1.26499 1.74535 1.38223 0.91606 0.90937 0.91601 0.87953 0.89264 0.88268 0.88165 0.76853 0.88967 0.84948 0.91068 0.88474 0.87431 0.87036 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.53 37.16 0.35 -0.51 16 2 C 0.07 0.52 3.92 -25.95 -0.10 0.42 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.09 6.22 -25.16 -0.16 -1.25 16 5 C -0.12 -1.02 3.63 -90.20 -0.33 -1.34 16 6 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.47 5.33 7.14 36.01 0.26 5.59 16 8 O -0.51 -6.45 15.04 -18.75 -0.28 -6.73 16 9 O -0.32 -4.29 9.73 -45.90 -0.45 -4.74 16 10 C 0.05 0.62 5.95 36.01 0.21 0.84 16 11 C 0.50 8.34 7.74 -10.98 -0.09 8.25 16 12 O -0.51 -10.78 13.92 -14.11 -0.20 -10.98 16 13 N -0.64 -10.69 5.30 -9.74 -0.05 -10.74 16 14 C 0.00 -0.02 6.31 -83.57 -0.53 -0.55 16 15 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 16 C -0.14 -3.57 8.62 -39.26 -0.34 -3.91 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.10 9.02 -37.85 -0.34 -12.44 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.52 16 20 C 0.07 1.73 5.42 -17.33 -0.09 1.64 16 21 N -0.81 -20.80 10.60 55.55 0.59 -20.22 16 22 Si 0.92 18.78 29.56 -169.99 -5.03 13.76 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.21 -5.12 9.74 -39.26 -0.38 -5.51 16 27 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 28 C 0.06 0.55 7.16 37.93 0.27 0.83 16 29 O -0.37 -3.65 11.34 -35.23 -0.40 -4.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.10 0.85 6.51 -51.93 -0.34 0.51 16 34 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 37 H 0.40 4.93 8.82 -40.82 -0.36 4.57 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.45 6.13 -52.49 -0.32 3.12 16 40 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 41 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 42 H 0.11 2.49 6.22 -52.49 -0.33 2.17 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -31.88 372.04 -8.73 -40.60 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.94 Total: 8.65 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.59 Total: -11.17 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.54 Total: -30.96 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.32 Total: -26.49 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.88 -8.73 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784283598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.201 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds