Wall clock time and date at job start Tue Mar 31 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.32734 * 2 1 4 4 C 1.54481 * 110.46572 * 237.69349 * 2 1 3 5 5 C 1.54513 * 104.05951 * 217.14181 * 4 2 1 6 6 H 1.09000 * 110.63011 * 118.70149 * 5 4 2 7 7 C 1.50704 * 110.50785 * 241.35322 * 5 4 2 8 8 O 1.20823 * 120.00312 * 356.09332 * 7 5 4 9 9 O 1.34229 * 119.99923 * 176.09577 * 7 5 4 10 10 C 1.45205 * 116.99779 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46784 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99964 * 180.02562 * 11 10 9 14 14 C 1.39233 * 120.00287 * 175.71365 * 13 11 10 15 15 C 1.39484 * 119.83542 * 215.01937 * 14 13 11 16 16 C 1.36376 * 120.16698 * 179.75734 * 15 14 13 17 17 C 1.40873 * 119.82969 * 0.51415 * 16 15 14 18 18 C 1.41145 * 120.16223 * 179.71875 * 17 16 15 19 19 H 1.08003 * 120.00120 * 214.80179 * 18 17 16 20 20 C 1.39909 * 120.00527 * 34.80263 * 18 17 16 21 21 N 1.30875 * 119.99469 * 355.55967 * 20 18 17 22 22 Si 1.86796 * 120.00579 * 175.55702 * 20 18 17 23 23 H 1.48499 * 109.46899 * 89.99736 * 22 20 18 24 24 H 1.48500 * 109.47388 * 210.00123 * 22 20 18 25 25 H 1.48503 * 109.47001 * 330.00098 * 22 20 18 26 26 C 1.40868 * 119.67128 * 359.73710 * 17 16 15 27 27 C 1.36377 * 119.83020 * 0.02562 * 26 17 16 28 28 C 1.54477 * 104.06576 * 359.97438 * 5 4 2 29 29 O 1.44419 * 110.37581 * 122.25586 * 2 1 3 30 30 H 1.08998 * 109.47366 * 299.19743 * 1 2 3 31 31 H 1.08998 * 109.47344 * 59.20366 * 1 2 3 32 32 H 1.09006 * 109.46675 * 179.20170 * 1 2 3 33 33 H 1.08998 * 110.51550 * 98.49152 * 4 2 1 34 34 H 1.09002 * 110.51110 * 335.78205 * 4 2 1 35 35 H 1.08993 * 109.47256 * 299.99809 * 10 9 7 36 36 H 1.09001 * 109.46713 * 60.00444 * 10 9 7 37 37 H 0.96999 * 119.99813 * 355.71308 * 13 11 10 38 38 H 1.07997 * 119.91407 * 0.02562 * 15 14 13 39 39 H 1.07996 * 120.08139 * 180.25003 * 16 15 14 40 40 H 0.96998 * 120.00175 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.08571 * 179.97438 * 26 17 16 42 42 H 1.07994 * 119.91541 * 180.02562 * 27 26 17 43 43 H 1.08994 * 110.37466 * 142.80901 * 28 5 4 44 44 H 1.08993 * 110.37399 * 265.15642 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3208 -1.5031 -0.6837 6 1 3.2027 -2.5832 -0.7708 7 6 4.5556 -1.0473 -1.4177 8 8 4.4590 -0.2720 -2.3393 9 8 5.7628 -1.5027 -1.0475 10 6 6.9079 -1.0215 -1.7996 11 6 8.1673 -1.6355 -1.2446 12 8 8.1058 -2.4034 -0.3078 13 7 9.3620 -1.3313 -1.7893 14 6 10.5325 -1.8274 -1.2217 15 6 11.6908 -1.0503 -1.2291 16 6 12.8398 -1.5275 -0.6706 17 6 12.8577 -2.8131 -0.0948 18 6 14.0446 -3.3163 0.4799 19 1 14.2741 -4.3694 0.4101 20 6 14.9239 -2.4511 1.1400 21 7 14.6904 -1.1634 1.1499 22 14 16.4309 -3.1337 2.0073 23 1 17.5732 -3.1709 1.0591 24 1 16.7738 -2.2647 3.1616 25 1 16.1437 -4.5082 2.4905 26 6 11.6853 -3.5940 -0.0958 27 6 10.5426 -3.1014 -0.6538 28 6 3.3886 -1.0835 0.8014 29 8 2.0328 -0.7225 1.1449 30 1 -0.3634 0.5013 0.8971 31 1 -0.3634 0.5261 -0.8827 32 1 -0.3633 -1.0276 -0.0143 33 1 2.3449 -0.0833 -2.0208 34 1 1.3314 -1.4927 -1.5770 35 1 6.7980 -1.3012 -2.8473 36 1 6.9664 0.0638 -1.7174 37 1 9.4063 -0.7668 -2.5769 38 1 11.6766 -0.0666 -1.6744 39 1 13.7348 -0.9231 -0.6735 40 1 15.3001 -0.5634 1.6072 41 1 11.6916 -4.5807 0.3434 42 1 9.6429 -3.6987 -0.6550 43 1 3.7261 -1.9178 1.4164 44 1 4.0523 -0.2277 0.9240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784283598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:38 Heat of formation + Delta-G solvation = -161.440737 kcal Electronic energy + Delta-G solvation = -27225.213378 eV Core-core repulsion = 23106.777776 eV Total energy + Delta-G solvation = -4118.435602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.13923 -41.21346 -40.14602 -39.07518 -37.63707 -36.19609 -34.78275 -33.57318 -32.89073 -31.57588 -31.26355 -29.65372 -27.12345 -26.60849 -24.91328 -23.47864 -22.74243 -22.46338 -21.41727 -21.26993 -19.33898 -19.20153 -18.84002 -17.98837 -17.72612 -17.66129 -17.00224 -16.75440 -16.62952 -16.14085 -16.04538 -15.70787 -15.27102 -14.95802 -14.55211 -14.37144 -14.11812 -13.98999 -13.90092 -13.60805 -13.45012 -13.25975 -13.19342 -13.00099 -12.87935 -12.79350 -12.50237 -12.47209 -12.01125 -11.98484 -11.88115 -11.80474 -11.58729 -11.41345 -11.24307 -10.88979 -10.87412 -10.65583 -9.48508 -8.77491 -8.52028 -6.34860 0.73005 0.92837 1.11164 1.12748 1.39703 1.41011 1.52813 1.66994 2.23390 2.32849 2.78617 2.84502 3.21891 3.51532 3.60100 3.64103 3.68968 3.88016 3.97743 4.01598 4.10721 4.13649 4.38470 4.40331 4.50840 4.57084 4.66702 4.80969 4.87001 4.90461 4.91473 5.06641 5.09515 5.12316 5.17348 5.28056 5.30537 5.40233 5.68056 5.75064 5.87097 5.98634 6.11303 6.37043 6.44623 6.60979 6.66887 6.95380 6.97213 7.24976 8.40637 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.001853 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.808135 B =15107.035831 C =15528.079040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 H 0.070 0.930 4 C -0.139 4.139 5 C -0.115 4.115 6 H 0.144 0.856 7 C 0.475 3.525 8 O -0.519 6.519 9 O -0.344 6.344 10 C 0.058 3.942 11 C 0.500 3.500 12 O -0.556 6.556 13 N -0.635 5.635 14 C 0.018 3.982 15 C -0.115 4.115 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.073 0.927 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.263 1.263 26 C -0.221 4.221 27 C -0.096 4.096 28 C 0.059 3.941 29 O -0.382 6.382 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.422 0.578 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.365 4.737 -6.740 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.088 0.912 4 C -0.176 4.176 5 C -0.134 4.134 6 H 0.162 0.838 7 C 0.319 3.681 8 O -0.408 6.408 9 O -0.259 6.259 10 C -0.018 4.018 11 C 0.287 3.713 12 O -0.433 6.433 13 N -0.282 5.282 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.179 4.179 17 C 0.065 3.935 18 C -0.528 4.528 19 H 0.091 0.909 20 C -0.184 4.184 21 N -0.468 5.468 22 Si 0.809 3.191 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.241 4.241 27 C -0.116 4.116 28 C -0.019 4.019 29 O -0.302 6.302 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.260 0.740 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.471 4.629 -6.082 23.735 hybrid contribution 1.204 0.081 -0.044 1.207 sum -21.267 4.710 -6.126 22.628 Atomic orbital electron populations 1.21816 0.91233 1.03547 1.03449 1.23247 0.96972 0.95454 0.84044 0.91244 1.23141 0.94747 1.00642 0.99078 1.22574 0.89277 1.05334 0.96196 0.83845 1.23832 0.84721 0.77589 0.81945 1.90647 1.86924 1.33726 1.29485 1.86568 1.15342 1.66123 1.57858 1.22753 0.80906 1.01108 0.97053 1.20667 0.85269 0.82185 0.83167 1.90732 1.86854 1.36114 1.29649 1.42645 1.03213 1.51331 1.31011 1.17256 0.86669 0.94158 1.09477 1.20571 0.92421 0.98586 1.01903 1.21184 0.98139 0.98123 1.00503 1.18065 0.92709 0.92973 0.89733 1.19739 1.04445 0.95935 1.32643 0.90900 1.26735 1.01175 0.94703 0.95799 1.69816 1.36531 1.04386 1.36028 0.85107 0.76951 0.78967 0.78081 1.18366 1.19430 1.18718 1.20930 0.93256 1.01322 1.08569 1.20532 0.97119 0.94515 0.99445 1.23337 0.84820 1.01259 0.92439 1.89184 1.26727 1.74866 1.39389 0.91878 0.89219 0.91311 0.88586 0.87368 0.85245 0.85693 0.73970 0.85410 0.86250 0.90425 0.88582 0.87317 0.86672 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.53 71.98 0.69 -0.74 16 2 C 0.06 0.85 3.92 31.10 0.12 0.97 16 3 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 4 C -0.14 -1.78 6.22 31.61 0.20 -1.58 16 5 C -0.11 -1.77 3.63 -10.52 -0.04 -1.81 16 6 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 7 C 0.48 9.76 7.14 71.24 0.51 10.27 16 8 O -0.52 -11.96 15.04 21.97 0.33 -11.63 16 9 O -0.34 -8.38 9.73 -45.05 -0.44 -8.82 16 10 C 0.06 1.26 5.95 71.24 0.42 1.68 16 11 C 0.50 15.74 7.74 87.66 0.68 16.42 16 12 O -0.56 -23.25 13.92 15.76 0.22 -23.03 16 13 N -0.64 -19.52 5.30 -303.10 -1.61 -21.13 16 14 C 0.02 0.74 6.31 38.57 0.24 0.98 16 15 C -0.11 -4.97 9.90 22.14 0.22 -4.75 16 16 C -0.16 -8.18 8.62 22.48 0.19 -7.98 16 17 C 0.07 3.70 5.55 -21.28 -0.12 3.58 16 18 C -0.50 -27.17 9.02 23.39 0.21 -26.96 16 19 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 20 C 0.03 1.42 5.42 85.24 0.46 1.89 16 21 N -0.84 -43.97 10.60 21.82 0.23 -43.74 16 22 Si 0.99 38.92 29.56 68.60 2.03 40.95 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 C -0.22 -11.40 9.74 22.48 0.22 -11.18 16 27 C -0.10 -4.56 8.61 22.14 0.19 -4.37 16 28 C 0.06 1.02 7.16 72.48 0.52 1.53 16 29 O -0.38 -7.23 11.34 -148.98 -1.69 -8.92 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.65 8.13 -2.38 -0.02 0.63 16 33 H 0.10 1.40 6.51 -2.39 -0.02 1.38 16 34 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 35 H 0.13 2.08 8.13 -2.39 -0.02 2.06 16 36 H 0.13 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.42 8.94 8.82 -92.71 -0.82 8.12 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.12 6.38 6.13 -2.91 -0.02 6.37 16 40 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 41 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.11 5.10 6.22 -2.91 -0.02 5.08 16 43 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.11 7.86 -2.39 -0.02 1.09 16 Total: -1.00 -70.99 372.04 4.01 -66.99 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.22 Total: 31.39 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.72 Total: -22.04 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -1.38 Total: -64.87 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.58 Total: -52.41 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -70.99 4.01 -66.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784283598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.455 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds