Wall clock time and date at job start Tue Mar 31 2020 17:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.28063 * 2 1 4 4 C 1.54952 * 110.31178 * 122.09273 * 2 1 3 5 5 C 1.55302 * 100.94269 * 155.35837 * 4 2 1 6 6 H 1.09002 * 110.84946 * 84.25978 * 5 4 2 7 7 C 1.50701 * 110.84903 * 207.67958 * 5 4 2 8 8 O 1.20832 * 119.99577 * 357.22564 * 7 5 4 9 9 O 1.34220 * 120.00149 * 177.23228 * 7 5 4 10 10 C 1.45200 * 117.00048 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47377 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99930 * 179.97438 * 11 10 9 14 14 C 1.39238 * 119.99549 * 185.35776 * 13 11 10 15 15 C 1.39480 * 119.83230 * 213.28251 * 14 13 11 16 16 C 1.36377 * 120.17040 * 180.02562 * 15 14 13 17 17 C 1.40869 * 119.82609 * 0.02562 * 16 15 14 18 18 C 1.41149 * 120.16408 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99915 * 336.04732 * 18 17 16 20 20 C 1.39904 * 120.00358 * 155.78031 * 18 17 16 21 21 N 1.30880 * 119.99705 * 341.56584 * 20 18 17 22 22 Si 1.86801 * 120.00537 * 161.57205 * 20 18 17 23 23 H 1.48503 * 109.46857 * 94.72093 * 22 20 18 24 24 H 1.48494 * 109.47252 * 214.72472 * 22 20 18 25 25 H 1.48502 * 109.46712 * 334.72573 * 22 20 18 26 26 C 1.40868 * 119.67336 * 0.27481 * 17 16 15 27 27 C 1.36372 * 119.82731 * 359.41993 * 26 17 16 28 28 C 1.54381 * 102.43709 * 325.96718 * 5 4 2 29 29 O 1.43592 * 107.40970 * 21.10805 * 28 5 4 30 30 H 1.09004 * 109.46897 * 297.90753 * 1 2 3 31 31 H 1.09004 * 109.47126 * 57.90681 * 1 2 3 32 32 H 1.08995 * 109.47170 * 177.91223 * 1 2 3 33 33 H 1.08999 * 111.12423 * 37.43747 * 4 2 1 34 34 H 1.09001 * 111.15996 * 273.29538 * 4 2 1 35 35 H 1.09003 * 109.47257 * 59.99496 * 10 9 7 36 36 H 1.09001 * 109.47341 * 299.99545 * 10 9 7 37 37 H 0.96994 * 120.00540 * 5.36443 * 13 11 10 38 38 H 1.07997 * 119.91510 * 0.02562 * 15 14 13 39 39 H 1.07996 * 120.08792 * 179.97438 * 16 15 14 40 40 H 0.97000 * 119.99724 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.08658 * 179.72686 * 26 17 16 42 42 H 1.08001 * 119.91992 * 180.31824 * 27 26 17 43 43 H 1.09004 * 109.83299 * 140.77108 * 28 5 4 44 44 H 1.09000 * 109.83029 * 261.74260 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0679 -0.7721 1.2311 5 6 3.4699 -1.2019 0.7200 6 1 4.1983 -0.4047 0.8686 7 6 3.9216 -2.4706 1.3964 8 8 3.2339 -2.9774 2.2509 9 8 5.0877 -3.0376 1.0496 10 6 5.4595 -4.2578 1.7431 11 6 6.7879 -4.7455 1.2249 12 8 7.3648 -4.1254 0.3569 13 7 7.3353 -5.8702 1.7268 14 6 8.6115 -6.2604 1.3297 15 6 8.9242 -7.6164 1.2341 16 6 10.1722 -8.0063 0.8464 17 6 11.1467 -7.0355 0.5425 18 6 12.4405 -7.4311 0.1399 19 1 12.8197 -8.4028 0.4201 20 6 13.2295 -6.5668 -0.6267 21 7 12.6741 -5.5722 -1.2711 22 14 15.0756 -6.8323 -0.7307 23 1 15.3931 -7.6329 -1.9404 24 1 15.7609 -5.5175 -0.8133 25 1 15.5402 -7.5576 0.4790 26 6 10.8253 -5.6680 0.6475 27 6 9.5713 -5.2935 1.0305 28 6 3.2166 -1.4414 -0.7839 29 8 2.0285 -0.7178 -1.1400 30 1 -0.3633 0.4810 0.9082 31 1 -0.3633 0.5460 -0.8707 32 1 -0.3633 -1.0269 -0.0374 33 1 1.4471 -1.6403 1.4523 34 1 2.1496 -0.1191 2.1001 35 1 4.7001 -5.0202 1.5695 36 1 5.5370 -4.0591 2.8121 37 1 6.8403 -6.4078 2.3645 38 1 8.1761 -8.3594 1.4678 39 1 10.4130 -9.0565 0.7732 40 1 13.2211 -4.9732 -1.8029 41 1 11.5687 -4.9182 0.4204 42 1 9.3217 -4.2454 1.1065 43 1 4.0641 -1.0768 -1.3644 44 1 3.0702 -2.5055 -0.9694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784283599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:43 Heat of formation + Delta-G solvation = -144.369369 kcal Electronic energy + Delta-G solvation = -27259.326010 eV Core-core repulsion = 23141.630678 eV Total energy + Delta-G solvation = -4117.695332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17788 -39.83548 -39.24140 -37.38136 -36.54200 -34.52809 -33.06749 -32.90153 -32.31577 -29.92783 -29.46682 -28.29244 -26.53218 -24.98259 -24.00257 -21.69181 -21.60810 -21.15110 -20.67239 -19.67942 -18.10724 -17.62420 -17.45505 -17.33097 -16.58316 -16.45201 -16.04015 -15.58288 -15.23907 -14.91476 -14.62721 -14.22417 -14.00838 -13.87696 -13.38719 -13.12603 -12.91475 -12.78076 -12.69163 -12.61763 -12.33856 -12.11003 -11.89839 -11.74756 -11.55606 -11.52016 -11.36115 -11.16125 -11.02559 -10.94878 -10.84589 -10.56263 -10.03003 -9.91062 -9.90180 -9.52985 -9.22233 -8.75190 -7.58054 -7.08328 -6.79288 -4.33344 1.80862 2.07467 2.46501 2.91815 3.04402 3.06281 3.10409 3.27509 3.31914 3.60937 3.78808 3.90091 4.30400 4.37613 4.51882 4.58211 4.63000 4.72847 4.81706 4.93639 4.95486 4.96948 5.20389 5.24315 5.30604 5.44169 5.50717 5.66066 5.66431 5.77956 6.04404 6.10055 6.32942 6.56908 6.70370 6.90219 6.98939 7.09406 7.22675 7.36592 7.53739 7.60780 7.88456 8.00545 8.12108 8.24420 8.56677 8.63965 8.83623 8.94396 10.13499 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001943 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.497746 B =14408.033411 C =15218.138699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 H 0.077 0.923 4 C -0.136 4.136 5 C -0.119 4.119 6 H 0.127 0.873 7 C 0.474 3.526 8 O -0.504 6.504 9 O -0.325 6.325 10 C 0.051 3.949 11 C 0.496 3.504 12 O -0.505 6.505 13 N -0.644 5.644 14 C -0.012 4.012 15 C -0.100 4.100 16 C -0.217 4.217 17 C 0.107 3.893 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.074 3.926 21 N -0.784 5.784 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.158 4.158 27 C -0.084 4.084 28 C 0.067 3.933 29 O -0.375 6.375 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.282 0.718 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 9.190 5.357 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.094 0.906 4 C -0.173 4.173 5 C -0.139 4.139 6 H 0.145 0.855 7 C 0.316 3.684 8 O -0.392 6.392 9 O -0.240 6.240 10 C -0.026 4.026 11 C 0.280 3.720 12 O -0.379 6.379 13 N -0.289 5.289 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.237 4.237 17 C 0.104 3.896 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.145 4.145 21 N -0.409 5.409 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.178 4.178 27 C -0.104 4.104 28 C -0.010 4.010 29 O -0.295 6.295 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.204 9.687 4.618 21.132 hybrid contribution 0.679 -0.520 0.527 1.004 sum -17.526 9.167 5.145 20.436 Atomic orbital electron populations 1.21887 0.93214 1.03181 1.02596 1.23014 0.95392 0.95629 0.84173 0.90561 1.23356 0.93192 1.01947 0.98833 1.22636 0.99986 0.94136 0.97096 0.85546 1.23267 0.78796 0.85549 0.80753 1.90677 1.54608 1.62992 1.30902 1.86574 1.37701 1.38754 1.60925 1.22777 0.96629 0.85712 0.97515 1.19884 0.86076 0.82689 0.83337 1.90776 1.62171 1.55739 1.29228 1.42766 1.16884 1.24724 1.44547 1.17106 0.83637 0.92994 1.16662 1.20033 0.96974 0.92512 1.02465 1.20537 0.93400 0.97893 1.11839 1.17679 0.92274 0.91413 0.88205 1.19568 0.98648 1.02041 1.28342 0.90270 1.25969 1.01127 0.94034 0.93340 1.69869 1.37827 1.13072 1.20091 0.86304 0.82005 0.78812 0.79661 1.19532 1.19975 1.18358 1.20971 0.95640 0.96614 1.04530 1.20410 0.92852 0.97210 0.99886 1.23091 0.88755 0.97810 0.91313 1.88523 1.42088 1.65005 1.33906 0.90993 0.91611 0.91694 0.88597 0.88868 0.88327 0.88214 0.77035 0.89106 0.88542 0.90664 0.86219 0.88028 0.89189 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.62 37.16 0.36 -0.57 16 2 C 0.08 0.56 4.07 -25.70 -0.10 0.45 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.14 -1.02 5.68 -24.48 -0.14 -1.15 16 5 C -0.12 -1.05 3.49 -89.83 -0.31 -1.37 16 6 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.47 5.55 7.12 36.01 0.26 5.80 16 8 O -0.50 -6.63 15.47 -18.75 -0.29 -6.92 16 9 O -0.32 -4.46 9.75 -45.88 -0.45 -4.90 16 10 C 0.05 0.65 5.95 36.01 0.21 0.86 16 11 C 0.50 8.58 7.63 -10.98 -0.08 8.50 16 12 O -0.50 -11.22 14.15 -14.10 -0.20 -11.42 16 13 N -0.64 -10.90 5.31 -9.74 -0.05 -10.95 16 14 C -0.01 -0.27 6.29 -83.57 -0.53 -0.79 16 15 C -0.10 -2.14 9.89 -39.79 -0.39 -2.53 16 16 C -0.22 -5.16 9.74 -39.26 -0.38 -5.55 16 17 C 0.11 2.83 5.57 -106.80 -0.60 2.24 16 18 C -0.46 -11.96 9.03 -37.85 -0.34 -12.30 16 19 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 20 C 0.07 1.85 5.12 -17.33 -0.09 1.76 16 21 N -0.78 -20.46 10.98 55.55 0.61 -19.85 16 22 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.16 -4.17 8.64 -39.26 -0.34 -4.51 16 27 C -0.08 -2.06 8.58 -39.79 -0.34 -2.40 16 28 C 0.07 0.64 7.42 37.88 0.28 0.92 16 29 O -0.38 -3.83 11.05 -35.23 -0.39 -4.22 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.83 7.33 -51.93 -0.38 0.45 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 36 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 37 H 0.40 4.96 8.81 -40.82 -0.36 4.60 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 41 H 0.12 3.28 6.17 -52.48 -0.32 2.96 16 42 H 0.10 2.50 6.39 -52.49 -0.34 2.16 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.77 7.81 -51.93 -0.41 0.37 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -32.52 373.59 -8.71 -41.23 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.00 Total: 8.63 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.54 Total: -10.63 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.56 Total: -30.79 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.33 Total: -27.47 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.52 -8.71 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784283599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.135 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds