Wall clock time and date at job start Tue Mar 31 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.28063 * 2 1 4 4 C 1.54952 * 110.31178 * 122.09273 * 2 1 3 5 5 C 1.55302 * 100.94269 * 155.35837 * 4 2 1 6 6 H 1.09002 * 110.84946 * 84.25978 * 5 4 2 7 7 C 1.50701 * 110.84903 * 207.67958 * 5 4 2 8 8 O 1.20832 * 119.99577 * 357.22564 * 7 5 4 9 9 O 1.34220 * 120.00149 * 177.23228 * 7 5 4 10 10 C 1.45200 * 117.00048 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47377 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99930 * 179.97438 * 11 10 9 14 14 C 1.39238 * 119.99549 * 185.35776 * 13 11 10 15 15 C 1.39480 * 119.83230 * 213.28251 * 14 13 11 16 16 C 1.36377 * 120.17040 * 180.02562 * 15 14 13 17 17 C 1.40869 * 119.82609 * 0.02562 * 16 15 14 18 18 C 1.41149 * 120.16408 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99915 * 336.04732 * 18 17 16 20 20 C 1.39904 * 120.00358 * 155.78031 * 18 17 16 21 21 N 1.30880 * 119.99705 * 341.56584 * 20 18 17 22 22 Si 1.86801 * 120.00537 * 161.57205 * 20 18 17 23 23 H 1.48503 * 109.46857 * 94.72093 * 22 20 18 24 24 H 1.48494 * 109.47252 * 214.72472 * 22 20 18 25 25 H 1.48502 * 109.46712 * 334.72573 * 22 20 18 26 26 C 1.40868 * 119.67336 * 0.27481 * 17 16 15 27 27 C 1.36372 * 119.82731 * 359.41993 * 26 17 16 28 28 C 1.54381 * 102.43709 * 325.96718 * 5 4 2 29 29 O 1.43592 * 107.40970 * 21.10805 * 28 5 4 30 30 H 1.09004 * 109.46897 * 297.90753 * 1 2 3 31 31 H 1.09004 * 109.47126 * 57.90681 * 1 2 3 32 32 H 1.08995 * 109.47170 * 177.91223 * 1 2 3 33 33 H 1.08999 * 111.12423 * 37.43747 * 4 2 1 34 34 H 1.09001 * 111.15996 * 273.29538 * 4 2 1 35 35 H 1.09003 * 109.47257 * 59.99496 * 10 9 7 36 36 H 1.09001 * 109.47341 * 299.99545 * 10 9 7 37 37 H 0.96994 * 120.00540 * 5.36443 * 13 11 10 38 38 H 1.07997 * 119.91510 * 0.02562 * 15 14 13 39 39 H 1.07996 * 120.08792 * 179.97438 * 16 15 14 40 40 H 0.97000 * 119.99724 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.08658 * 179.72686 * 26 17 16 42 42 H 1.08001 * 119.91992 * 180.31824 * 27 26 17 43 43 H 1.09004 * 109.83299 * 140.77108 * 28 5 4 44 44 H 1.09000 * 109.83029 * 261.74260 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0679 -0.7721 1.2311 5 6 3.4699 -1.2019 0.7200 6 1 4.1983 -0.4047 0.8686 7 6 3.9216 -2.4706 1.3964 8 8 3.2339 -2.9774 2.2509 9 8 5.0877 -3.0376 1.0496 10 6 5.4595 -4.2578 1.7431 11 6 6.7879 -4.7455 1.2249 12 8 7.3648 -4.1254 0.3569 13 7 7.3353 -5.8702 1.7268 14 6 8.6115 -6.2604 1.3297 15 6 8.9242 -7.6164 1.2341 16 6 10.1722 -8.0063 0.8464 17 6 11.1467 -7.0355 0.5425 18 6 12.4405 -7.4311 0.1399 19 1 12.8197 -8.4028 0.4201 20 6 13.2295 -6.5668 -0.6267 21 7 12.6741 -5.5722 -1.2711 22 14 15.0756 -6.8323 -0.7307 23 1 15.3931 -7.6329 -1.9404 24 1 15.7609 -5.5175 -0.8133 25 1 15.5402 -7.5576 0.4790 26 6 10.8253 -5.6680 0.6475 27 6 9.5713 -5.2935 1.0305 28 6 3.2166 -1.4414 -0.7839 29 8 2.0285 -0.7178 -1.1400 30 1 -0.3633 0.4810 0.9082 31 1 -0.3633 0.5460 -0.8707 32 1 -0.3633 -1.0269 -0.0374 33 1 1.4471 -1.6403 1.4523 34 1 2.1496 -0.1191 2.1001 35 1 4.7001 -5.0202 1.5695 36 1 5.5370 -4.0591 2.8121 37 1 6.8403 -6.4078 2.3645 38 1 8.1761 -8.3594 1.4678 39 1 10.4130 -9.0565 0.7732 40 1 13.2211 -4.9732 -1.8029 41 1 11.5687 -4.9182 0.4204 42 1 9.3217 -4.2454 1.1065 43 1 4.0641 -1.0768 -1.3644 44 1 3.0702 -2.5055 -0.9694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784283599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:42 Heat of formation + Delta-G solvation = -163.961477 kcal Electronic energy + Delta-G solvation = -27260.175588 eV Core-core repulsion = 23141.630678 eV Total energy + Delta-G solvation = -4118.544910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.11159 -41.17886 -40.16464 -39.06677 -37.63267 -36.23589 -34.81030 -33.62768 -32.91664 -31.59548 -31.25110 -29.70077 -27.18335 -26.63269 -24.96047 -23.35947 -22.88954 -22.23855 -21.55589 -21.26391 -19.28840 -18.98005 -18.89045 -18.30768 -17.69473 -17.50068 -17.36097 -16.99214 -16.34450 -16.14070 -15.76546 -15.56850 -15.22939 -14.91551 -14.76372 -14.49676 -14.19898 -13.93559 -13.86351 -13.71481 -13.43555 -13.39925 -13.34597 -12.93445 -12.79849 -12.72275 -12.39906 -12.32621 -12.17809 -11.98869 -11.91346 -11.79029 -11.74664 -11.69330 -11.25904 -10.90684 -10.58173 -10.51312 -9.47584 -8.91708 -8.64016 -6.27983 0.74576 0.90866 1.11847 1.13546 1.36956 1.40339 1.53790 1.69739 2.20002 2.33106 2.71676 2.74411 3.10197 3.51296 3.61356 3.68997 3.73184 3.88948 3.93977 4.00824 4.05046 4.16551 4.40669 4.42533 4.44459 4.59033 4.65175 4.75744 4.84374 4.91481 4.94568 5.06835 5.11447 5.14415 5.16192 5.27731 5.30316 5.39669 5.65763 5.82938 5.93301 6.04428 6.08433 6.31364 6.43893 6.62965 6.66817 6.90869 6.98319 7.29114 8.31007 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001943 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.497746 B =14408.033411 C =15218.138699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 H 0.093 0.907 4 C -0.129 4.129 5 C -0.117 4.117 6 H 0.147 0.853 7 C 0.478 3.522 8 O -0.518 6.518 9 O -0.346 6.346 10 C 0.059 3.941 11 C 0.497 3.503 12 O -0.559 6.559 13 N -0.633 5.633 14 C 0.002 3.998 15 C -0.094 4.094 16 C -0.225 4.225 17 C 0.074 3.926 18 C -0.493 4.493 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.825 5.825 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.254 1.254 26 C -0.183 4.183 27 C -0.098 4.098 28 C 0.066 3.934 29 O -0.396 6.396 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.422 0.578 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.288 0.712 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.989 8.953 6.715 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.111 0.889 4 C -0.167 4.167 5 C -0.136 4.136 6 H 0.165 0.835 7 C 0.321 3.679 8 O -0.407 6.407 9 O -0.261 6.261 10 C -0.017 4.017 11 C 0.284 3.716 12 O -0.437 6.437 13 N -0.280 5.280 14 C -0.091 4.091 15 C -0.114 4.114 16 C -0.245 4.245 17 C 0.071 3.929 18 C -0.522 4.522 19 H 0.101 0.899 20 C -0.185 4.185 21 N -0.451 5.451 22 Si 0.805 3.195 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.178 1.178 26 C -0.203 4.203 27 C -0.118 4.118 28 C -0.011 4.011 29 O -0.316 6.316 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.858 9.426 6.017 22.791 hybrid contribution 0.959 -0.417 0.148 1.056 sum -18.899 9.009 6.165 21.825 Atomic orbital electron populations 1.21911 0.92365 1.02828 1.03671 1.23253 0.96150 0.96082 0.83223 0.88907 1.23361 0.91871 1.01836 0.99596 1.22766 1.01238 0.93298 0.96289 0.83541 1.23704 0.77852 0.85839 0.80460 1.90668 1.54772 1.63520 1.31705 1.86575 1.38802 1.39193 1.61559 1.22756 0.94155 0.86420 0.98395 1.20692 0.87194 0.81628 0.82119 1.90767 1.64049 1.57160 1.31720 1.42621 1.15306 1.25183 1.44916 1.17174 0.84949 0.92772 1.14201 1.20412 0.97045 0.93208 1.00761 1.20825 0.93924 0.98224 1.11492 1.18031 0.93539 0.91876 0.89447 1.19850 0.99588 1.02937 1.29782 0.89866 1.26885 1.05915 0.93356 0.92310 1.69947 1.39762 1.14283 1.21121 0.85159 0.75559 0.78896 0.79899 1.18623 1.19388 1.17760 1.20873 0.96198 0.96620 1.06626 1.20460 0.93132 0.97573 1.00650 1.23058 0.88801 0.97238 0.91976 1.88507 1.42289 1.65395 1.35459 0.88948 0.91607 0.92674 0.89826 0.86735 0.85453 0.85396 0.73945 0.84512 0.87068 0.90171 0.88560 0.88917 0.89002 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.62 71.98 0.69 -0.90 16 2 C 0.07 0.90 4.07 31.26 0.13 1.03 16 3 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.13 -1.66 5.68 32.05 0.18 -1.48 16 5 C -0.12 -1.87 3.49 -10.28 -0.04 -1.90 16 6 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 7 C 0.48 10.32 7.12 71.24 0.51 10.83 16 8 O -0.52 -12.47 15.47 21.95 0.34 -12.13 16 9 O -0.35 -8.96 9.75 -44.97 -0.44 -9.40 16 10 C 0.06 1.35 5.95 71.24 0.42 1.78 16 11 C 0.50 16.47 7.63 87.66 0.67 17.14 16 12 O -0.56 -25.07 14.15 15.78 0.22 -24.85 16 13 N -0.63 -19.92 5.31 -303.11 -1.61 -21.53 16 14 C 0.00 0.09 6.29 38.57 0.24 0.33 16 15 C -0.09 -3.86 9.89 22.13 0.22 -3.64 16 16 C -0.22 -10.62 9.74 22.48 0.22 -10.40 16 17 C 0.07 4.02 5.57 -21.28 -0.12 3.90 16 18 C -0.49 -26.60 9.03 23.39 0.21 -26.38 16 19 H 0.08 4.23 7.91 -2.91 -0.02 4.21 16 20 C 0.03 1.56 5.12 85.24 0.44 1.99 16 21 N -0.83 -45.04 10.98 21.82 0.24 -44.80 16 22 Si 0.98 38.53 29.60 68.60 2.03 40.56 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.18 -10.17 8.64 22.48 0.19 -9.98 16 27 C -0.10 -4.96 8.58 22.13 0.19 -4.77 16 28 C 0.07 1.22 7.42 72.45 0.54 1.76 16 29 O -0.40 -7.76 11.05 -148.98 -1.65 -9.40 16 30 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.31 7.33 -2.39 -0.02 1.29 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 2.22 8.13 -2.39 -0.02 2.20 16 36 H 0.13 2.25 8.13 -2.39 -0.02 2.23 16 37 H 0.42 8.93 8.81 -92.71 -0.82 8.12 16 38 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 41 H 0.10 5.68 6.17 -2.91 -0.02 5.66 16 42 H 0.09 4.77 6.39 -2.91 -0.02 4.75 16 43 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.32 7.81 -2.39 -0.02 1.30 16 Total: -1.00 -74.34 373.59 4.05 -70.28 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.22 Total: 31.96 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.70 Total: -20.69 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.37 Total: -66.33 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.52 Total: -55.78 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -74.34 4.05 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784283599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.679 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds