Wall clock time and date at job start Tue Mar 31 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46706 * 2 1 4 4 O 1.45198 * 109.46798 * 239.99646 * 2 1 3 5 5 C 1.34234 * 116.99649 * 90.00335 * 4 2 1 6 6 O 1.20822 * 119.99969 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99719 * 179.97438 * 5 4 2 8 8 H 1.08998 * 110.83556 * 300.69840 * 7 5 4 9 9 C 1.54709 * 110.94205 * 64.42233 * 7 5 4 10 10 O 1.43759 * 102.79638 * 92.79124 * 9 7 5 11 11 C 1.36135 * 109.28829 * 27.54997 * 10 9 7 12 12 C 1.39293 * 129.87783 * 161.43378 * 11 10 9 13 13 C 1.37929 * 120.24109 * 179.57223 * 12 11 10 14 14 C 1.38289 * 120.35242 * 0.02562 * 13 12 11 15 15 C 1.38348 * 119.76453 * 0.20192 * 14 13 12 16 16 C 1.37668 * 120.00590 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46805 * 119.99774 * 2 1 3 18 18 O 1.21282 * 119.99934 * 106.66124 * 17 2 1 19 19 N 1.34771 * 120.00465 * 286.65399 * 17 2 1 20 20 C 1.46506 * 119.99383 * 5.12582 * 19 17 2 21 21 C 1.46492 * 120.00345 * 185.12386 * 19 17 2 22 22 C 1.50698 * 109.47321 * 269.99857 * 21 19 17 23 23 H 1.08002 * 120.00043 * 0.02562 * 22 21 19 24 24 C 1.37875 * 120.00386 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99790 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00327 * 179.72916 * 24 22 21 27 27 H 1.48509 * 109.47059 * 270.28139 * 26 24 22 28 28 H 1.48504 * 109.47140 * 30.27757 * 26 24 22 29 29 H 1.48494 * 109.47446 * 150.27820 * 26 24 22 30 30 H 1.08994 * 109.46793 * 50.06970 * 1 2 3 31 31 H 1.09001 * 109.46864 * 170.06923 * 1 2 3 32 32 H 1.08999 * 109.46851 * 290.06686 * 1 2 3 33 33 H 1.09008 * 110.74921 * 211.11375 * 9 7 5 34 34 H 1.08994 * 110.74907 * 334.27908 * 9 7 5 35 35 H 1.07996 * 119.87835 * 359.59198 * 12 11 10 36 36 H 1.07995 * 119.82390 * 180.02562 * 13 12 11 37 37 H 1.08004 * 120.11566 * 180.21767 * 14 13 12 38 38 H 1.07995 * 120.00826 * 179.97438 * 15 14 13 39 39 H 1.08996 * 109.47176 * 265.07695 * 20 19 17 40 40 H 1.09001 * 109.47404 * 25.08145 * 20 19 17 41 41 H 1.09008 * 109.47038 * 145.08080 * 20 19 17 42 42 H 1.09006 * 109.47325 * 150.00280 * 21 19 17 43 43 H 1.09002 * 109.47214 * 30.00346 * 21 19 17 44 44 H 0.97000 * 120.00269 * 359.72044 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2516 -2.2506 7 6 2.7193 -0.5771 -3.5491 8 1 3.6834 -1.0584 -3.3848 9 6 1.6859 -1.5848 -4.1060 10 8 0.9229 -0.7839 -5.0241 11 6 1.7030 0.2282 -5.4936 12 6 1.5437 1.0288 -6.6223 13 6 2.4631 2.0161 -6.9091 14 6 3.5510 2.2201 -6.0800 15 6 3.7190 1.4261 -4.9596 16 6 2.8048 0.4376 -4.6728 17 6 2.0324 -0.7104 1.2305 18 8 2.5184 -1.8175 1.1357 19 7 1.9416 -0.1154 2.4364 20 6 1.2544 1.1717 2.5682 21 6 2.5301 -0.7557 3.6153 22 6 1.5074 -1.6539 4.2622 23 1 0.5181 -1.7395 3.8374 24 6 1.8349 -2.3671 5.3958 25 7 3.0397 -2.2632 5.9128 26 14 0.5649 -3.4745 6.2020 27 1 -0.2034 -2.6967 7.2072 28 1 -0.3627 -3.9988 5.1676 29 1 1.2508 -4.6082 6.8722 30 1 -0.3633 0.6596 -0.7880 31 1 -0.3633 -1.0123 -0.1772 32 1 -0.3633 0.3526 0.9653 33 1 2.1851 -2.4010 -4.6284 34 1 1.0527 -1.9700 -3.3068 35 1 0.6970 0.8760 -7.2750 36 1 2.3328 2.6331 -7.7858 37 1 4.2667 2.9966 -6.3064 38 1 4.5673 1.5817 -4.3096 39 1 1.9833 1.9801 2.5125 40 1 0.5289 1.2805 1.7620 41 1 0.7396 1.2121 3.5282 42 1 2.8432 0.0092 4.3260 43 1 3.3945 -1.3474 3.3140 44 1 3.6991 -1.6880 5.4943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785767796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:28 Heat of formation + Delta-G solvation = -109.040052 kcal Electronic energy + Delta-G solvation = -28551.448724 eV Core-core repulsion = 24435.285386 eV Total energy + Delta-G solvation = -4116.163338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89870 -40.44129 -39.00123 -37.73758 -36.54201 -35.08459 -33.46109 -33.07025 -31.64404 -30.41888 -29.72178 -27.45182 -26.25545 -25.15767 -24.11769 -23.23138 -22.63391 -22.18356 -20.70039 -19.15042 -18.43396 -17.49659 -17.05203 -17.01286 -16.92525 -16.46306 -15.93504 -15.82070 -15.54984 -15.00060 -14.76745 -14.34685 -13.94670 -13.78920 -13.73116 -13.44433 -13.28719 -13.01941 -12.92465 -12.62154 -12.37070 -12.31682 -12.12387 -12.01361 -11.73187 -11.55439 -11.48920 -11.24260 -11.17715 -10.97335 -10.82393 -10.61480 -10.59421 -10.13692 -9.29132 -9.19550 -9.05687 -8.52323 -8.42543 -7.74942 -6.42875 -4.15171 0.86429 1.06498 1.94310 2.29400 2.88164 3.10827 3.39786 3.40383 3.46169 3.61205 3.74309 3.78388 4.05873 4.43836 4.49824 4.50324 4.69026 4.73113 4.78385 4.87605 4.97169 4.99291 5.04661 5.11491 5.20187 5.27687 5.31983 5.33004 5.54444 5.61084 5.66563 5.75812 5.95993 5.96819 6.04531 6.14491 6.15560 6.23353 6.26665 6.69819 6.80958 7.01390 7.24641 7.55190 7.96770 8.10319 8.37154 8.70580 8.83021 9.54283 10.94659 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.002414 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.732699 B =11597.688015 C =11877.851149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.104 0.896 4 O -0.324 6.324 5 C 0.469 3.531 6 O -0.493 6.493 7 C -0.072 4.072 8 H 0.138 0.862 9 C 0.064 3.936 10 O -0.300 6.300 11 C 0.117 3.883 12 C -0.141 4.141 13 C -0.078 4.078 14 C -0.150 4.150 15 C -0.048 4.048 16 C -0.161 4.161 17 C 0.508 3.492 18 O -0.517 6.517 19 N -0.592 5.592 20 C 0.066 3.934 21 C 0.237 3.763 22 C -0.606 4.606 23 H 0.053 0.947 24 C 0.020 3.980 25 N -0.909 5.909 26 Si 1.075 2.925 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.283 1.283 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.034 0.966 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 8.964 -24.445 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.122 0.878 4 O -0.239 6.239 5 C 0.310 3.690 6 O -0.380 6.380 7 C -0.091 4.091 8 H 0.155 0.845 9 C -0.011 4.011 10 O -0.214 6.214 11 C 0.071 3.929 12 C -0.160 4.160 13 C -0.096 4.096 14 C -0.169 4.169 15 C -0.066 4.066 16 C -0.162 4.162 17 C 0.292 3.708 18 O -0.392 6.392 19 N -0.326 5.326 20 C -0.078 4.078 21 C 0.118 3.882 22 C -0.645 4.645 23 H 0.071 0.929 24 C -0.185 4.185 25 N -0.545 5.545 26 Si 0.903 3.097 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.208 1.208 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.167 7.618 -23.189 24.505 hybrid contribution 0.323 1.294 -0.959 1.643 sum -1.844 8.911 -24.149 25.807 Atomic orbital electron populations 1.22335 0.92127 1.04268 1.04223 1.22653 0.96061 0.97338 0.82529 0.87840 1.86600 1.76496 1.41377 1.19438 1.23196 0.74781 0.85963 0.85033 1.90663 1.46978 1.16339 1.83989 1.21147 1.03011 0.95929 0.89021 0.84467 1.23881 0.92554 0.92314 0.92344 1.86866 1.36268 1.39163 1.59090 1.19606 0.89563 0.90051 0.93642 1.20253 1.02116 0.97939 0.95678 1.20922 0.93360 0.96086 0.99192 1.21038 0.99266 1.00787 0.95769 1.20307 0.97617 0.92352 0.96321 1.20144 0.99109 1.01085 0.95866 1.19770 0.80729 0.86496 0.83760 1.90707 1.44404 1.18505 1.85591 1.47865 1.55402 1.21191 1.08101 1.22012 0.96945 0.85208 1.03593 1.19401 0.94879 0.92895 0.81025 1.22244 0.99577 1.29120 1.13540 0.92897 1.25832 0.99898 0.97833 0.94906 1.70781 1.04133 1.37973 1.41612 0.83457 0.74466 0.76229 0.75565 1.21403 1.21472 1.20824 0.91058 0.90481 0.88939 0.88307 0.86069 0.85216 0.84965 0.85212 0.85629 0.93285 0.91213 0.90306 0.95663 0.94845 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.09 37.16 0.34 -2.07 16 2 C 0.07 1.20 2.16 -27.88 -0.06 1.14 16 3 H 0.10 1.60 6.74 -51.93 -0.35 1.25 16 4 O -0.32 -5.26 9.35 -45.81 -0.43 -5.69 16 5 C 0.47 6.72 7.19 36.00 0.26 6.98 16 6 O -0.49 -8.00 15.36 -18.75 -0.29 -8.29 16 7 C -0.07 -0.79 3.63 -91.56 -0.33 -1.12 16 8 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 9 C 0.06 0.61 7.54 38.06 0.29 0.90 16 10 O -0.30 -3.52 11.10 -20.17 -0.22 -3.74 16 11 C 0.12 1.33 7.04 -38.92 -0.27 1.05 16 12 C -0.14 -1.33 10.06 -39.30 -0.40 -1.72 16 13 C -0.08 -0.61 10.02 -39.68 -0.40 -1.01 16 14 C -0.15 -1.24 10.07 -39.52 -0.40 -1.64 16 15 C -0.05 -0.47 10.03 -39.75 -0.40 -0.87 16 16 C -0.16 -1.81 4.94 -104.09 -0.51 -2.32 16 17 C 0.51 10.85 7.00 -10.99 -0.08 10.78 16 18 O -0.52 -13.31 16.19 -13.72 -0.22 -13.54 16 19 N -0.59 -12.62 2.86 -182.95 -0.52 -13.14 16 20 C 0.07 1.04 9.86 59.85 0.59 1.63 16 21 C 0.24 6.14 4.46 -5.20 -0.02 6.11 16 22 C -0.61 -17.23 9.39 -34.44 -0.32 -17.55 16 23 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 24 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 25 N -0.91 -27.56 13.65 55.43 0.76 -26.80 16 26 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.22 5.50 -51.93 -0.29 0.93 16 33 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.12 1.13 7.83 -51.93 -0.41 0.72 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.92 4.11 -51.93 -0.21 0.70 16 41 H 0.08 1.27 8.11 -51.92 -0.42 0.85 16 42 H 0.03 0.65 7.94 -51.93 -0.41 0.23 16 43 H 0.03 0.96 7.36 -51.93 -0.38 0.58 16 44 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -36.67 373.22 -7.98 -44.65 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.78 Total: -0.26 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.82 Total: 0.77 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.23 Total: -39.94 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.16 Total: -31.25 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.67 -7.98 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785767796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.394 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds