Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46706 * 2 1 4 4 O 1.45198 * 109.46798 * 239.99646 * 2 1 3 5 5 C 1.34234 * 116.99649 * 90.00335 * 4 2 1 6 6 O 1.20822 * 119.99969 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99719 * 179.97438 * 5 4 2 8 8 H 1.08998 * 110.83556 * 300.69840 * 7 5 4 9 9 C 1.54709 * 110.94205 * 64.42233 * 7 5 4 10 10 O 1.43759 * 102.79638 * 92.79124 * 9 7 5 11 11 C 1.36135 * 109.28829 * 27.54997 * 10 9 7 12 12 C 1.39293 * 129.87783 * 161.43378 * 11 10 9 13 13 C 1.37929 * 120.24109 * 179.57223 * 12 11 10 14 14 C 1.38289 * 120.35242 * 0.02562 * 13 12 11 15 15 C 1.38348 * 119.76453 * 0.20192 * 14 13 12 16 16 C 1.37668 * 120.00590 * 359.97438 * 15 14 13 17 17 C 1.50702 * 109.46805 * 119.99774 * 2 1 3 18 18 O 1.21282 * 119.99934 * 106.66124 * 17 2 1 19 19 N 1.34771 * 120.00465 * 286.65399 * 17 2 1 20 20 C 1.46506 * 119.99383 * 5.12582 * 19 17 2 21 21 C 1.46492 * 120.00345 * 185.12386 * 19 17 2 22 22 C 1.50698 * 109.47321 * 269.99857 * 21 19 17 23 23 H 1.08002 * 120.00043 * 0.02562 * 22 21 19 24 24 C 1.37875 * 120.00386 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99790 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00327 * 179.72916 * 24 22 21 27 27 H 1.48509 * 109.47059 * 270.28139 * 26 24 22 28 28 H 1.48504 * 109.47140 * 30.27757 * 26 24 22 29 29 H 1.48494 * 109.47446 * 150.27820 * 26 24 22 30 30 H 1.08994 * 109.46793 * 50.06970 * 1 2 3 31 31 H 1.09001 * 109.46864 * 170.06923 * 1 2 3 32 32 H 1.08999 * 109.46851 * 290.06686 * 1 2 3 33 33 H 1.09008 * 110.74921 * 211.11375 * 9 7 5 34 34 H 1.08994 * 110.74907 * 334.27908 * 9 7 5 35 35 H 1.07996 * 119.87835 * 359.59198 * 12 11 10 36 36 H 1.07995 * 119.82390 * 180.02562 * 13 12 11 37 37 H 1.08004 * 120.11566 * 180.21767 * 14 13 12 38 38 H 1.07995 * 120.00826 * 179.97438 * 15 14 13 39 39 H 1.08996 * 109.47176 * 265.07695 * 20 19 17 40 40 H 1.09001 * 109.47404 * 25.08145 * 20 19 17 41 41 H 1.09008 * 109.47038 * 145.08080 * 20 19 17 42 42 H 1.09006 * 109.47325 * 150.00280 * 21 19 17 43 43 H 1.09002 * 109.47214 * 30.00346 * 21 19 17 44 44 H 0.97000 * 120.00269 * 359.72044 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2516 -2.2506 7 6 2.7193 -0.5771 -3.5491 8 1 3.6834 -1.0584 -3.3848 9 6 1.6859 -1.5848 -4.1060 10 8 0.9229 -0.7839 -5.0241 11 6 1.7030 0.2282 -5.4936 12 6 1.5437 1.0288 -6.6223 13 6 2.4631 2.0161 -6.9091 14 6 3.5510 2.2201 -6.0800 15 6 3.7190 1.4261 -4.9596 16 6 2.8048 0.4376 -4.6728 17 6 2.0324 -0.7104 1.2305 18 8 2.5184 -1.8175 1.1357 19 7 1.9416 -0.1154 2.4364 20 6 1.2544 1.1717 2.5682 21 6 2.5301 -0.7557 3.6153 22 6 1.5074 -1.6539 4.2622 23 1 0.5181 -1.7395 3.8374 24 6 1.8349 -2.3671 5.3958 25 7 3.0397 -2.2632 5.9128 26 14 0.5649 -3.4745 6.2020 27 1 -0.2034 -2.6967 7.2072 28 1 -0.3627 -3.9988 5.1676 29 1 1.2508 -4.6082 6.8722 30 1 -0.3633 0.6596 -0.7880 31 1 -0.3633 -1.0123 -0.1772 32 1 -0.3633 0.3526 0.9653 33 1 2.1851 -2.4010 -4.6284 34 1 1.0527 -1.9700 -3.3068 35 1 0.6970 0.8760 -7.2750 36 1 2.3328 2.6331 -7.7858 37 1 4.2667 2.9966 -6.3064 38 1 4.5673 1.5817 -4.3096 39 1 1.9833 1.9801 2.5125 40 1 0.5289 1.2805 1.7620 41 1 0.7396 1.2121 3.5282 42 1 2.8432 0.0092 4.3260 43 1 3.3945 -1.3474 3.3140 44 1 3.6991 -1.6880 5.4943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785767796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = -131.486437 kcal Electronic energy + Delta-G solvation = -28552.422072 eV Core-core repulsion = 24435.285386 eV Total energy + Delta-G solvation = -4117.136686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.78001 -41.64675 -40.52977 -38.42553 -37.81278 -36.89895 -35.19198 -34.22156 -33.02232 -31.11518 -30.44829 -29.31162 -27.77945 -26.26289 -25.60120 -24.55875 -23.65319 -23.08307 -21.75029 -20.74763 -19.48387 -19.07629 -18.50893 -18.10971 -17.93124 -17.58625 -17.29046 -16.85023 -16.55464 -16.48648 -16.07793 -15.66597 -15.26760 -14.97195 -14.86964 -14.56170 -14.48464 -14.19811 -14.02386 -13.80878 -13.78965 -13.61119 -13.54344 -13.19546 -13.03060 -12.87524 -12.74047 -12.56755 -12.43693 -12.34921 -12.07550 -11.98606 -11.86353 -11.63581 -11.23597 -10.77729 -10.62749 -9.97805 -9.61094 -9.24370 -8.71883 -6.47385 0.14081 0.36790 0.84013 1.13416 1.44482 1.50312 1.59345 1.76965 2.16173 2.18470 2.52466 2.73548 2.97621 3.07611 3.23687 3.31196 3.45463 3.66291 3.70367 3.75092 4.07258 4.08338 4.18467 4.26399 4.38922 4.44094 4.45898 4.48147 4.50753 4.51262 4.60960 4.65761 4.73892 4.85082 4.96786 4.99938 5.12611 5.29679 5.37625 5.40458 5.49981 5.58431 5.76991 6.09382 6.10974 6.35325 6.42657 6.47738 7.08035 7.32107 8.63998 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.002414 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.732699 B =11597.688015 C =11877.851149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.338 6.338 5 C 0.470 3.530 6 O -0.514 6.514 7 C -0.072 4.072 8 H 0.157 0.843 9 C 0.064 3.936 10 O -0.318 6.318 11 C 0.092 3.908 12 C -0.150 4.150 13 C -0.073 4.073 14 C -0.150 4.150 15 C -0.064 4.064 16 C -0.180 4.180 17 C 0.501 3.499 18 O -0.573 6.573 19 N -0.597 5.597 20 C 0.059 3.941 21 C 0.246 3.754 22 C -0.616 4.616 23 H 0.047 0.953 24 C -0.031 4.031 25 N -0.931 5.931 26 Si 1.121 2.879 27 H -0.262 1.262 28 H -0.278 1.278 29 H -0.282 1.282 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.027 0.973 43 H -0.005 1.005 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 10.299 -26.101 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.136 0.864 4 O -0.254 6.254 5 C 0.313 3.687 6 O -0.401 6.401 7 C -0.091 4.091 8 H 0.174 0.826 9 C -0.011 4.011 10 O -0.232 6.232 11 C 0.047 3.953 12 C -0.169 4.169 13 C -0.091 4.091 14 C -0.168 4.168 15 C -0.082 4.082 16 C -0.180 4.180 17 C 0.288 3.712 18 O -0.452 6.452 19 N -0.329 5.329 20 C -0.082 4.082 21 C 0.125 3.875 22 C -0.654 4.654 23 H 0.066 0.934 24 C -0.230 4.230 25 N -0.568 5.568 26 Si 0.942 3.058 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.208 1.208 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.013 0.987 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.462 9.017 -24.866 26.676 hybrid contribution 0.781 0.968 -0.541 1.357 sum -2.681 9.985 -25.407 27.431 Atomic orbital electron populations 1.22332 0.89829 1.04589 1.05526 1.22512 0.97526 0.96805 0.80736 0.86361 1.86617 1.76840 1.42104 1.19801 1.23896 0.73895 0.85789 0.85145 1.90636 1.48025 1.17205 1.84251 1.21307 1.04098 0.96374 0.87276 0.82552 1.24043 0.92225 0.92433 0.92388 1.86822 1.37158 1.39680 1.59553 1.19932 0.89934 0.90706 0.94736 1.20623 1.02992 0.97900 0.95377 1.21345 0.92387 0.95495 0.99851 1.21422 0.99755 1.00676 0.94926 1.20588 0.97811 0.92541 0.97285 1.20279 0.99811 1.01919 0.96039 1.20633 0.79560 0.86016 0.85015 1.90669 1.46843 1.21136 1.86571 1.47893 1.55331 1.22712 1.06994 1.22333 0.97967 0.83088 1.04809 1.18978 0.93437 0.92521 0.82574 1.22514 0.99685 1.29532 1.13665 0.93435 1.27364 1.00905 0.98907 0.95775 1.70899 1.04865 1.38775 1.42252 0.82879 0.72585 0.74784 0.75535 1.18723 1.20363 1.20781 0.88973 0.91040 0.87943 0.85492 0.86289 0.83834 0.81734 0.82646 0.85030 0.90782 0.88072 0.90494 0.95511 0.98721 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 9.09 71.99 0.65 -3.68 16 2 C 0.08 2.67 2.16 29.85 0.06 2.73 16 3 H 0.12 3.48 6.74 -2.39 -0.02 3.46 16 4 O -0.34 -10.92 9.35 -45.20 -0.42 -11.34 16 5 C 0.47 13.22 7.19 71.24 0.51 13.73 16 6 O -0.51 -16.20 15.36 21.98 0.34 -15.87 16 7 C -0.07 -1.52 3.63 -11.40 -0.04 -1.56 16 8 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 9 C 0.06 1.17 7.54 72.56 0.55 1.71 16 10 O -0.32 -7.27 11.10 -95.08 -1.06 -8.32 16 11 C 0.09 2.01 7.04 22.70 0.16 2.17 16 12 C -0.15 -2.57 10.06 22.45 0.23 -2.34 16 13 C -0.07 -0.95 10.02 22.21 0.22 -0.73 16 14 C -0.15 -2.11 10.07 22.31 0.22 -1.89 16 15 C -0.06 -1.19 10.03 22.16 0.22 -0.97 16 16 C -0.18 -3.87 4.94 -19.52 -0.10 -3.97 16 17 C 0.50 21.68 7.00 87.66 0.61 22.30 16 18 O -0.57 -30.69 16.19 15.39 0.25 -30.44 16 19 N -0.60 -25.58 2.86 -851.13 -2.43 -28.01 16 20 C 0.06 1.78 9.86 127.77 1.26 3.04 16 21 C 0.25 13.14 4.46 85.63 0.38 13.52 16 22 C -0.62 -35.56 9.39 25.60 0.24 -35.32 16 23 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 24 C -0.03 -1.82 5.46 84.65 0.46 -1.35 16 25 N -0.93 -57.60 13.65 21.45 0.29 -57.31 16 26 Si 1.12 50.98 29.90 68.60 2.05 53.03 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.44 5.50 -2.39 -0.01 2.43 16 33 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.12 2.18 7.83 -2.39 -0.02 2.16 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 2.39 4.11 -2.39 -0.01 2.38 16 41 H 0.08 2.36 8.11 -2.38 -0.02 2.34 16 42 H 0.03 1.41 7.94 -2.38 -0.02 1.39 16 43 H -0.01 -0.32 7.36 -2.39 -0.02 -0.34 16 44 H 0.26 15.97 7.22 -92.71 -0.67 15.30 16 Total: -1.00 -82.15 373.22 5.80 -76.35 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.12 Total: 14.51 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.65 Total: 7.40 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.14 Total: -85.31 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -0.89 Total: -65.97 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -82.15 5.80 -76.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785767796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.137 kcal (2) G-P(sol) polarization free energy of solvation -82.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds