Wall clock time and date at job start Tue Mar 31 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.45199 * 109.47438 * 239.99770 * 2 1 3 5 5 C 1.34227 * 117.00010 * 90.00057 * 4 2 1 6 6 O 1.20830 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00298 * 180.02562 * 5 4 2 8 8 H 1.09011 * 110.83217 * 59.30290 * 7 5 4 9 9 C 1.54711 * 110.94573 * 295.58065 * 7 5 4 10 10 O 1.43857 * 102.74705 * 267.18927 * 9 7 5 11 11 C 1.36127 * 109.29105 * 332.43057 * 10 9 7 12 12 C 1.39298 * 129.87253 * 198.42731 * 11 10 9 13 13 C 1.37930 * 120.23808 * 180.48009 * 12 11 10 14 14 C 1.38285 * 120.35660 * 0.02562 * 13 12 11 15 15 C 1.38356 * 119.76249 * 359.91483 * 14 13 12 16 16 C 1.37739 * 119.97899 * 359.89085 * 15 14 13 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 O 1.21282 * 120.00069 * 114.99802 * 17 2 1 19 19 N 1.34770 * 119.99967 * 295.00335 * 17 2 1 20 20 C 1.46504 * 120.00178 * 359.97438 * 19 17 2 21 21 C 1.46504 * 120.00306 * 180.02562 * 19 17 2 22 22 C 1.50694 * 109.47328 * 89.99629 * 21 19 17 23 23 H 1.08002 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.37874 * 120.00146 * 180.02562 * 22 21 19 25 25 N 1.31517 * 120.00030 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00182 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47237 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47212 * 119.99912 * 26 24 22 29 29 H 1.48501 * 109.47366 * 240.00208 * 26 24 22 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09006 * 110.74165 * 25.53016 * 9 7 5 34 34 H 1.09000 * 110.74655 * 148.87172 * 9 7 5 35 35 H 1.08000 * 119.88016 * 0.50372 * 12 11 10 36 36 H 1.08000 * 119.82007 * 180.02562 * 13 12 11 37 37 H 1.07994 * 120.12154 * 179.84520 * 14 13 12 38 38 H 1.08000 * 120.00885 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47055 * 89.99952 * 20 19 17 40 40 H 1.09001 * 109.47310 * 210.00538 * 20 19 17 41 41 H 1.09000 * 109.46732 * 330.00473 * 20 19 17 42 42 H 1.09002 * 109.47144 * 209.99782 * 21 19 17 43 43 H 1.09003 * 109.46527 * 329.99957 * 21 19 17 44 44 H 0.97002 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2173 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 1 2.0302 -1.3506 -3.8910 9 6 4.1420 -1.1508 -3.3541 10 8 4.9831 -0.0649 -3.7818 11 6 4.3131 0.6901 -4.6951 12 6 4.7989 1.6067 -5.6248 13 6 3.9289 2.2773 -6.4590 14 6 2.5677 2.0467 -6.3803 15 6 2.0773 1.1369 -5.4606 16 6 2.9445 0.4632 -4.6292 17 6 2.0323 -0.7104 1.2305 18 8 2.6529 -1.7467 1.1216 19 7 1.7918 -0.1942 2.4520 20 6 1.0425 1.0578 2.5836 21 6 2.2806 -0.8845 3.6482 22 6 3.6619 -0.3861 3.9867 23 1 4.1289 0.3696 3.3724 24 6 4.3295 -0.8948 5.0805 25 7 3.7607 -1.8147 5.8288 26 14 6.0421 -0.2775 5.4996 27 1 6.4544 0.7492 4.5091 28 1 6.0338 0.3204 6.8589 29 1 6.9997 -1.4119 5.4636 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.3216 -1.3894 -2.3057 34 1 4.2943 -2.0282 -3.9825 35 1 5.8605 1.7928 -5.6927 36 1 4.3129 2.9863 -7.1776 37 1 1.8897 2.5756 -7.0337 38 1 1.0149 0.9534 -5.3960 39 1 -0.0216 0.8373 2.6677 40 1 1.3753 1.5884 3.4757 41 1 1.2165 1.6793 1.7052 42 1 1.6080 -0.6857 4.4827 43 1 2.3177 -1.9573 3.4589 44 1 4.2306 -2.1728 6.5981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785767802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:34 Heat of formation + Delta-G solvation = -109.120834 kcal Electronic energy + Delta-G solvation = -28656.207821 eV Core-core repulsion = 24540.040980 eV Total energy + Delta-G solvation = -4116.166841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81379 -40.35955 -38.89917 -37.65754 -36.45598 -34.95993 -33.36131 -32.84828 -31.57493 -30.35095 -29.63689 -27.73811 -26.22729 -25.17362 -24.18862 -23.20222 -22.52848 -22.05281 -20.65146 -18.91996 -18.31201 -17.36532 -17.06220 -16.93116 -16.55222 -16.22821 -15.88746 -15.83545 -15.47929 -15.03181 -14.62262 -14.31391 -14.14301 -13.75621 -13.60172 -13.42873 -13.21054 -12.94437 -12.79222 -12.44645 -12.25283 -12.18421 -12.08639 -11.97291 -11.70030 -11.48689 -11.44493 -11.23200 -11.11341 -10.91962 -10.76587 -10.62981 -10.52231 -10.19231 -9.65855 -9.22933 -8.95628 -8.47408 -8.44795 -7.76738 -6.08359 -4.13299 0.92587 1.12900 2.01058 2.37879 2.98593 3.21280 3.28570 3.36496 3.41300 3.46622 3.81687 3.87481 4.14281 4.41861 4.50172 4.56662 4.77219 4.78872 4.82625 4.93627 5.03865 5.05108 5.10027 5.22479 5.26508 5.31425 5.34010 5.47629 5.59869 5.61139 5.70920 5.81828 5.94571 6.02308 6.10306 6.18418 6.19645 6.30834 6.34045 6.89430 6.94474 7.35191 7.42773 7.62630 7.87797 8.17266 8.24835 8.80852 8.95956 9.52083 10.99818 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002860 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.888535 B = 9789.255779 C =10718.279233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.324 6.324 5 C 0.469 3.531 6 O -0.493 6.493 7 C -0.070 4.070 8 H 0.136 0.864 9 C 0.062 3.938 10 O -0.299 6.299 11 C 0.119 3.881 12 C -0.142 4.142 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.163 4.163 17 C 0.509 3.491 18 O -0.520 6.520 19 N -0.595 5.595 20 C 0.076 3.924 21 C 0.246 3.754 22 C -0.529 4.529 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 6.039 -23.368 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.239 6.239 5 C 0.310 3.690 6 O -0.380 6.380 7 C -0.089 4.089 8 H 0.154 0.846 9 C -0.013 4.013 10 O -0.212 6.212 11 C 0.073 3.927 12 C -0.160 4.160 13 C -0.095 4.095 14 C -0.171 4.171 15 C -0.066 4.066 16 C -0.164 4.164 17 C 0.293 3.707 18 O -0.396 6.396 19 N -0.328 5.328 20 C -0.068 4.068 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.860 5.735 -23.079 24.493 hybrid contribution 0.662 0.452 0.516 0.953 sum -5.198 6.187 -22.563 23.967 Atomic orbital electron populations 1.22276 0.92271 1.04058 1.04072 1.22673 0.95780 0.97679 0.82727 0.87671 1.86577 1.76497 1.41357 1.19459 1.23191 0.74701 0.85950 0.85166 1.90666 1.47173 1.16202 1.83954 1.21136 1.00508 0.98041 0.89243 0.84622 1.23960 0.84407 0.88995 1.03915 1.86918 1.40871 1.39130 1.54306 1.19619 0.90052 0.93282 0.89723 1.20274 1.00829 0.99049 0.95880 1.20914 0.93119 0.97830 0.97659 1.21016 0.95594 0.99908 1.00564 1.20286 0.99084 0.93964 0.93276 1.20149 0.93917 1.02844 0.99475 1.19733 0.81201 0.85935 0.83805 1.90699 1.39685 1.23408 1.85761 1.48074 1.53961 1.23905 1.06899 1.21854 0.95367 0.86723 1.02879 1.19368 0.94356 0.93803 0.79698 1.21459 1.00989 1.22995 1.11305 0.92362 1.24931 0.98246 0.94862 0.96001 1.69940 1.38042 1.28052 1.17259 0.86431 0.84088 0.78794 0.78069 1.19762 1.20899 1.20788 0.91355 0.90883 0.89196 0.85673 0.88316 0.85189 0.85004 0.85287 0.85721 0.93070 0.90221 0.92377 0.94559 0.93606 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.27 37.16 0.34 -1.83 16 2 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 3 H 0.11 1.73 6.14 -51.93 -0.32 1.41 16 4 O -0.32 -5.32 9.32 -45.88 -0.43 -5.75 16 5 C 0.47 6.91 7.19 36.00 0.26 7.17 16 6 O -0.49 -8.27 15.36 -18.75 -0.29 -8.56 16 7 C -0.07 -0.79 3.63 -91.56 -0.33 -1.12 16 8 H 0.14 1.09 8.14 -51.92 -0.42 0.66 16 9 C 0.06 0.69 7.55 38.06 0.29 0.98 16 10 O -0.30 -4.06 11.10 -20.15 -0.22 -4.28 16 11 C 0.12 1.49 7.04 -38.95 -0.27 1.22 16 12 C -0.14 -1.48 10.06 -39.30 -0.40 -1.87 16 13 C -0.08 -0.66 10.02 -39.68 -0.40 -1.05 16 14 C -0.15 -1.30 10.07 -39.52 -0.40 -1.70 16 15 C -0.05 -0.48 10.03 -39.72 -0.40 -0.88 16 16 C -0.16 -1.91 4.93 -104.10 -0.51 -2.42 16 17 C 0.51 10.83 7.10 -10.99 -0.08 10.75 16 18 O -0.52 -13.29 16.09 -14.05 -0.23 -13.51 16 19 N -0.59 -12.56 2.86 -182.95 -0.52 -13.08 16 20 C 0.08 1.18 8.92 59.85 0.53 1.71 16 21 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 22 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 23 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 26 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.02 5.12 -51.93 -0.27 0.76 16 33 H 0.13 1.52 7.83 -51.93 -0.41 1.11 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.05 0.65 7.02 -51.93 -0.36 0.29 16 40 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.06 0.78 6.08 -51.93 -0.32 0.46 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -36.09 373.53 -8.04 -44.13 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.82 Total: -0.57 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.87 Total: 4.75 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.21 Total: -38.77 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.17 Total: -32.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.09 -8.04 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785767802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.994 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds