Wall clock time and date at job start Tue Mar 31 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.45199 * 109.47438 * 239.99770 * 2 1 3 5 5 C 1.34227 * 117.00010 * 90.00057 * 4 2 1 6 6 O 1.20830 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00298 * 180.02562 * 5 4 2 8 8 H 1.09011 * 110.83217 * 59.30290 * 7 5 4 9 9 C 1.54711 * 110.94573 * 295.58065 * 7 5 4 10 10 O 1.43857 * 102.74705 * 267.18927 * 9 7 5 11 11 C 1.36127 * 109.29105 * 332.43057 * 10 9 7 12 12 C 1.39298 * 129.87253 * 198.42731 * 11 10 9 13 13 C 1.37930 * 120.23808 * 180.48009 * 12 11 10 14 14 C 1.38285 * 120.35660 * 0.02562 * 13 12 11 15 15 C 1.38356 * 119.76249 * 359.91483 * 14 13 12 16 16 C 1.37739 * 119.97899 * 359.89085 * 15 14 13 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 O 1.21282 * 120.00069 * 114.99802 * 17 2 1 19 19 N 1.34770 * 119.99967 * 295.00335 * 17 2 1 20 20 C 1.46504 * 120.00178 * 359.97438 * 19 17 2 21 21 C 1.46504 * 120.00306 * 180.02562 * 19 17 2 22 22 C 1.50694 * 109.47328 * 89.99629 * 21 19 17 23 23 H 1.08002 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.37874 * 120.00146 * 180.02562 * 22 21 19 25 25 N 1.31517 * 120.00030 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00182 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47237 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47212 * 119.99912 * 26 24 22 29 29 H 1.48501 * 109.47366 * 240.00208 * 26 24 22 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09006 * 110.74165 * 25.53016 * 9 7 5 34 34 H 1.09000 * 110.74655 * 148.87172 * 9 7 5 35 35 H 1.08000 * 119.88016 * 0.50372 * 12 11 10 36 36 H 1.08000 * 119.82007 * 180.02562 * 13 12 11 37 37 H 1.07994 * 120.12154 * 179.84520 * 14 13 12 38 38 H 1.08000 * 120.00885 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47055 * 89.99952 * 20 19 17 40 40 H 1.09001 * 109.47310 * 210.00538 * 20 19 17 41 41 H 1.09000 * 109.46732 * 330.00473 * 20 19 17 42 42 H 1.09002 * 109.47144 * 209.99782 * 21 19 17 43 43 H 1.09003 * 109.46527 * 329.99957 * 21 19 17 44 44 H 0.97002 * 119.99868 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2173 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 1 2.0302 -1.3506 -3.8910 9 6 4.1420 -1.1508 -3.3541 10 8 4.9831 -0.0649 -3.7818 11 6 4.3131 0.6901 -4.6951 12 6 4.7989 1.6067 -5.6248 13 6 3.9289 2.2773 -6.4590 14 6 2.5677 2.0467 -6.3803 15 6 2.0773 1.1369 -5.4606 16 6 2.9445 0.4632 -4.6292 17 6 2.0323 -0.7104 1.2305 18 8 2.6529 -1.7467 1.1216 19 7 1.7918 -0.1942 2.4520 20 6 1.0425 1.0578 2.5836 21 6 2.2806 -0.8845 3.6482 22 6 3.6619 -0.3861 3.9867 23 1 4.1289 0.3696 3.3724 24 6 4.3295 -0.8948 5.0805 25 7 3.7607 -1.8147 5.8288 26 14 6.0421 -0.2775 5.4996 27 1 6.4544 0.7492 4.5091 28 1 6.0338 0.3204 6.8589 29 1 6.9997 -1.4119 5.4636 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.3216 -1.3894 -2.3057 34 1 4.2943 -2.0282 -3.9825 35 1 5.8605 1.7928 -5.6927 36 1 4.3129 2.9863 -7.1776 37 1 1.8897 2.5756 -7.0337 38 1 1.0149 0.9534 -5.3960 39 1 -0.0216 0.8373 2.6677 40 1 1.3753 1.5884 3.4757 41 1 1.2165 1.6793 1.7052 42 1 1.6080 -0.6857 4.4827 43 1 2.3177 -1.9573 3.4589 44 1 4.2306 -2.1728 6.5981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785767802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:33 Heat of formation + Delta-G solvation = -131.373397 kcal Electronic energy + Delta-G solvation = -28657.172764 eV Core-core repulsion = 24540.040980 eV Total energy + Delta-G solvation = -4117.131785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.75159 -41.58158 -40.43610 -38.41465 -37.73912 -36.73737 -34.95157 -34.19944 -32.94855 -31.09895 -30.43619 -29.61790 -27.70716 -26.35705 -25.62774 -24.41326 -23.55813 -23.06708 -21.73348 -20.48618 -19.39752 -18.72911 -18.41935 -18.16290 -17.88319 -17.45436 -17.32649 -16.91762 -16.57226 -16.40796 -16.29064 -15.72550 -15.06305 -14.88068 -14.75450 -14.47166 -14.37394 -14.19525 -13.97966 -13.75704 -13.60730 -13.55804 -13.35446 -13.12237 -12.90786 -12.83752 -12.71591 -12.64538 -12.55881 -12.34652 -12.25714 -12.01178 -11.84862 -11.72603 -11.60233 -10.67905 -10.66720 -9.95755 -9.55586 -9.23567 -8.26829 -6.41207 0.16224 0.38287 0.87421 1.22200 1.34046 1.36584 1.47961 1.57817 2.17691 2.25443 2.38915 2.75832 2.99622 3.03264 3.31577 3.34729 3.50361 3.71923 3.77227 3.80031 4.08883 4.18840 4.26643 4.29595 4.40611 4.47783 4.49718 4.52489 4.57804 4.61669 4.65257 4.83347 4.91971 4.99623 5.05699 5.15221 5.21127 5.31602 5.38920 5.47821 5.51002 5.61201 5.74728 6.00423 6.12387 6.42153 6.57596 6.67457 7.16350 7.32477 8.80683 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002860 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.888535 B = 9789.255779 C =10718.279233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 H 0.109 0.891 4 O -0.338 6.338 5 C 0.468 3.532 6 O -0.516 6.516 7 C -0.066 4.066 8 H 0.170 0.830 9 C 0.059 3.941 10 O -0.327 6.327 11 C 0.085 3.915 12 C -0.155 4.155 13 C -0.074 4.074 14 C -0.149 4.149 15 C -0.058 4.058 16 C -0.177 4.177 17 C 0.500 3.500 18 O -0.576 6.576 19 N -0.599 5.599 20 C 0.068 3.932 21 C 0.260 3.740 22 C -0.547 4.547 23 H 0.049 0.951 24 C 0.011 3.989 25 N -0.925 5.925 26 Si 0.965 3.035 27 H -0.271 1.271 28 H -0.266 1.266 29 H -0.280 1.280 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.003 0.997 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 7.955 -25.326 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 H 0.127 0.873 4 O -0.253 6.253 5 C 0.312 3.688 6 O -0.403 6.403 7 C -0.084 4.084 8 H 0.187 0.813 9 C -0.015 4.015 10 O -0.241 6.241 11 C 0.040 3.960 12 C -0.174 4.174 13 C -0.092 4.092 14 C -0.167 4.167 15 C -0.076 4.076 16 C -0.178 4.178 17 C 0.287 3.713 18 O -0.456 6.456 19 N -0.331 5.331 20 C -0.073 4.073 21 C 0.139 3.861 22 C -0.585 4.585 23 H 0.068 0.932 24 C -0.188 4.188 25 N -0.564 5.564 26 Si 0.790 3.210 27 H -0.196 1.196 28 H -0.191 1.191 29 H -0.206 1.206 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.815 7.693 -25.045 27.072 hybrid contribution 0.930 -0.105 1.065 1.417 sum -5.886 7.588 -23.980 25.831 Atomic orbital electron populations 1.22285 0.88891 1.04647 1.05929 1.22567 0.98082 0.96470 0.80857 0.87295 1.86592 1.76860 1.42059 1.19837 1.23901 0.73788 0.85774 0.85380 1.90638 1.48316 1.17095 1.84288 1.21288 1.00935 0.98781 0.87440 0.81269 1.24072 0.84260 0.89700 1.03498 1.86857 1.41986 1.40090 1.55195 1.19998 0.90765 0.94487 0.90718 1.20621 1.01868 0.98929 0.95977 1.21338 0.93062 0.97467 0.97290 1.21457 0.96149 0.99007 1.00051 1.20638 0.99848 0.93936 0.93167 1.20296 0.93899 1.03592 1.00041 1.20599 0.80168 0.85452 0.85110 1.90660 1.42175 1.26017 1.86734 1.48055 1.54064 1.25317 1.05701 1.22195 0.96625 0.84539 1.03989 1.18862 0.93825 0.91878 0.81514 1.21701 1.02263 1.23066 1.11506 0.93244 1.25802 1.02261 0.94918 0.95830 1.70038 1.39735 1.28909 1.17726 0.85402 0.78964 0.78220 0.78427 1.19592 1.19102 1.20581 0.89321 0.90973 0.87398 0.87680 0.85078 0.84438 0.81844 0.82234 0.84029 0.89477 0.90658 0.89740 0.94728 0.97881 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.27 71.98 0.67 -3.09 16 2 C 0.08 2.56 2.16 29.85 0.06 2.63 16 3 H 0.11 3.48 6.14 -2.39 -0.01 3.46 16 4 O -0.34 -11.14 9.32 -45.05 -0.42 -11.56 16 5 C 0.47 13.62 7.19 71.23 0.51 14.13 16 6 O -0.52 -16.87 15.36 21.95 0.34 -16.53 16 7 C -0.07 -1.44 3.63 -11.40 -0.04 -1.48 16 8 H 0.17 2.40 8.14 -2.38 -0.02 2.38 16 9 C 0.06 1.33 7.55 72.57 0.55 1.88 16 10 O -0.33 -9.15 11.10 -95.00 -1.05 -10.21 16 11 C 0.09 2.12 7.04 22.68 0.16 2.28 16 12 C -0.16 -3.09 10.06 22.45 0.23 -2.86 16 13 C -0.07 -1.06 10.02 22.21 0.22 -0.84 16 14 C -0.15 -2.08 10.07 22.31 0.22 -1.86 16 15 C -0.06 -1.02 10.03 22.18 0.22 -0.80 16 16 C -0.18 -3.95 4.93 -19.53 -0.10 -4.05 16 17 C 0.50 21.78 7.10 87.66 0.62 22.40 16 18 O -0.58 -30.98 16.09 15.71 0.25 -30.73 16 19 N -0.60 -25.63 2.86 -851.12 -2.43 -28.06 16 20 C 0.07 2.01 8.92 127.77 1.14 3.15 16 21 C 0.26 13.99 5.16 85.63 0.44 14.43 16 22 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 23 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 24 C 0.01 0.66 5.46 84.65 0.46 1.12 16 25 N -0.92 -55.69 13.29 21.45 0.28 -55.40 16 26 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 27 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 2.11 5.12 -2.39 -0.01 2.09 16 33 H 0.11 2.74 7.83 -2.38 -0.02 2.72 16 34 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.09 1.97 7.02 -2.39 -0.02 1.95 16 40 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 41 H 0.08 2.06 6.08 -2.39 -0.01 2.04 16 42 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 43 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -82.32 373.53 5.63 -76.69 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.02 Total: 12.90 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.62 Total: 15.42 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.15 Total: -83.47 kcal Atomic # 8 Polarization: -68.13 SS G_CDS: -0.88 Total: -69.02 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -82.32 5.63 -76.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785767802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.684 kcal (2) G-P(sol) polarization free energy of solvation -82.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds