Wall clock time and date at job start Tue Mar 31 2020 17:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00002 * 2 1 4 4 O 1.20822 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99700 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64578 * 298.31871 * 5 3 2 7 7 C 1.55155 * 110.71937 * 61.45983 * 5 3 2 8 8 C 1.54906 * 101.58276 * 154.03866 * 7 5 3 9 9 N 1.47428 * 104.83440 * 322.99015 * 8 7 5 10 10 C 1.34771 * 125.65069 * 204.09101 * 9 8 7 11 11 O 1.21595 * 120.00151 * 174.44389 * 10 9 8 12 12 C 1.47540 * 119.99997 * 354.44765 * 10 9 8 13 13 C 1.39662 * 120.19601 * 324.81255 * 12 10 9 14 14 C 1.37830 * 119.91752 * 179.97438 * 13 12 10 15 15 C 1.38577 * 120.32238 * 0.28058 * 14 13 12 16 16 C 1.38020 * 120.39932 * 359.43919 * 15 14 13 17 17 C 1.38836 * 120.07570 * 0.55761 * 16 15 14 18 18 O 1.35517 * 120.16260 * 179.70513 * 17 16 15 19 19 C 1.34815 * 117.00181 * 5.53614 * 18 17 16 20 20 H 1.08004 * 119.99835 * 5.33127 * 19 18 17 21 21 C 1.38699 * 120.00444 * 185.32507 * 19 18 17 22 22 N 1.31512 * 119.99580 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47060 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47124 * 119.99987 * 23 21 19 26 26 H 1.48503 * 109.46796 * 240.00148 * 23 21 19 27 27 C 1.47023 * 108.69860 * 24.35638 * 9 8 7 28 28 H 1.09004 * 109.87704 * 239.29607 * 27 9 8 29 29 C 1.52997 * 109.88175 * 118.13356 * 27 9 8 30 30 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46986 * 299.99488 * 1 2 3 32 32 H 1.09004 * 109.46893 * 59.99703 * 1 2 3 33 33 H 1.09001 * 111.00625 * 35.96762 * 7 5 3 34 34 H 1.08998 * 111.00774 * 272.11264 * 7 5 3 35 35 H 1.09009 * 110.36867 * 204.15124 * 8 7 5 36 36 H 1.08997 * 110.46301 * 81.88066 * 8 7 5 37 37 H 1.08002 * 120.04258 * 0.02562 * 13 12 10 38 38 H 1.08004 * 119.83800 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.79482 * 179.70053 * 15 14 13 40 40 H 1.08000 * 119.96098 * 180.25966 * 16 15 14 41 41 H 0.97006 * 120.00350 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.47381 * 61.45158 * 29 27 9 43 43 H 1.08998 * 109.47057 * 181.45243 * 29 27 9 44 44 H 1.09002 * 109.47011 * 301.44787 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9751 0.8119 0.8988 7 6 4.1513 0.6108 -1.2739 8 6 5.5003 1.3576 -1.4224 9 7 5.2115 2.7439 -1.0122 10 6 5.9065 3.8354 -1.3889 11 8 5.5185 4.9430 -1.0706 12 6 7.1381 3.6866 -2.1875 13 6 7.9873 2.5988 -1.9728 14 6 9.1361 2.4651 -2.7225 15 6 9.4568 3.4084 -3.6856 16 6 8.6242 4.4855 -3.9127 17 6 7.4628 4.6365 -3.1672 18 8 6.6470 5.6966 -3.3846 19 6 6.9585 6.5072 -4.4158 20 1 7.7731 6.2511 -5.0771 21 6 6.2327 7.6700 -4.6276 22 7 5.2411 7.9821 -3.8222 23 14 6.6638 8.7928 -6.0569 24 1 7.8110 8.2211 -6.8069 25 1 5.4923 8.9152 -6.9611 26 1 7.0315 10.1350 -5.5385 27 6 4.0437 2.7376 -0.1191 28 1 3.2491 3.3513 -0.5437 29 6 4.4392 3.2732 1.2584 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.5094 0.7885 -2.1368 34 1 4.3104 -0.4565 -1.1205 35 1 5.8366 1.3309 -2.4590 36 1 6.2534 0.9176 -0.7687 37 1 7.7437 1.8628 -1.2209 38 1 9.7921 1.6236 -2.5551 39 1 10.3616 3.2979 -4.2648 40 1 8.8788 5.2143 -4.6680 41 1 4.7332 8.7952 -3.9705 42 1 4.7860 4.3020 1.1623 43 1 3.5753 3.2415 1.9223 44 1 5.2380 2.6575 1.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787511368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:23 Heat of formation + Delta-G solvation = -107.186475 kcal Electronic energy + Delta-G solvation = -29106.968749 eV Core-core repulsion = 24990.885788 eV Total energy + Delta-G solvation = -4116.082961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.99228 -39.81443 -38.69627 -36.98626 -36.38331 -36.34712 -32.35734 -32.24903 -31.37673 -30.04375 -28.96079 -28.18805 -26.24716 -25.41966 -23.83836 -22.71702 -21.95114 -21.40449 -20.29365 -18.96431 -18.04055 -17.94748 -17.17223 -16.96407 -16.46529 -16.11896 -15.62623 -14.98727 -14.65607 -14.46650 -14.08491 -13.98093 -13.76231 -13.61955 -13.51418 -13.48814 -13.04391 -12.84929 -12.69351 -12.49524 -12.32208 -12.05688 -11.81819 -11.67506 -11.54062 -11.36106 -11.11323 -11.03565 -11.02175 -10.92041 -10.80473 -10.71432 -10.46771 -10.41091 -9.59127 -8.94912 -8.88372 -8.28216 -8.21983 -7.31965 -6.44858 -4.05517 1.76477 2.02039 2.30797 2.40811 3.11932 3.12761 3.18720 3.38784 3.63378 3.93395 4.16864 4.32110 4.52855 4.60727 4.87113 4.91463 4.96031 5.05364 5.09227 5.11934 5.17562 5.28986 5.34783 5.48445 5.51552 5.55331 5.66385 5.74288 5.74639 5.82120 5.93879 5.98539 6.13657 6.15786 6.28646 6.41720 6.56591 6.61452 6.80100 6.95710 7.06115 7.25191 7.29034 7.55681 7.68880 7.91524 8.03090 8.94701 8.98969 9.65862 10.69715 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003526 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.058662 B = 7939.951450 C = 9333.579313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.495 6.495 5 C -0.093 4.093 6 H 0.124 0.876 7 C -0.120 4.120 8 C 0.103 3.897 9 N -0.624 5.624 10 C 0.584 3.416 11 O -0.501 6.501 12 C -0.220 4.220 13 C -0.043 4.043 14 C -0.229 4.229 15 C -0.052 4.052 16 C -0.237 4.237 17 C 0.190 3.810 18 O -0.138 6.138 19 C -0.402 4.402 20 H 0.095 0.905 21 C 0.044 3.956 22 N -0.837 5.837 23 Si 0.941 3.059 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.149 3.851 28 H 0.093 0.907 29 C -0.160 4.160 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -18.665 6.002 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.381 6.381 5 C -0.113 4.113 6 H 0.141 0.859 7 C -0.158 4.158 8 C -0.021 4.021 9 N -0.362 5.362 10 C 0.375 3.625 11 O -0.375 6.375 12 C -0.225 4.225 13 C -0.061 4.061 14 C -0.248 4.248 15 C -0.071 4.071 16 C -0.256 4.256 17 C 0.131 3.869 18 O -0.037 6.037 19 C -0.478 4.478 20 H 0.112 0.888 21 C -0.164 4.164 22 N -0.468 5.468 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 C 0.046 3.954 28 H 0.111 0.889 29 C -0.218 4.218 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.906 -17.320 6.282 18.652 hybrid contribution 0.064 0.510 -0.718 0.883 sum -2.842 -16.810 5.565 17.934 Atomic orbital electron populations 1.23281 0.76269 1.03633 1.02741 1.86490 1.23432 1.33263 1.84250 1.23382 0.91529 0.81427 0.72399 1.90720 1.66855 1.36233 1.44307 1.22133 0.87644 0.98974 1.02550 0.85855 1.22829 0.96867 1.00266 0.95875 1.22408 0.95955 0.82058 1.01645 1.48426 1.31282 1.06663 1.49858 1.17897 0.82927 0.82501 0.79139 1.90874 1.68588 1.23965 1.54031 1.18696 0.99174 0.99604 1.04978 1.20925 0.93631 0.94499 0.97075 1.20473 0.99892 1.02159 1.02257 1.20898 0.97370 0.93132 0.95697 1.21142 0.96924 1.01859 1.05661 1.19231 0.88835 0.87612 0.91233 1.84100 1.43981 1.30207 1.45397 1.21490 1.18825 1.03065 1.04378 0.88796 1.25387 0.95480 0.96730 0.98771 1.70116 1.17338 1.24055 1.35335 0.85652 0.78727 0.79542 0.79515 1.18962 1.20033 1.19993 1.21263 0.89581 0.92825 0.91777 0.88891 1.22117 1.01221 1.03341 0.95093 0.88069 0.91863 0.91774 0.89989 0.88532 0.89488 0.91160 0.86429 0.87245 0.87203 0.85072 0.91846 0.90447 0.91990 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.68 10.55 -39.25 -0.41 -4.09 16 3 C 0.47 5.88 7.27 36.01 0.26 6.14 16 4 O -0.50 -7.93 15.24 -18.75 -0.29 -8.22 16 5 C -0.09 -1.04 2.97 -89.93 -0.27 -1.31 16 6 H 0.12 1.03 7.84 -51.93 -0.41 0.63 16 7 C -0.12 -1.17 6.51 -24.59 -0.16 -1.33 16 8 C 0.10 1.24 5.19 -2.53 -0.01 1.22 16 9 N -0.62 -10.68 3.06 -164.22 -0.50 -11.18 16 10 C 0.58 13.13 7.12 -12.47 -0.09 13.04 16 11 O -0.50 -13.84 15.21 -12.41 -0.19 -14.02 16 12 C -0.22 -4.78 5.45 -104.81 -0.57 -5.35 16 13 C -0.04 -0.73 8.16 -39.20 -0.32 -1.05 16 14 C -0.23 -3.66 10.03 -39.61 -0.40 -4.06 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 16 C -0.24 -5.06 9.13 -39.44 -0.36 -5.42 16 17 C 0.19 4.71 6.63 -38.60 -0.26 4.45 16 18 O -0.14 -4.09 8.40 -16.89 -0.14 -4.23 16 19 C -0.40 -11.42 9.45 30.90 0.29 -11.13 16 20 H 0.09 2.42 5.29 -52.48 -0.28 2.15 16 21 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 22 N -0.84 -25.56 13.67 55.48 0.76 -24.80 16 23 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 C 0.15 2.33 2.84 -66.95 -0.19 2.14 16 28 H 0.09 1.78 6.89 -51.93 -0.36 1.42 16 29 C -0.16 -2.34 9.11 37.16 0.34 -2.00 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.10 7.24 -51.92 -0.38 0.72 16 36 H 0.07 0.67 6.87 -51.93 -0.36 0.32 16 37 H 0.12 1.60 5.63 -52.49 -0.30 1.30 16 38 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 1.39 7.08 -51.93 -0.37 1.03 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -36.93 366.78 -7.10 -44.03 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.67 Total: 4.79 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.16 Total: -3.50 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.26 Total: -35.98 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.03 Total: -30.57 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.93 -7.10 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787511368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.153 kcal (2) G-P(sol) polarization free energy of solvation -36.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds