Wall clock time and date at job start Tue Mar 31 2020 17:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00002 * 2 1 4 4 O 1.20822 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99700 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64578 * 298.31871 * 5 3 2 7 7 C 1.55155 * 110.71937 * 61.45983 * 5 3 2 8 8 C 1.54906 * 101.58276 * 154.03866 * 7 5 3 9 9 N 1.47428 * 104.83440 * 322.99015 * 8 7 5 10 10 C 1.34771 * 125.65069 * 204.09101 * 9 8 7 11 11 O 1.21595 * 120.00151 * 174.44389 * 10 9 8 12 12 C 1.47540 * 119.99997 * 354.44765 * 10 9 8 13 13 C 1.39662 * 120.19601 * 324.81255 * 12 10 9 14 14 C 1.37830 * 119.91752 * 179.97438 * 13 12 10 15 15 C 1.38577 * 120.32238 * 0.28058 * 14 13 12 16 16 C 1.38020 * 120.39932 * 359.43919 * 15 14 13 17 17 C 1.38836 * 120.07570 * 0.55761 * 16 15 14 18 18 O 1.35517 * 120.16260 * 179.70513 * 17 16 15 19 19 C 1.34815 * 117.00181 * 5.53614 * 18 17 16 20 20 H 1.08004 * 119.99835 * 5.33127 * 19 18 17 21 21 C 1.38699 * 120.00444 * 185.32507 * 19 18 17 22 22 N 1.31512 * 119.99580 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47060 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47124 * 119.99987 * 23 21 19 26 26 H 1.48503 * 109.46796 * 240.00148 * 23 21 19 27 27 C 1.47023 * 108.69860 * 24.35638 * 9 8 7 28 28 H 1.09004 * 109.87704 * 239.29607 * 27 9 8 29 29 C 1.52997 * 109.88175 * 118.13356 * 27 9 8 30 30 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46986 * 299.99488 * 1 2 3 32 32 H 1.09004 * 109.46893 * 59.99703 * 1 2 3 33 33 H 1.09001 * 111.00625 * 35.96762 * 7 5 3 34 34 H 1.08998 * 111.00774 * 272.11264 * 7 5 3 35 35 H 1.09009 * 110.36867 * 204.15124 * 8 7 5 36 36 H 1.08997 * 110.46301 * 81.88066 * 8 7 5 37 37 H 1.08002 * 120.04258 * 0.02562 * 13 12 10 38 38 H 1.08004 * 119.83800 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.79482 * 179.70053 * 15 14 13 40 40 H 1.08000 * 119.96098 * 180.25966 * 16 15 14 41 41 H 0.97006 * 120.00350 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.47381 * 61.45158 * 29 27 9 43 43 H 1.08998 * 109.47057 * 181.45243 * 29 27 9 44 44 H 1.09002 * 109.47011 * 301.44787 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9751 0.8119 0.8988 7 6 4.1513 0.6108 -1.2739 8 6 5.5003 1.3576 -1.4224 9 7 5.2115 2.7439 -1.0122 10 6 5.9065 3.8354 -1.3889 11 8 5.5185 4.9430 -1.0706 12 6 7.1381 3.6866 -2.1875 13 6 7.9873 2.5988 -1.9728 14 6 9.1361 2.4651 -2.7225 15 6 9.4568 3.4084 -3.6856 16 6 8.6242 4.4855 -3.9127 17 6 7.4628 4.6365 -3.1672 18 8 6.6470 5.6966 -3.3846 19 6 6.9585 6.5072 -4.4158 20 1 7.7731 6.2511 -5.0771 21 6 6.2327 7.6700 -4.6276 22 7 5.2411 7.9821 -3.8222 23 14 6.6638 8.7928 -6.0569 24 1 7.8110 8.2211 -6.8069 25 1 5.4923 8.9152 -6.9611 26 1 7.0315 10.1350 -5.5385 27 6 4.0437 2.7376 -0.1191 28 1 3.2491 3.3513 -0.5437 29 6 4.4392 3.2732 1.2584 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.5094 0.7885 -2.1368 34 1 4.3104 -0.4565 -1.1205 35 1 5.8366 1.3309 -2.4590 36 1 6.2534 0.9176 -0.7687 37 1 7.7437 1.8628 -1.2209 38 1 9.7921 1.6236 -2.5551 39 1 10.3616 3.2979 -4.2648 40 1 8.8788 5.2143 -4.6680 41 1 4.7332 8.7952 -3.9705 42 1 4.7860 4.3020 1.1623 43 1 3.5753 3.2415 1.9223 44 1 5.2380 2.6575 1.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787511368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:22 Heat of formation + Delta-G solvation = -133.157830 kcal Electronic energy + Delta-G solvation = -29108.094951 eV Core-core repulsion = 24990.885788 eV Total energy + Delta-G solvation = -4117.209163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08088 -41.27339 -40.21215 -38.41899 -38.03430 -37.49244 -34.36164 -33.64051 -32.48844 -31.48435 -30.59457 -29.04669 -27.42402 -27.24646 -25.29374 -23.86327 -23.23679 -22.90065 -21.41896 -20.35143 -19.89149 -19.14737 -18.57875 -18.06508 -17.78677 -17.24216 -16.90724 -16.65577 -16.32385 -15.94102 -15.66460 -15.38819 -15.11161 -15.00184 -14.77798 -14.62336 -14.34437 -14.29256 -13.99928 -13.77488 -13.57697 -13.40809 -13.10323 -13.02833 -12.85142 -12.69973 -12.60197 -12.49799 -12.22581 -12.10271 -12.06266 -11.89723 -11.81816 -11.51492 -11.42570 -10.87050 -10.69056 -9.84048 -9.63303 -9.03325 -8.48102 -6.19503 0.19539 0.73223 1.04880 1.29800 1.40916 1.47789 1.50356 1.91333 2.13368 2.16629 2.83570 3.10738 3.18599 3.38485 3.44800 3.71040 3.87525 4.04915 4.06454 4.17433 4.22796 4.28231 4.30128 4.31545 4.31683 4.50887 4.57263 4.61601 4.65919 4.70974 4.75500 4.93931 4.97192 4.98091 5.06640 5.11028 5.14337 5.17195 5.27849 5.45739 5.54371 5.63237 5.71689 5.94078 6.19226 6.53096 6.62736 6.92169 7.34012 7.77526 8.73720 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003526 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.058662 B = 7939.951450 C = 9333.579313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.473 3.527 4 O -0.543 6.543 5 C -0.079 4.079 6 H 0.170 0.830 7 C -0.108 4.108 8 C 0.090 3.910 9 N -0.618 5.618 10 C 0.573 3.427 11 O -0.576 6.576 12 C -0.234 4.234 13 C -0.032 4.032 14 C -0.193 4.193 15 C -0.043 4.043 16 C -0.255 4.255 17 C 0.146 3.854 18 O -0.207 6.207 19 C -0.421 4.421 20 H 0.109 0.891 21 C -0.026 4.026 22 N -0.914 5.914 23 Si 1.024 2.976 24 H -0.242 1.242 25 H -0.269 1.269 26 H -0.270 1.270 27 C 0.140 3.860 28 H 0.039 0.961 29 C -0.151 4.151 30 H 0.140 0.860 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -24.635 6.251 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.317 3.683 4 O -0.433 6.433 5 C -0.098 4.098 6 H 0.187 0.813 7 C -0.146 4.146 8 C -0.030 4.030 9 N -0.354 5.354 10 C 0.364 3.636 11 O -0.455 6.455 12 C -0.239 4.239 13 C -0.050 4.050 14 C -0.211 4.211 15 C -0.061 4.061 16 C -0.274 4.274 17 C 0.092 3.908 18 O -0.111 6.111 19 C -0.497 4.497 20 H 0.126 0.874 21 C -0.224 4.224 22 N -0.550 5.550 23 Si 0.842 3.158 24 H -0.165 1.165 25 H -0.194 1.194 26 H -0.195 1.195 27 C 0.036 3.964 28 H 0.058 0.942 29 C -0.209 4.209 30 H 0.158 0.842 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.168 0.832 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.172 0.828 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.287 -23.452 6.533 24.346 hybrid contribution -0.783 1.889 -0.638 2.143 sum -0.496 -21.562 5.895 22.359 Atomic orbital electron populations 1.23581 0.74853 1.05972 1.02233 1.86477 1.24741 1.31556 1.83504 1.23676 0.92123 0.81383 0.71138 1.90727 1.67946 1.37975 1.46611 1.22116 0.86842 0.95452 1.05409 0.81307 1.22901 0.94758 1.02664 0.94233 1.22905 0.98635 0.79059 1.02448 1.48402 1.30405 1.07747 1.48799 1.18268 0.83691 0.82749 0.78855 1.90838 1.70532 1.27236 1.56927 1.19134 0.99957 1.00636 1.04148 1.21447 0.92671 0.93231 0.97617 1.21210 0.98864 1.02103 0.98970 1.21439 0.97583 0.91248 0.95788 1.21280 0.96876 1.03677 1.05597 1.20040 0.90113 0.87378 0.93257 1.84098 1.46966 1.32784 1.47224 1.22030 1.19210 1.03450 1.05039 0.87428 1.26804 0.95118 0.98414 1.02105 1.70321 1.20284 1.25370 1.39042 0.84477 0.79142 0.76777 0.75381 1.16528 1.19412 1.19473 1.21308 0.87837 0.95792 0.91462 0.94238 1.22030 1.02752 1.01074 0.95061 0.84214 0.92032 0.92811 0.91756 0.83244 0.89919 0.86489 0.81860 0.81416 0.82811 0.86093 0.92082 0.95195 0.90563 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -6.22 10.55 -51.41 -0.54 -6.76 16 3 C 0.47 11.30 7.27 71.24 0.52 11.81 16 4 O -0.54 -18.24 15.24 21.98 0.33 -17.90 16 5 C -0.08 -1.54 2.97 -10.35 -0.03 -1.57 16 6 H 0.17 1.84 7.84 -2.39 -0.02 1.82 16 7 C -0.11 -1.66 6.51 31.98 0.21 -1.45 16 8 C 0.09 1.81 5.19 86.85 0.45 2.26 16 9 N -0.62 -21.20 3.06 -791.74 -2.42 -23.63 16 10 C 0.57 27.25 7.12 86.70 0.62 27.87 16 11 O -0.58 -35.40 15.21 12.90 0.20 -35.21 16 12 C -0.23 -10.29 5.45 -19.99 -0.11 -10.40 16 13 C -0.03 -0.93 8.16 22.52 0.18 -0.75 16 14 C -0.19 -4.89 10.03 22.25 0.22 -4.67 16 15 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 16 C -0.26 -10.92 9.13 22.36 0.20 -10.72 16 17 C 0.15 7.63 6.63 22.91 0.15 7.78 16 18 O -0.21 -13.50 8.40 -3.12 -0.03 -13.52 16 19 C -0.42 -25.99 9.45 67.93 0.64 -25.35 16 20 H 0.11 5.93 5.29 -2.91 -0.02 5.92 16 21 C -0.03 -1.59 5.49 84.85 0.47 -1.13 16 22 N -0.91 -61.66 13.67 21.62 0.30 -61.37 16 23 Si 1.02 45.33 29.55 68.60 2.03 47.36 16 24 H -0.24 -9.60 7.11 99.48 0.71 -8.89 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.14 4.47 2.84 45.34 0.13 4.60 16 28 H 0.04 1.69 6.89 -2.39 -0.02 1.67 16 29 C -0.15 -4.53 9.11 71.98 0.66 -3.87 16 30 H 0.14 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.05 0.87 8.13 -2.38 -0.02 0.85 16 33 H 0.06 1.25 8.04 -2.39 -0.02 1.23 16 34 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.78 7.24 -2.38 -0.02 1.77 16 36 H 0.12 1.36 6.87 -2.39 -0.02 1.34 16 37 H 0.16 3.28 5.63 -2.91 -0.02 3.26 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 40 H 0.12 5.30 5.71 -2.91 -0.02 5.28 16 41 H 0.27 16.71 8.31 -92.70 -0.77 15.94 16 42 H 0.03 1.17 7.08 -2.39 -0.02 1.15 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -100.47 366.78 6.62 -93.85 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.03 Total: 22.24 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.73 Total: -5.06 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.13 Total: -84.99 kcal Atomic # 8 Polarization: -73.35 SS G_CDS: -0.04 Total: -73.39 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -100.47 6.62 -93.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787511368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.312 kcal (2) G-P(sol) polarization free energy of solvation -100.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds