Wall clock time and date at job start Tue Mar 31 2020 17:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00107 * 2 1 4 4 O 1.20823 * 119.99965 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00105 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.88960 * 62.43449 * 5 3 2 7 7 C 1.55156 * 111.00985 * 298.54705 * 5 3 2 8 8 C 1.54320 * 102.94424 * 206.38563 * 7 5 3 9 9 N 1.47016 * 107.27386 * 22.19244 * 8 7 5 10 10 C 1.34773 * 125.65159 * 181.01950 * 9 8 7 11 11 O 1.21597 * 120.00256 * 185.47606 * 10 9 8 12 12 C 1.47538 * 119.99968 * 5.74930 * 10 9 8 13 13 C 1.39665 * 120.19705 * 314.26316 * 12 10 9 14 14 C 1.37829 * 119.91800 * 179.97438 * 13 12 10 15 15 C 1.38572 * 120.32293 * 359.97419 * 14 13 12 16 16 C 1.38020 * 120.40188 * 0.02880 * 15 14 13 17 17 C 1.38833 * 120.07576 * 359.71256 * 16 15 14 18 18 O 1.35514 * 120.16385 * 180.28015 * 17 16 15 19 19 C 1.34821 * 117.00294 * 5.97525 * 18 17 16 20 20 H 1.08000 * 119.99204 * 354.82699 * 19 18 17 21 21 C 1.38692 * 119.99788 * 174.82436 * 19 18 17 22 22 N 1.31526 * 119.99488 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00501 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47257 * 90.00378 * 23 21 19 25 25 H 1.48506 * 109.47204 * 210.00061 * 23 21 19 26 26 H 1.48502 * 109.46966 * 330.00213 * 23 21 19 27 27 C 1.47431 * 108.70032 * 1.28861 * 9 8 7 28 28 H 1.08997 * 110.36717 * 94.48534 * 27 9 8 29 29 C 1.52997 * 110.36295 * 216.80189 * 27 9 8 30 30 H 1.08994 * 109.47524 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46949 * 299.99420 * 1 2 3 33 33 H 1.09002 * 110.71634 * 88.02461 * 7 5 3 34 34 H 1.09003 * 110.86864 * 324.82292 * 7 5 3 35 35 H 1.08999 * 109.88214 * 262.77677 * 8 7 5 36 36 H 1.09001 * 109.88181 * 141.61143 * 8 7 5 37 37 H 1.08004 * 120.04023 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.83509 * 180.02562 * 14 13 12 39 39 H 1.08008 * 119.79650 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.95952 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 42 42 H 1.09005 * 109.47266 * 58.54876 * 29 27 9 43 43 H 1.09001 * 109.46806 * 178.54440 * 29 27 9 44 44 H 1.09005 * 109.47481 * 298.54587 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 0.0006 6 1 3.9794 0.8244 -0.9019 7 6 4.1575 0.6130 1.2733 8 6 5.5024 1.3482 1.4522 9 7 5.3955 2.6324 0.7445 10 6 6.3693 3.5590 0.6470 11 8 6.1384 4.6305 0.1206 12 6 7.7171 3.2709 1.1735 13 6 7.8695 2.6933 2.4359 14 6 9.1313 2.4262 2.9219 15 6 10.2513 2.7275 2.1637 16 6 10.1161 3.2985 0.9145 17 6 8.8529 3.5697 0.4064 18 8 8.7179 4.1252 -0.8222 19 6 9.8412 4.2767 -1.5523 20 1 10.8020 4.0388 -1.1203 21 6 9.7627 4.7381 -2.8579 22 7 10.8585 4.8854 -3.5702 23 14 8.1007 5.1488 -3.6051 24 1 7.7798 6.5751 -3.3449 25 1 8.1443 4.9106 -5.0703 26 1 7.0568 4.2871 -2.9943 27 6 4.0445 2.7414 0.1646 28 1 3.3843 3.2849 0.8405 29 6 4.1040 3.4370 -1.1968 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 4.3190 -0.4531 1.1139 34 1 3.5096 0.7791 2.1340 35 1 6.3094 0.7544 1.0229 36 1 5.6912 1.5232 2.5114 37 1 6.9996 2.4562 3.0306 38 1 9.2475 1.9791 3.8981 39 1 11.2361 2.5141 2.5527 40 1 10.9940 3.5308 0.3297 41 1 10.8036 5.2077 -4.4834 42 1 4.7557 2.8734 -1.8646 43 1 3.1022 3.4867 -1.6235 44 1 4.4965 4.4462 -1.0725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787511369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:27 Heat of formation + Delta-G solvation = -105.098636 kcal Electronic energy + Delta-G solvation = -29345.932395 eV Core-core repulsion = 25229.939970 eV Total energy + Delta-G solvation = -4115.992426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.08904 -40.01535 -38.89344 -37.16864 -36.56570 -36.50812 -32.48517 -32.41805 -31.48283 -30.17926 -29.27608 -28.28185 -26.26203 -25.38728 -23.98050 -22.78963 -22.11646 -21.37967 -20.47520 -19.21915 -18.10943 -17.90751 -17.28030 -17.16627 -16.65872 -16.20920 -15.59425 -15.20666 -14.87001 -14.57422 -14.29105 -14.08051 -13.81598 -13.76730 -13.65888 -13.54385 -13.29364 -13.08558 -12.65311 -12.44698 -12.32467 -12.26663 -12.02636 -11.86121 -11.56732 -11.43680 -11.25993 -11.20809 -11.10371 -10.87425 -10.79615 -10.73785 -10.58547 -10.18236 -9.61259 -9.09694 -8.92893 -8.46301 -8.35947 -7.51530 -6.49750 -4.15829 1.64626 1.91418 2.15222 2.30255 3.20033 3.25469 3.32237 3.36469 3.50391 4.05324 4.22226 4.25644 4.38693 4.53003 4.67302 4.78292 4.82474 4.86463 4.99831 5.00739 5.04389 5.16699 5.21515 5.33350 5.39731 5.51506 5.58888 5.61465 5.72287 5.84081 5.86246 5.89284 6.04910 6.05410 6.22287 6.33294 6.42372 6.54130 6.74975 6.84754 6.98687 7.13294 7.45069 7.45514 7.64960 7.81175 7.92438 8.69011 8.85225 9.46265 10.56137 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004072 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.143532 B = 6875.120368 C = 8597.261104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.499 6.499 5 C -0.099 4.099 6 H 0.126 0.874 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.623 5.623 10 C 0.594 3.406 11 O -0.516 6.516 12 C -0.215 4.215 13 C -0.047 4.047 14 C -0.215 4.215 15 C -0.055 4.055 16 C -0.223 4.223 17 C 0.200 3.800 18 O -0.186 6.186 19 C -0.394 4.394 20 H 0.109 0.891 21 C 0.071 3.929 22 N -0.871 5.871 23 Si 0.903 3.097 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.253 1.253 27 C 0.159 3.841 28 H 0.085 0.915 29 C -0.168 4.168 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.282 0.718 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -13.017 10.219 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.317 3.683 4 O -0.385 6.385 5 C -0.119 4.119 6 H 0.144 0.856 7 C -0.155 4.155 8 C -0.022 4.022 9 N -0.360 5.360 10 C 0.385 3.615 11 O -0.391 6.391 12 C -0.219 4.219 13 C -0.066 4.066 14 C -0.234 4.234 15 C -0.073 4.073 16 C -0.242 4.242 17 C 0.144 3.856 18 O -0.088 6.088 19 C -0.469 4.469 20 H 0.127 0.873 21 C -0.134 4.134 22 N -0.507 5.507 23 Si 0.728 3.272 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.177 1.177 27 C 0.056 3.944 28 H 0.103 0.897 29 C -0.226 4.226 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.256 -11.886 9.537 21.563 hybrid contribution -0.614 0.128 -0.408 0.748 sum -15.869 -11.758 9.129 21.758 Atomic orbital electron populations 1.23283 0.76250 1.03719 1.02656 1.86510 1.23442 1.33275 1.84102 1.23323 0.91297 0.81421 0.72217 1.90696 1.66923 1.36262 1.44636 1.22375 0.87517 0.99397 1.02615 0.85607 1.22652 0.96244 1.00782 0.95862 1.22157 0.97391 0.84937 0.97722 1.48428 1.12872 1.19229 1.55499 1.17834 0.83056 0.82498 0.78065 1.90735 1.81464 1.23477 1.43456 1.18691 0.90550 1.14694 0.98012 1.20861 0.97330 0.95123 0.93285 1.20550 0.92313 1.09576 1.00988 1.20959 0.98051 0.94950 0.93339 1.21258 0.97455 1.07612 0.97918 1.18930 0.91855 0.89138 0.85718 1.83642 1.35685 1.66667 1.22801 1.20851 0.84965 1.45887 0.95148 0.87343 1.24466 0.98908 0.95241 0.94816 1.69632 1.27637 1.43019 1.10386 0.86184 0.83204 0.80449 0.77339 1.19557 1.20984 1.17700 1.21586 0.83904 0.92084 0.96820 0.89717 1.22192 1.01789 1.04014 0.94586 0.91830 0.88026 0.91842 0.88523 0.90089 0.90374 0.90630 0.86323 0.86939 0.86812 0.84393 0.90824 0.92352 0.91962 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.41 10.55 -39.25 -0.41 -3.82 16 3 C 0.48 5.43 7.27 36.00 0.26 5.69 16 4 O -0.50 -7.04 15.37 -18.75 -0.29 -7.33 16 5 C -0.10 -1.09 2.97 -89.51 -0.27 -1.36 16 6 H 0.13 1.29 8.07 -51.93 -0.42 0.87 16 7 C -0.12 -1.01 6.39 -24.90 -0.16 -1.17 16 8 C 0.10 1.13 5.56 -3.07 -0.02 1.11 16 9 N -0.62 -9.88 3.24 -164.13 -0.53 -10.41 16 10 C 0.59 12.17 6.90 -12.47 -0.09 12.09 16 11 O -0.52 -12.58 14.21 -6.85 -0.10 -12.67 16 12 C -0.21 -4.32 5.47 -104.81 -0.57 -4.90 16 13 C -0.05 -0.75 8.53 -39.20 -0.33 -1.09 16 14 C -0.22 -3.25 10.02 -39.61 -0.40 -3.64 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 16 C -0.22 -4.62 9.16 -39.44 -0.36 -4.98 16 17 C 0.20 4.63 6.63 -38.60 -0.26 4.38 16 18 O -0.19 -5.03 7.54 -11.33 -0.09 -5.12 16 19 C -0.39 -11.09 9.95 30.90 0.31 -10.78 16 20 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 21 C 0.07 2.01 5.49 -17.51 -0.10 1.91 16 22 N -0.87 -25.05 13.96 55.48 0.77 -24.28 16 23 Si 0.90 22.86 28.62 -169.99 -4.86 18.00 16 24 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.25 -6.60 7.11 56.52 0.40 -6.19 16 27 C 0.16 2.33 2.81 -66.30 -0.19 2.15 16 28 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 29 C -0.17 -2.82 8.77 37.16 0.33 -2.50 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.73 5.92 -51.93 -0.31 0.42 16 37 H 0.12 1.51 5.73 -52.48 -0.30 1.21 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.14 2.97 5.64 -52.48 -0.30 2.68 16 41 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 44 H 0.09 1.87 5.93 -51.93 -0.31 1.56 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -33.90 364.82 -6.83 -40.73 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.65 Total: 2.50 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.17 Total: -3.08 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.24 Total: -34.69 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.89 Total: -28.95 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.90 -6.83 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787511369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.366 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds