Wall clock time and date at job start Tue Mar 31 2020 17:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00107 * 2 1 4 4 O 1.20823 * 119.99965 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00105 * 179.97438 * 3 2 1 6 6 H 1.09002 * 110.88960 * 62.43449 * 5 3 2 7 7 C 1.55156 * 111.00985 * 298.54705 * 5 3 2 8 8 C 1.54320 * 102.94424 * 206.38563 * 7 5 3 9 9 N 1.47016 * 107.27386 * 22.19244 * 8 7 5 10 10 C 1.34773 * 125.65159 * 181.01950 * 9 8 7 11 11 O 1.21597 * 120.00256 * 185.47606 * 10 9 8 12 12 C 1.47538 * 119.99968 * 5.74930 * 10 9 8 13 13 C 1.39665 * 120.19705 * 314.26316 * 12 10 9 14 14 C 1.37829 * 119.91800 * 179.97438 * 13 12 10 15 15 C 1.38572 * 120.32293 * 359.97419 * 14 13 12 16 16 C 1.38020 * 120.40188 * 0.02880 * 15 14 13 17 17 C 1.38833 * 120.07576 * 359.71256 * 16 15 14 18 18 O 1.35514 * 120.16385 * 180.28015 * 17 16 15 19 19 C 1.34821 * 117.00294 * 5.97525 * 18 17 16 20 20 H 1.08000 * 119.99204 * 354.82699 * 19 18 17 21 21 C 1.38692 * 119.99788 * 174.82436 * 19 18 17 22 22 N 1.31526 * 119.99488 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00501 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47257 * 90.00378 * 23 21 19 25 25 H 1.48506 * 109.47204 * 210.00061 * 23 21 19 26 26 H 1.48502 * 109.46966 * 330.00213 * 23 21 19 27 27 C 1.47431 * 108.70032 * 1.28861 * 9 8 7 28 28 H 1.08997 * 110.36717 * 94.48534 * 27 9 8 29 29 C 1.52997 * 110.36295 * 216.80189 * 27 9 8 30 30 H 1.08994 * 109.47524 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46949 * 299.99420 * 1 2 3 33 33 H 1.09002 * 110.71634 * 88.02461 * 7 5 3 34 34 H 1.09003 * 110.86864 * 324.82292 * 7 5 3 35 35 H 1.08999 * 109.88214 * 262.77677 * 8 7 5 36 36 H 1.09001 * 109.88181 * 141.61143 * 8 7 5 37 37 H 1.08004 * 120.04023 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.83509 * 180.02562 * 14 13 12 39 39 H 1.08008 * 119.79650 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.95952 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 42 42 H 1.09005 * 109.47266 * 58.54876 * 29 27 9 43 43 H 1.09001 * 109.46806 * 178.54440 * 29 27 9 44 44 H 1.09005 * 109.47481 * 298.54587 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 0.0006 6 1 3.9794 0.8244 -0.9019 7 6 4.1575 0.6130 1.2733 8 6 5.5024 1.3482 1.4522 9 7 5.3955 2.6324 0.7445 10 6 6.3693 3.5590 0.6470 11 8 6.1384 4.6305 0.1206 12 6 7.7171 3.2709 1.1735 13 6 7.8695 2.6933 2.4359 14 6 9.1313 2.4262 2.9219 15 6 10.2513 2.7275 2.1637 16 6 10.1161 3.2985 0.9145 17 6 8.8529 3.5697 0.4064 18 8 8.7179 4.1252 -0.8222 19 6 9.8412 4.2767 -1.5523 20 1 10.8020 4.0388 -1.1203 21 6 9.7627 4.7381 -2.8579 22 7 10.8585 4.8854 -3.5702 23 14 8.1007 5.1488 -3.6051 24 1 7.7798 6.5751 -3.3449 25 1 8.1443 4.9106 -5.0703 26 1 7.0568 4.2871 -2.9943 27 6 4.0445 2.7414 0.1646 28 1 3.3843 3.2849 0.8405 29 6 4.1040 3.4370 -1.1968 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 4.3190 -0.4531 1.1139 34 1 3.5096 0.7791 2.1340 35 1 6.3094 0.7544 1.0229 36 1 5.6912 1.5232 2.5114 37 1 6.9996 2.4562 3.0306 38 1 9.2475 1.9791 3.8981 39 1 11.2361 2.5141 2.5527 40 1 10.9940 3.5308 0.3297 41 1 10.8036 5.2077 -4.4834 42 1 4.7557 2.8734 -1.8646 43 1 3.1022 3.4867 -1.6235 44 1 4.4965 4.4462 -1.0725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787511369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:26 Heat of formation + Delta-G solvation = -126.966337 kcal Electronic energy + Delta-G solvation = -29346.880650 eV Core-core repulsion = 25229.939970 eV Total energy + Delta-G solvation = -4116.940680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10139 -41.36291 -40.34420 -38.47627 -38.14726 -37.46889 -34.53687 -33.70985 -32.57110 -31.55425 -30.83664 -29.03792 -27.35108 -27.22678 -25.36478 -23.86840 -23.28868 -22.87137 -21.46716 -20.58913 -19.90370 -19.10380 -18.72068 -18.07255 -17.87052 -17.21515 -16.95554 -16.60710 -16.48337 -15.91637 -15.73036 -15.56079 -15.27937 -15.04523 -14.97095 -14.61641 -14.46799 -14.29081 -14.21992 -14.04998 -13.72547 -13.27168 -13.19920 -13.07261 -12.96913 -12.85525 -12.61363 -12.59829 -12.38429 -12.13260 -12.10370 -11.84781 -11.78104 -11.53203 -11.45962 -10.99689 -10.67141 -9.89631 -9.67951 -9.14790 -8.59294 -6.28325 0.16489 0.64650 1.04501 1.19479 1.25963 1.39866 1.44868 1.82605 2.08704 2.20811 2.71415 2.98423 3.04333 3.10995 3.36135 3.69937 3.76616 3.96600 4.00555 4.13070 4.17205 4.23817 4.27653 4.32053 4.34395 4.46564 4.49326 4.56158 4.57718 4.73315 4.73657 4.82794 4.89007 4.95225 5.06745 5.09203 5.13352 5.29007 5.31517 5.43184 5.49717 5.63463 5.70570 5.83959 6.16215 6.44313 6.62375 6.77119 7.19501 7.55046 8.51766 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004072 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.143532 B = 6875.120368 C = 8597.261104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.483 3.517 4 O -0.532 6.532 5 C -0.093 4.093 6 H 0.134 0.866 7 C -0.101 4.101 8 C 0.089 3.911 9 N -0.618 5.618 10 C 0.583 3.417 11 O -0.572 6.572 12 C -0.219 4.219 13 C -0.038 4.038 14 C -0.180 4.180 15 C -0.047 4.047 16 C -0.244 4.244 17 C 0.158 3.842 18 O -0.230 6.230 19 C -0.397 4.397 20 H 0.094 0.906 21 C 0.026 3.974 22 N -0.911 5.911 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.260 1.260 26 H -0.275 1.275 27 C 0.155 3.845 28 H 0.081 0.919 29 C -0.163 4.163 30 H 0.058 0.942 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.286 0.714 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 -16.777 14.135 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.326 3.674 4 O -0.421 6.421 5 C -0.113 4.113 6 H 0.152 0.848 7 C -0.139 4.139 8 C -0.032 4.032 9 N -0.353 5.353 10 C 0.374 3.626 11 O -0.451 6.451 12 C -0.223 4.223 13 C -0.056 4.056 14 C -0.198 4.198 15 C -0.065 4.065 16 C -0.263 4.263 17 C 0.106 3.894 18 O -0.135 6.135 19 C -0.473 4.473 20 H 0.111 0.889 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.778 3.222 24 H -0.204 1.204 25 H -0.185 1.185 26 H -0.200 1.200 27 C 0.052 3.948 28 H 0.099 0.901 29 C -0.220 4.220 30 H 0.077 0.923 31 H 0.153 0.847 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.925 -15.737 13.512 26.771 hybrid contribution -0.221 1.083 -1.194 1.627 sum -17.147 -14.653 12.318 25.699 Atomic orbital electron populations 1.23591 0.74579 1.05890 1.02529 1.86494 1.24982 1.31823 1.83459 1.23270 0.91240 0.81511 0.71353 1.90697 1.67603 1.37472 1.46356 1.22258 0.87719 0.96646 1.04692 0.84800 1.22722 0.94414 1.01963 0.94796 1.22576 0.99330 0.82738 0.98565 1.48417 1.12228 1.19866 1.54743 1.18069 0.84086 0.82620 0.77835 1.90716 1.82477 1.26088 1.45814 1.19066 0.89570 1.14396 0.99304 1.21390 0.99715 0.93113 0.91361 1.21229 0.90794 1.05665 1.02093 1.21426 1.00891 0.92836 0.91367 1.21307 0.95839 1.09248 0.99896 1.19606 0.94084 0.90468 0.85194 1.83621 1.34726 1.70372 1.24787 1.20821 0.85249 1.45649 0.95569 0.88864 1.24988 1.01025 0.95999 0.95367 1.69675 1.28556 1.45877 1.11031 0.85465 0.79893 0.79066 0.77758 1.20420 1.18475 1.19963 1.21604 0.83457 0.94719 0.95050 0.90127 1.22070 1.01775 1.01928 0.96254 0.92348 0.84707 0.91698 0.85141 0.88341 0.90010 0.87981 0.81989 0.81417 0.83086 0.86675 0.90441 0.93715 0.90687 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.59 10.55 -51.40 -0.54 -6.13 16 3 C 0.48 9.93 7.27 71.23 0.52 10.45 16 4 O -0.53 -14.45 15.37 21.97 0.34 -14.11 16 5 C -0.09 -1.82 2.97 -10.07 -0.03 -1.85 16 6 H 0.13 2.44 8.07 -2.39 -0.02 2.42 16 7 C -0.10 -1.25 6.39 31.78 0.20 -1.04 16 8 C 0.09 1.61 5.56 86.73 0.48 2.09 16 9 N -0.62 -18.86 3.24 -791.46 -2.56 -21.42 16 10 C 0.58 24.21 6.90 86.70 0.60 24.81 16 11 O -0.57 -29.57 14.21 7.58 0.11 -29.46 16 12 C -0.22 -8.64 5.47 -19.98 -0.11 -8.75 16 13 C -0.04 -1.02 8.53 22.52 0.19 -0.83 16 14 C -0.18 -4.27 10.02 22.25 0.22 -4.05 16 15 C -0.05 -1.40 10.03 22.30 0.22 -1.17 16 16 C -0.24 -10.19 9.16 22.36 0.20 -9.99 16 17 C 0.16 7.58 6.63 22.91 0.15 7.74 16 18 O -0.23 -13.28 7.54 -8.46 -0.06 -13.34 16 19 C -0.40 -24.02 9.95 67.93 0.68 -23.35 16 20 H 0.09 5.70 5.44 -2.91 -0.02 5.69 16 21 C 0.03 1.58 5.49 84.85 0.47 2.05 16 22 N -0.91 -55.42 13.96 21.62 0.30 -55.12 16 23 Si 0.95 50.48 28.62 68.60 1.96 52.45 16 24 H -0.28 -14.84 7.11 99.48 0.71 -14.13 16 25 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -15.27 7.11 99.48 0.71 -14.57 16 27 C 0.15 4.46 2.81 45.54 0.13 4.59 16 28 H 0.08 2.41 7.53 -2.39 -0.02 2.40 16 29 C -0.16 -5.75 8.77 71.98 0.63 -5.12 16 30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 33 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.95 8.04 -2.39 -0.02 0.93 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.33 5.92 -2.39 -0.01 1.32 16 37 H 0.16 2.99 5.73 -2.91 -0.02 2.98 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 41 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 44 H 0.05 2.39 5.93 -2.38 -0.01 2.37 16 Total: -1.00 -84.35 364.82 6.33 -78.02 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.03 Total: 12.05 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.76 Total: -2.93 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.26 Total: -76.54 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -0.16 Total: -63.04 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.96 Total: 52.45 kcal Total: -84.35 6.33 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787511369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.948 kcal (2) G-P(sol) polarization free energy of solvation -84.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds