Wall clock time and date at job start Tue Mar 31 2020 17:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 116.99833 * 2 1 4 4 O 1.20823 * 120.00247 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99961 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.77861 * 326.17924 * 5 3 2 7 7 C 1.55151 * 110.72177 * 202.94280 * 5 3 2 8 8 C 1.54908 * 101.58341 * 206.13231 * 7 5 3 9 9 N 1.47421 * 104.82950 * 37.00928 * 8 7 5 10 10 C 1.34780 * 125.64831 * 155.83767 * 9 8 7 11 11 O 1.21588 * 120.00158 * 356.01693 * 10 9 8 12 12 C 1.47534 * 120.00296 * 176.02064 * 10 9 8 13 13 C 1.39674 * 120.19477 * 356.34125 * 12 10 9 14 14 C 1.37830 * 119.91665 * 179.97438 * 13 12 10 15 15 C 1.38566 * 120.32530 * 359.97438 * 14 13 12 16 16 C 1.38028 * 120.40406 * 359.72409 * 15 14 13 17 17 C 1.38833 * 120.06957 * 0.55377 * 16 15 14 18 18 O 1.35516 * 120.16274 * 179.72657 * 17 16 15 19 19 C 1.34815 * 117.00091 * 3.46814 * 18 17 16 20 20 H 1.08006 * 119.99860 * 355.12013 * 19 18 17 21 21 C 1.38695 * 120.00145 * 175.12546 * 19 18 17 22 22 N 1.31520 * 120.00115 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00133 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47178 * 270.00716 * 23 21 19 25 25 H 1.48501 * 109.46940 * 30.00574 * 23 21 19 26 26 H 1.48497 * 109.47285 * 150.00524 * 23 21 19 27 27 C 1.47019 * 108.70466 * 336.09853 * 9 8 7 28 28 H 1.09004 * 109.88295 * 241.41752 * 27 9 8 29 29 C 1.53005 * 109.88290 * 120.25080 * 27 9 8 30 30 H 1.09005 * 109.47269 * 300.00120 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00058 * 1 2 3 32 32 H 1.09002 * 109.47415 * 180.02562 * 1 2 3 33 33 H 1.09003 * 111.00533 * 88.05936 * 7 5 3 34 34 H 1.08998 * 111.00531 * 324.20878 * 7 5 3 35 35 H 1.08998 * 110.36765 * 278.17018 * 8 7 5 36 36 H 1.09006 * 110.36754 * 155.84623 * 8 7 5 37 37 H 1.07996 * 120.03931 * 359.95524 * 13 12 10 38 38 H 1.08006 * 119.83147 * 180.02562 * 14 13 12 39 39 H 1.07999 * 119.79663 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.96350 * 180.27835 * 16 15 14 41 41 H 0.96999 * 120.00269 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.46930 * 46.07773 * 29 27 9 43 43 H 1.09002 * 109.46975 * 166.07627 * 29 27 9 44 44 H 1.09001 * 109.46954 * 286.07823 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9970 0.4495 0.5663 7 6 4.0448 2.6380 0.5652 8 6 5.4225 2.7951 -0.1254 9 7 5.2319 2.2407 -1.4780 10 6 5.9631 2.5548 -2.5658 11 8 6.8221 3.4123 -2.4941 12 6 5.7211 1.8582 -3.8436 13 6 4.7890 0.8203 -3.9124 14 6 4.5671 0.1738 -5.1093 15 6 5.2642 0.5485 -6.2466 16 6 6.1839 1.5765 -6.1953 17 6 6.4247 2.2352 -4.9971 18 8 7.3312 3.2411 -4.9433 19 6 7.9141 3.6025 -6.1040 20 1 7.7111 3.0452 -7.0067 21 6 8.7744 4.6898 -6.1390 22 7 9.3426 5.0427 -7.2714 23 14 9.1250 5.6539 -4.5779 24 1 8.1377 6.7550 -4.4439 25 1 9.0211 4.7502 -3.4041 26 1 10.4950 6.2230 -4.6448 27 6 4.1082 1.2932 -1.4453 28 1 4.4548 0.2974 -1.7218 29 6 3.0123 1.7523 -2.4092 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.1536 2.5947 1.6489 34 1 3.3679 3.4412 0.2739 35 1 6.1832 2.2295 0.4127 36 1 5.7005 3.8475 -0.1824 37 1 4.2430 0.5245 -3.0287 38 1 3.8456 -0.6284 -5.1609 39 1 5.0839 0.0358 -7.1799 40 1 6.7199 1.8657 -7.0871 41 1 9.9440 5.8033 -7.2959 42 1 3.4611 2.0356 -3.3613 43 1 2.3047 0.9387 -2.5689 44 1 2.4903 2.6096 -1.9841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787511371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:32 Heat of formation + Delta-G solvation = -86.836171 kcal Electronic energy + Delta-G solvation = -29716.286602 eV Core-core repulsion = 25601.086097 eV Total energy + Delta-G solvation = -4115.200506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.46257 -41.37158 -40.28599 -38.60237 -38.26994 -37.35450 -34.54812 -34.02014 -33.00082 -31.21609 -30.62022 -29.04091 -27.40861 -27.28307 -25.32185 -23.98763 -23.52911 -22.69621 -21.13280 -20.81350 -19.97857 -18.86255 -18.60827 -18.20786 -17.71222 -17.44663 -17.03536 -16.61431 -16.46612 -16.17131 -15.90033 -15.55695 -15.39854 -14.83948 -14.70123 -14.51610 -14.27728 -14.14521 -14.12394 -14.02124 -13.59688 -13.44127 -13.20293 -13.06441 -12.89872 -12.76871 -12.67056 -12.50382 -12.13739 -12.07149 -11.89271 -11.80237 -11.70844 -11.47850 -11.40120 -10.97664 -10.75218 -9.88378 -9.64955 -9.13284 -8.59721 -6.28450 0.03700 0.64266 1.07893 1.22598 1.27711 1.56645 1.59672 1.93837 2.03574 2.28160 2.73224 2.99305 3.11738 3.18118 3.22352 3.69391 3.75746 3.90731 4.02794 4.08264 4.13555 4.20810 4.23731 4.38104 4.40932 4.45407 4.46893 4.56361 4.60650 4.70894 4.77083 4.79844 4.84030 4.88504 5.06151 5.09821 5.19162 5.25432 5.38545 5.40465 5.46495 5.62446 5.69221 5.82884 6.15164 6.41090 6.72123 6.77076 7.24861 7.57316 8.50823 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.003756 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.704122 B = 7452.083089 C = 8714.089479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.482 3.518 4 O -0.528 6.528 5 C -0.085 4.085 6 H 0.160 0.840 7 C -0.109 4.109 8 C 0.100 3.900 9 N -0.616 5.616 10 C 0.572 3.428 11 O -0.571 6.571 12 C -0.239 4.239 13 C -0.061 4.061 14 C -0.197 4.197 15 C -0.038 4.038 16 C -0.256 4.256 17 C 0.165 3.835 18 O -0.210 6.210 19 C -0.403 4.403 20 H 0.092 0.908 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.953 3.047 24 H -0.278 1.278 25 H -0.265 1.265 26 H -0.263 1.263 27 C 0.131 3.869 28 H 0.129 0.871 29 C -0.202 4.202 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.194 0.806 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.286 0.714 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -16.048 17.301 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.325 3.675 4 O -0.417 6.417 5 C -0.104 4.104 6 H 0.178 0.822 7 C -0.146 4.146 8 C -0.021 4.021 9 N -0.351 5.351 10 C 0.365 3.635 11 O -0.451 6.451 12 C -0.243 4.243 13 C -0.078 4.078 14 C -0.215 4.215 15 C -0.056 4.056 16 C -0.275 4.275 17 C 0.111 3.889 18 O -0.114 6.114 19 C -0.479 4.479 20 H 0.110 0.890 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.777 3.223 24 H -0.203 1.203 25 H -0.189 1.189 26 H -0.188 1.188 27 C 0.029 3.971 28 H 0.146 0.854 29 C -0.259 4.259 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.210 0.790 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.481 -14.985 17.350 29.447 hybrid contribution 0.501 1.277 -0.374 1.422 sum -17.980 -13.707 16.976 28.273 Atomic orbital electron populations 1.23570 0.74805 1.05772 1.02510 1.86513 1.24815 1.32164 1.83447 1.23286 0.91503 0.81448 0.71217 1.90691 1.67555 1.37421 1.46077 1.22232 0.87681 1.03126 0.97402 0.82209 1.22819 0.94396 0.95058 1.02374 1.22407 0.98575 0.99757 0.81400 1.48355 1.33136 1.44867 1.08771 1.18084 0.80325 0.81741 0.83400 1.90846 1.35317 1.34106 1.84851 1.19153 1.07348 1.06519 0.91306 1.22910 0.92495 0.90641 1.01758 1.21276 1.04429 1.04019 0.91757 1.21470 0.91447 0.92525 1.00201 1.21306 1.06227 1.02715 0.97237 1.19757 0.87379 0.87485 0.94251 1.83768 1.48370 1.46140 1.33153 1.20905 1.25861 1.14692 0.86466 0.89020 1.25030 0.95193 0.96826 1.00309 1.69679 1.30518 1.28431 1.26466 0.85448 0.77634 0.78845 0.80367 1.20327 1.18916 1.18791 1.22017 0.86408 0.94525 0.94178 0.85393 1.23054 0.98818 1.03354 1.00662 0.91969 0.92100 0.84974 0.85633 0.90761 0.89001 0.92232 0.79009 0.81391 0.83125 0.86753 0.90417 0.90831 0.88120 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.42 16 2 O -0.35 -4.40 10.57 -51.38 -0.54 -4.94 16 3 C 0.48 7.69 5.38 71.24 0.38 8.07 16 4 O -0.53 -11.90 14.37 21.97 0.32 -11.59 16 5 C -0.09 -1.14 3.37 -10.36 -0.03 -1.18 16 6 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.11 -1.75 6.38 31.98 0.20 -1.55 16 8 C 0.10 2.36 6.93 86.86 0.60 2.96 16 9 N -0.62 -18.00 3.08 -802.69 -2.47 -20.47 16 10 C 0.57 24.05 7.57 86.69 0.66 24.71 16 11 O -0.57 -30.52 15.41 16.87 0.26 -30.26 16 12 C -0.24 -9.74 5.33 -19.98 -0.11 -9.84 16 13 C -0.06 -1.72 6.37 22.52 0.14 -1.58 16 14 C -0.20 -4.93 10.02 22.25 0.22 -4.71 16 15 C -0.04 -1.19 10.03 22.30 0.22 -0.96 16 16 C -0.26 -11.10 9.16 22.36 0.20 -10.89 16 17 C 0.16 8.17 6.66 22.91 0.15 8.32 16 18 O -0.21 -12.54 6.67 0.84 0.01 -12.53 16 19 C -0.40 -25.08 9.94 67.93 0.68 -24.41 16 20 H 0.09 5.76 5.43 -2.91 -0.02 5.74 16 21 C 0.03 1.65 5.49 84.85 0.47 2.11 16 22 N -0.91 -56.50 13.96 21.62 0.30 -56.19 16 23 Si 0.95 51.67 28.62 68.60 1.96 53.63 16 24 H -0.28 -14.88 7.11 99.48 0.71 -14.17 16 25 H -0.26 -15.45 7.11 99.48 0.71 -14.74 16 26 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 27 C 0.13 2.50 2.64 45.34 0.12 2.62 16 28 H 0.13 1.83 6.21 -2.38 -0.01 1.81 16 29 C -0.20 -4.24 6.61 71.98 0.48 -3.77 16 30 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 31 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.56 7.22 -2.39 -0.02 1.54 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.72 8.00 -2.38 -0.02 1.70 16 37 H 0.19 3.84 2.06 -7.28 -0.01 3.82 16 38 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.11 5.43 5.62 -2.91 -0.02 5.42 16 41 H 0.29 16.32 8.31 -92.71 -0.77 15.55 16 42 H 0.07 1.97 4.49 -2.39 -0.01 1.96 16 43 H 0.10 1.48 7.84 -2.39 -0.02 1.46 16 44 H 0.06 1.41 6.62 -2.39 -0.02 1.39 16 Total: -1.00 -86.89 353.19 6.46 -80.43 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.04 Total: 10.59 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.59 Total: -8.67 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.17 Total: -76.66 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: 0.04 Total: -59.32 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.96 Total: 53.63 kcal Total: -86.89 6.46 -80.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787511371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.407 kcal (2) G-P(sol) polarization free energy of solvation -86.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds