Wall clock time and date at job start Tue Mar 31 2020 17:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53014 * 1 3 3 H 1.08999 * 109.82004 * 2 1 4 4 C 1.54374 * 109.82684 * 120.88463 * 2 1 3 5 5 C 1.55307 * 102.25125 * 140.96280 * 4 2 1 6 6 C 1.54952 * 100.93913 * 325.86276 * 5 4 2 7 7 H 1.09001 * 110.30965 * 277.53006 * 6 5 4 8 8 C 1.52999 * 110.30888 * 155.45842 * 6 5 4 9 9 O 1.45203 * 109.47250 * 174.99870 * 8 6 5 10 10 C 1.34749 * 117.00042 * 180.02562 * 9 8 6 11 11 O 1.21506 * 120.00049 * 359.97438 * 10 9 8 12 12 C 1.47463 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.39829 * 120.06551 * 359.72424 * 12 10 9 14 14 C 1.37613 * 119.92930 * 179.71998 * 13 12 10 15 15 C 1.39281 * 120.06659 * 0.53099 * 14 13 12 16 16 N 1.39073 * 119.93046 * 179.74113 * 15 14 13 17 17 C 1.34776 * 119.99560 * 213.66607 * 16 15 14 18 18 O 1.21721 * 120.00315 * 5.28443 * 17 16 15 19 19 C 1.46199 * 119.99516 * 185.28038 * 17 16 15 20 20 H 1.07996 * 120.00233 * 0.02562 * 19 17 16 21 21 C 1.40126 * 119.99877 * 180.02562 * 19 17 16 22 22 N 1.30642 * 119.99744 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00150 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47407 * 89.99998 * 23 21 19 25 25 H 1.48500 * 109.47343 * 209.99741 * 23 21 19 26 26 H 1.48501 * 109.47107 * 329.99751 * 23 21 19 27 27 C 1.39274 * 120.13191 * 359.76839 * 15 14 13 28 28 C 1.37604 * 120.07016 * 359.95044 * 27 15 14 29 29 O 1.43234 * 109.90227 * 239.06461 * 2 1 3 30 30 H 1.08994 * 109.46684 * 299.30086 * 1 2 3 31 31 H 1.08994 * 109.46833 * 59.30261 * 1 2 3 32 32 H 1.09001 * 109.46769 * 179.30215 * 1 2 3 33 33 H 1.09002 * 110.84748 * 259.14818 * 4 2 1 34 34 H 1.09002 * 110.85307 * 22.77143 * 4 2 1 35 35 H 1.08998 * 111.12855 * 83.78362 * 5 4 2 36 36 H 1.09003 * 111.12443 * 207.90788 * 5 4 2 37 37 H 1.09000 * 109.47307 * 295.00630 * 8 6 5 38 38 H 1.09007 * 109.47191 * 55.00023 * 8 6 5 39 39 H 1.07993 * 120.03931 * 359.97391 * 13 12 10 40 40 H 1.07997 * 119.96581 * 180.29817 * 14 13 12 41 41 H 0.96997 * 120.00176 * 33.67005 * 16 15 14 42 42 H 0.96999 * 119.99971 * 180.02562 * 22 21 19 43 43 H 1.07996 * 119.96211 * 179.97438 * 27 15 14 44 44 H 1.08002 * 120.03166 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7454 1.2463 5 6 3.2745 -1.5197 0.6786 6 6 2.7777 -1.8431 -0.7531 7 1 2.1441 -2.7300 -0.7423 8 6 3.9665 -2.0520 -1.6932 9 8 3.4844 -2.4691 -2.9978 10 6 4.4118 -2.6973 -3.9484 11 8 5.5910 -2.5513 -3.6943 12 6 3.9955 -3.1232 -5.2975 13 6 2.6391 -3.2962 -5.5900 14 6 2.2534 -3.6881 -6.8515 15 6 3.2131 -3.9230 -7.8332 16 7 2.8204 -4.3242 -9.1056 17 6 3.5971 -5.1656 -9.8164 18 8 4.5922 -5.6501 -9.3098 19 6 3.2442 -5.4965 -11.1961 20 1 2.3615 -5.0664 -11.6457 21 6 4.0513 -6.3718 -11.9350 22 7 5.1193 -6.8917 -11.3913 23 14 3.6009 -6.7940 -13.6980 24 1 4.2418 -5.8215 -14.6192 25 1 4.0766 -8.1644 -14.0158 26 1 2.1261 -6.7320 -13.8605 27 6 4.5652 -3.7576 -7.5429 28 6 4.9568 -3.3603 -6.2850 29 8 2.0177 -0.6923 -1.1552 30 1 -0.3632 0.5029 0.8962 31 1 -0.3633 0.5246 -0.8836 32 1 -0.3633 -1.0276 -0.0125 33 1 2.3657 -0.0408 2.0172 34 1 1.3018 -1.4347 1.6306 35 1 4.1627 -0.8885 0.6529 36 1 3.4598 -2.4317 1.2461 37 1 4.5202 -1.1183 -1.7919 38 1 4.6218 -2.8216 -1.2849 39 1 1.8948 -3.1184 -4.8281 40 1 1.2057 -3.8172 -7.0795 41 1 1.9877 -3.9984 -9.4814 42 1 5.6783 -7.4973 -11.9029 43 1 5.3070 -3.9410 -8.3060 44 1 6.0054 -3.2319 -6.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789001249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:04 Heat of formation + Delta-G solvation = -151.821255 kcal Electronic energy + Delta-G solvation = -27176.591421 eV Core-core repulsion = 23058.572951 eV Total energy + Delta-G solvation = -4118.018470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47617 -39.82764 -39.05641 -37.00936 -36.17870 -33.64147 -32.72259 -32.60841 -32.54048 -30.53933 -29.71344 -28.45126 -26.52180 -24.62693 -23.25577 -22.35684 -21.97226 -21.06105 -20.78820 -19.84932 -17.89882 -17.55934 -17.45595 -16.86659 -16.43548 -16.11171 -15.79106 -15.57207 -14.79530 -14.50189 -14.35652 -14.02498 -13.94163 -13.72439 -13.45990 -13.16913 -12.91326 -12.73999 -12.65959 -12.47355 -12.33331 -12.17304 -11.96888 -11.84478 -11.68722 -11.35653 -11.27561 -11.23192 -11.14896 -10.79082 -10.66568 -10.63149 -10.40497 -10.25436 -9.84808 -9.47967 -8.98984 -8.59305 -7.88563 -7.28750 -6.43698 -4.91802 1.17949 1.89676 2.70934 2.89256 3.03709 3.10203 3.13489 3.34534 3.91816 4.01301 4.15765 4.30774 4.33202 4.43650 4.48476 4.71041 4.71390 4.86501 4.95486 5.04973 5.07057 5.16875 5.21821 5.27392 5.30521 5.38391 5.41761 5.47985 5.53360 5.64238 5.74454 5.80364 5.85330 5.96472 6.10754 6.40915 6.47266 6.64563 6.73821 6.87621 6.92297 7.18154 7.23119 7.59934 7.89274 8.00061 8.03820 8.75801 9.05761 10.25899 10.46431 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.001878 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.756736 B =14906.353511 C =15573.302515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.083 3.917 7 H 0.083 0.917 8 C 0.070 3.930 9 O -0.348 6.348 10 C 0.518 3.482 11 O -0.523 6.523 12 C -0.187 4.187 13 C -0.034 4.034 14 C -0.196 4.196 15 C 0.236 3.764 16 N -0.694 5.694 17 C 0.538 3.462 18 O -0.555 6.555 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.085 3.915 22 N -0.756 5.756 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.147 4.147 28 C -0.029 4.029 29 O -0.365 6.365 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.397 0.603 42 H 0.274 0.726 43 H 0.147 0.853 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 11.291 21.236 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.098 0.902 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.025 3.975 7 H 0.101 0.899 8 C -0.004 4.004 9 O -0.265 6.265 10 C 0.365 3.635 11 O -0.413 6.413 12 C -0.190 4.190 13 C -0.053 4.053 14 C -0.217 4.217 15 C 0.134 3.866 16 N -0.336 5.336 17 C 0.345 3.655 18 O -0.436 6.436 19 C -0.571 4.571 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.384 5.384 23 Si 0.739 3.261 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.168 4.168 28 C -0.048 4.048 29 O -0.284 6.284 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.231 0.769 42 H 0.085 0.915 43 H 0.165 0.835 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.807 10.866 21.335 24.892 hybrid contribution -0.528 -0.135 -0.687 0.877 sum -7.336 10.731 20.648 24.399 Atomic orbital electron populations 1.22141 0.94756 1.02735 1.02360 1.22754 0.94562 0.96402 0.84841 0.90250 1.23193 0.97597 0.99798 0.98171 1.23245 0.99018 1.01745 0.94737 1.22996 0.91985 0.90494 0.91990 0.89902 1.23136 0.95654 1.00986 0.80663 1.86590 1.39706 1.78974 1.21225 1.21279 0.83586 0.73401 0.85223 1.90793 1.18787 1.49943 1.81804 1.18776 0.94765 1.14643 0.90797 1.21042 0.94400 0.93876 0.95974 1.20863 0.99146 1.09023 0.92702 1.18296 0.93159 0.88843 0.86281 1.44303 1.26469 1.48737 1.14055 1.18468 0.82715 0.77635 0.86656 1.90658 1.27602 1.54296 1.71058 1.20872 1.11869 1.29088 0.95276 0.90796 1.25768 0.93832 0.94176 0.99890 1.69977 1.10388 1.21433 1.36575 0.86241 0.79747 0.78294 0.81818 1.19493 1.20231 1.18719 1.21288 0.95912 1.01999 0.97644 1.21045 0.98955 0.93403 0.91394 1.88567 1.70306 1.39874 1.29692 0.91609 0.91733 0.92089 0.89787 0.90123 0.89822 0.89269 0.90563 0.89925 0.85130 0.85605 0.76906 0.91546 0.83503 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.44 37.16 0.35 -0.72 16 2 C 0.07 0.55 4.15 -26.00 -0.11 0.44 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -0.81 6.54 -24.79 -0.16 -0.98 16 5 C -0.15 -0.92 6.57 -24.48 -0.16 -1.08 16 6 C 0.08 0.77 3.73 -25.70 -0.10 0.67 16 7 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.07 0.80 5.19 37.16 0.19 0.99 16 9 O -0.35 -5.08 9.46 -41.58 -0.39 -5.48 16 10 C 0.52 8.74 7.89 34.49 0.27 9.01 16 11 O -0.52 -9.75 16.13 -19.27 -0.31 -10.06 16 12 C -0.19 -3.26 5.88 -104.94 -0.62 -3.88 16 13 C -0.03 -0.54 9.60 -39.21 -0.38 -0.91 16 14 C -0.20 -3.25 9.94 -39.42 -0.39 -3.65 16 15 C 0.24 4.75 6.27 -83.80 -0.53 4.23 16 16 N -0.69 -14.84 5.30 -11.18 -0.06 -14.90 16 17 C 0.54 14.37 7.46 -13.06 -0.10 14.27 16 18 O -0.55 -16.79 12.69 5.17 0.07 -16.72 16 19 C -0.54 -14.11 9.54 -35.68 -0.34 -14.45 16 20 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 21 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 22 N -0.76 -21.42 11.82 55.55 0.66 -20.77 16 23 Si 0.91 18.99 29.56 -169.99 -5.02 13.96 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.15 -3.10 8.62 -39.43 -0.34 -3.44 16 28 C -0.03 -0.54 9.58 -39.21 -0.38 -0.92 16 29 O -0.36 -4.02 10.71 -35.24 -0.38 -4.40 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.38 7.85 -51.93 -0.41 -0.02 16 35 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.13 1.76 7.60 -52.49 -0.40 1.36 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.40 7.11 8.79 -40.82 -0.36 6.75 16 42 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 43 H 0.15 3.48 6.41 -52.49 -0.34 3.14 16 44 H 0.13 2.33 7.64 -52.49 -0.40 1.93 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -33.69 376.72 -8.73 -42.42 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.09 Total: 8.55 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.87 Total: 1.72 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.60 Total: -35.67 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.02 Total: -36.66 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.69 -8.73 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789001249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.402 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds