Wall clock time and date at job start Tue Mar 31 2020 17:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53014 * 1 3 3 H 1.08999 * 109.82004 * 2 1 4 4 C 1.54374 * 109.82684 * 120.88463 * 2 1 3 5 5 C 1.55307 * 102.25125 * 140.96280 * 4 2 1 6 6 C 1.54952 * 100.93913 * 325.86276 * 5 4 2 7 7 H 1.09001 * 110.30965 * 277.53006 * 6 5 4 8 8 C 1.52999 * 110.30888 * 155.45842 * 6 5 4 9 9 O 1.45203 * 109.47250 * 174.99870 * 8 6 5 10 10 C 1.34749 * 117.00042 * 180.02562 * 9 8 6 11 11 O 1.21506 * 120.00049 * 359.97438 * 10 9 8 12 12 C 1.47463 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.39829 * 120.06551 * 359.72424 * 12 10 9 14 14 C 1.37613 * 119.92930 * 179.71998 * 13 12 10 15 15 C 1.39281 * 120.06659 * 0.53099 * 14 13 12 16 16 N 1.39073 * 119.93046 * 179.74113 * 15 14 13 17 17 C 1.34776 * 119.99560 * 213.66607 * 16 15 14 18 18 O 1.21721 * 120.00315 * 5.28443 * 17 16 15 19 19 C 1.46199 * 119.99516 * 185.28038 * 17 16 15 20 20 H 1.07996 * 120.00233 * 0.02562 * 19 17 16 21 21 C 1.40126 * 119.99877 * 180.02562 * 19 17 16 22 22 N 1.30642 * 119.99744 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00150 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47407 * 89.99998 * 23 21 19 25 25 H 1.48500 * 109.47343 * 209.99741 * 23 21 19 26 26 H 1.48501 * 109.47107 * 329.99751 * 23 21 19 27 27 C 1.39274 * 120.13191 * 359.76839 * 15 14 13 28 28 C 1.37604 * 120.07016 * 359.95044 * 27 15 14 29 29 O 1.43234 * 109.90227 * 239.06461 * 2 1 3 30 30 H 1.08994 * 109.46684 * 299.30086 * 1 2 3 31 31 H 1.08994 * 109.46833 * 59.30261 * 1 2 3 32 32 H 1.09001 * 109.46769 * 179.30215 * 1 2 3 33 33 H 1.09002 * 110.84748 * 259.14818 * 4 2 1 34 34 H 1.09002 * 110.85307 * 22.77143 * 4 2 1 35 35 H 1.08998 * 111.12855 * 83.78362 * 5 4 2 36 36 H 1.09003 * 111.12443 * 207.90788 * 5 4 2 37 37 H 1.09000 * 109.47307 * 295.00630 * 8 6 5 38 38 H 1.09007 * 109.47191 * 55.00023 * 8 6 5 39 39 H 1.07993 * 120.03931 * 359.97391 * 13 12 10 40 40 H 1.07997 * 119.96581 * 180.29817 * 14 13 12 41 41 H 0.96997 * 120.00176 * 33.67005 * 16 15 14 42 42 H 0.96999 * 119.99971 * 180.02562 * 22 21 19 43 43 H 1.07996 * 119.96211 * 179.97438 * 27 15 14 44 44 H 1.08002 * 120.03166 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7454 1.2463 5 6 3.2745 -1.5197 0.6786 6 6 2.7777 -1.8431 -0.7531 7 1 2.1441 -2.7300 -0.7423 8 6 3.9665 -2.0520 -1.6932 9 8 3.4844 -2.4691 -2.9978 10 6 4.4118 -2.6973 -3.9484 11 8 5.5910 -2.5513 -3.6943 12 6 3.9955 -3.1232 -5.2975 13 6 2.6391 -3.2962 -5.5900 14 6 2.2534 -3.6881 -6.8515 15 6 3.2131 -3.9230 -7.8332 16 7 2.8204 -4.3242 -9.1056 17 6 3.5971 -5.1656 -9.8164 18 8 4.5922 -5.6501 -9.3098 19 6 3.2442 -5.4965 -11.1961 20 1 2.3615 -5.0664 -11.6457 21 6 4.0513 -6.3718 -11.9350 22 7 5.1193 -6.8917 -11.3913 23 14 3.6009 -6.7940 -13.6980 24 1 4.2418 -5.8215 -14.6192 25 1 4.0766 -8.1644 -14.0158 26 1 2.1261 -6.7320 -13.8605 27 6 4.5652 -3.7576 -7.5429 28 6 4.9568 -3.3603 -6.2850 29 8 2.0177 -0.6923 -1.1552 30 1 -0.3632 0.5029 0.8962 31 1 -0.3633 0.5246 -0.8836 32 1 -0.3633 -1.0276 -0.0125 33 1 2.3657 -0.0408 2.0172 34 1 1.3018 -1.4347 1.6306 35 1 4.1627 -0.8885 0.6529 36 1 3.4598 -2.4317 1.2461 37 1 4.5202 -1.1183 -1.7919 38 1 4.6218 -2.8216 -1.2849 39 1 1.8948 -3.1184 -4.8281 40 1 1.2057 -3.8172 -7.0795 41 1 1.9877 -3.9984 -9.4814 42 1 5.6783 -7.4973 -11.9029 43 1 5.3070 -3.9410 -8.3060 44 1 6.0054 -3.2319 -6.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789001249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:03 Heat of formation + Delta-G solvation = -173.061855 kcal Electronic energy + Delta-G solvation = -27177.512483 eV Core-core repulsion = 23058.572951 eV Total energy + Delta-G solvation = -4118.939532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70333 -40.83926 -40.41753 -38.71694 -37.48302 -35.43311 -34.58111 -33.35130 -33.23136 -32.00101 -31.21364 -29.31702 -28.38096 -25.58903 -24.54698 -23.79690 -22.59897 -22.31944 -21.66375 -21.47418 -19.58990 -18.95870 -18.41094 -18.09936 -17.78368 -17.55033 -17.17394 -16.67877 -16.14270 -15.77998 -15.66348 -15.30539 -14.99180 -14.74435 -14.62194 -14.49235 -14.31287 -14.24257 -13.77504 -13.56615 -13.44839 -13.23009 -13.12015 -12.85824 -12.79584 -12.74456 -12.68776 -12.37791 -12.18181 -12.03876 -11.87332 -11.74058 -11.60231 -11.58331 -11.18343 -10.91737 -10.52079 -10.13617 -9.85994 -8.96043 -8.39876 -6.97976 -0.28770 0.44003 1.37944 1.40858 1.50226 1.55318 1.57528 2.19618 2.34823 2.71795 2.77398 2.87461 3.45629 3.52959 3.55678 3.84149 3.86907 3.94273 4.00099 4.01257 4.11399 4.31480 4.35600 4.36312 4.39832 4.45067 4.50553 4.64423 4.76043 4.82938 4.89414 5.01295 5.01925 5.05201 5.13685 5.23809 5.24616 5.29082 5.36192 5.37176 5.39768 5.66549 5.76422 6.11512 6.12086 6.23382 6.68641 6.75212 7.25093 8.28699 8.53252 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.001878 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.756736 B =14906.353511 C =15573.302515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.061 3.939 3 H 0.081 0.919 4 C -0.142 4.142 5 C -0.144 4.144 6 C 0.082 3.918 7 H 0.087 0.913 8 C 0.063 3.937 9 O -0.346 6.346 10 C 0.523 3.477 11 O -0.545 6.545 12 C -0.186 4.186 13 C -0.020 4.020 14 C -0.176 4.176 15 C 0.209 3.791 16 N -0.686 5.686 17 C 0.526 3.474 18 O -0.603 6.603 19 C -0.561 4.561 20 H 0.097 0.903 21 C 0.028 3.972 22 N -0.811 5.811 23 Si 1.002 2.998 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.245 1.245 27 C -0.169 4.169 28 C -0.033 4.033 29 O -0.396 6.396 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.414 0.586 42 H 0.278 0.722 43 H 0.108 0.892 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 11.944 22.684 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.004 3.996 3 H 0.099 0.901 4 C -0.179 4.179 5 C -0.182 4.182 6 C 0.024 3.976 7 H 0.105 0.895 8 C -0.011 4.011 9 O -0.262 6.262 10 C 0.371 3.629 11 O -0.437 6.437 12 C -0.189 4.189 13 C -0.038 4.038 14 C -0.196 4.196 15 C 0.109 3.891 16 N -0.329 5.329 17 C 0.333 3.667 18 O -0.488 6.488 19 C -0.596 4.596 20 H 0.115 0.885 21 C -0.188 4.188 22 N -0.440 5.440 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.168 1.168 27 C -0.190 4.190 28 C -0.052 4.052 29 O -0.317 6.317 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.183 0.817 40 H 0.180 0.820 41 H 0.251 0.749 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.527 11.572 22.830 27.311 hybrid contribution 0.284 -0.214 -0.929 0.994 sum -9.244 11.358 21.901 26.346 Atomic orbital electron populations 1.22130 0.94188 1.02612 1.02793 1.22982 0.95100 0.96537 0.84995 0.90120 1.23194 0.97293 0.99985 0.97477 1.23273 0.99352 1.02800 0.92772 1.23092 0.91197 0.90379 0.92903 0.89548 1.23492 0.97192 1.01012 0.79387 1.86567 1.39023 1.78436 1.22169 1.21111 0.83464 0.72954 0.85411 1.90785 1.19802 1.50880 1.82239 1.18947 0.95348 1.13681 0.90887 1.21390 0.94168 0.91941 0.96320 1.21163 1.00054 1.06723 0.91703 1.18515 0.93483 0.90460 0.86610 1.43790 1.26478 1.48184 1.14488 1.18805 0.82511 0.77943 0.87418 1.90622 1.29707 1.56320 1.72189 1.21435 1.12918 1.29632 0.95604 0.88457 1.27032 0.93191 0.93401 1.05195 1.70143 1.12113 1.22636 1.39128 0.84945 0.80254 0.77972 0.74754 1.18669 1.19885 1.16848 1.21034 0.96086 1.04107 0.97767 1.20987 0.99531 0.93629 0.91088 1.88529 1.70728 1.40561 1.31862 0.89576 0.92970 0.92393 0.87944 0.89150 0.89623 0.87373 0.91159 0.88750 0.81691 0.81977 0.74939 0.91156 0.87400 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.44 71.99 0.68 -1.14 16 2 C 0.06 0.81 4.15 31.07 0.13 0.94 16 3 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.14 -1.12 6.54 31.85 0.21 -0.91 16 5 C -0.14 -1.39 6.57 32.05 0.21 -1.18 16 6 C 0.08 1.35 3.73 31.26 0.12 1.47 16 7 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 8 C 0.06 1.34 5.19 71.98 0.37 1.71 16 9 O -0.35 -9.52 9.46 -55.67 -0.53 -10.05 16 10 C 0.52 17.19 7.89 70.25 0.55 17.74 16 11 O -0.54 -20.26 16.13 19.82 0.32 -19.94 16 12 C -0.19 -6.35 5.88 -20.07 -0.12 -6.47 16 13 C -0.02 -0.57 9.60 22.51 0.22 -0.35 16 14 C -0.18 -5.45 9.94 22.37 0.22 -5.23 16 15 C 0.21 8.51 6.27 38.49 0.24 8.75 16 16 N -0.69 -29.75 5.30 -307.50 -1.63 -31.38 16 17 C 0.53 29.11 7.46 86.31 0.64 29.76 16 18 O -0.60 -38.66 12.69 -4.41 -0.06 -38.72 16 19 C -0.56 -29.93 9.54 24.80 0.24 -29.69 16 20 H 0.10 4.54 7.85 -2.91 -0.02 4.52 16 21 C 0.03 1.51 5.50 85.33 0.47 1.98 16 22 N -0.81 -47.78 11.82 21.85 0.26 -47.52 16 23 Si 1.00 38.85 29.56 68.60 2.03 40.88 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 26 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 27 C -0.17 -7.49 8.62 22.37 0.19 -7.30 16 28 C -0.03 -1.30 9.58 22.51 0.22 -1.08 16 29 O -0.40 -8.17 10.71 -148.97 -1.60 -9.76 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.56 7.85 -2.39 -0.02 0.54 16 35 H 0.09 0.80 8.06 -2.39 -0.02 0.78 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.17 3.75 7.60 -2.91 -0.02 3.73 16 40 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 41 H 0.41 14.56 8.79 -92.71 -0.81 13.74 16 42 H 0.28 14.85 8.29 -92.71 -0.77 14.08 16 43 H 0.11 5.62 6.41 -2.91 -0.02 5.60 16 44 H 0.13 4.92 7.64 -2.91 -0.02 4.90 16 Total: -1.00 -77.41 376.72 3.61 -73.80 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.21 Total: 33.67 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.59 Total: 9.01 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -1.37 Total: -78.90 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -1.86 Total: -78.46 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -77.41 3.61 -73.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789001249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.259 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds