Wall clock time and date at job start Tue Mar 31 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46977 * 2 1 4 4 O 1.45204 * 109.47122 * 120.00322 * 2 1 3 5 5 C 1.34227 * 116.99887 * 269.99872 * 4 2 1 6 6 O 1.20833 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00226 * 180.02562 * 5 4 2 8 8 H 1.09003 * 110.66346 * 301.78919 * 7 5 4 9 9 C 1.54712 * 110.74738 * 64.99908 * 7 5 4 10 10 C 1.51638 * 101.90314 * 143.69293 * 9 7 5 11 11 C 1.37739 * 132.17291 * 164.24400 * 10 9 7 12 12 C 1.38352 * 119.97688 * 180.40515 * 11 10 9 13 13 C 1.38288 * 119.76273 * 0.02562 * 12 11 10 14 14 C 1.37926 * 120.35597 * 359.82569 * 13 12 11 15 15 C 1.38881 * 107.03227 * 344.29481 * 10 9 7 16 16 O 1.36129 * 111.25534 * 359.39776 * 15 10 9 17 17 C 1.50703 * 109.47060 * 239.99940 * 2 1 3 18 18 O 1.21272 * 120.00078 * 248.57045 * 17 2 1 19 19 N 1.34776 * 119.99524 * 68.56742 * 17 2 1 20 20 C 1.46493 * 120.00468 * 4.58494 * 19 17 2 21 21 C 1.46505 * 119.99787 * 184.58279 * 19 17 2 22 22 C 1.50702 * 109.46721 * 90.00041 * 21 19 17 23 23 H 1.07995 * 120.00657 * 0.02562 * 22 21 19 24 24 C 1.37882 * 119.99463 * 180.02562 * 22 21 19 25 25 N 1.31513 * 120.00396 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99687 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47216 * 90.00223 * 26 24 22 28 28 H 1.48498 * 109.46965 * 209.99941 * 26 24 22 29 29 H 1.48505 * 109.46963 * 329.99674 * 26 24 22 30 30 H 1.09003 * 109.46429 * 307.15038 * 1 2 3 31 31 H 1.08999 * 109.47105 * 67.14776 * 1 2 3 32 32 H 1.08999 * 109.47076 * 187.15446 * 1 2 3 33 33 H 1.09002 * 110.94074 * 261.84821 * 9 7 5 34 34 H 1.08997 * 110.94119 * 25.53452 * 9 7 5 35 35 H 1.07999 * 120.01329 * 0.38345 * 11 10 9 36 36 H 1.08007 * 120.11768 * 179.97438 * 12 11 10 37 37 H 1.08006 * 119.82158 * 179.84923 * 13 12 11 38 38 H 1.07993 * 119.87786 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47185 * 86.11495 * 20 19 17 40 40 H 1.09002 * 109.47622 * 206.11807 * 20 19 17 41 41 H 1.08998 * 109.47318 * 326.12107 * 20 19 17 42 42 H 1.08997 * 109.47313 * 210.00327 * 21 19 17 43 43 H 1.09005 * 109.47203 * 330.00465 * 21 19 17 44 44 H 0.96998 * 120.00396 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7194 -0.5771 3.5492 8 1 2.0399 -1.3635 3.8779 9 6 4.1489 -1.1351 3.3523 10 6 4.7814 -0.8582 4.7023 11 6 5.9241 -1.3373 5.3039 12 6 6.2670 -0.9112 6.5747 13 6 5.4588 -0.0048 7.2362 14 6 4.3158 0.4786 6.6345 15 6 3.9659 0.0582 5.3534 16 8 2.9014 0.4079 4.5803 17 6 2.0324 -0.7104 -1.2305 18 8 2.5963 -1.7790 -1.1260 19 7 1.8549 -0.1582 -2.4470 20 6 1.2645 1.1772 -2.5663 21 6 2.2523 -0.8934 -3.6503 22 6 1.0933 -1.7248 -4.1367 23 1 0.1544 -1.7069 -3.6033 24 6 1.2316 -2.5082 -5.2629 25 7 2.3750 -2.5304 -5.9122 26 14 -0.2053 -3.5381 -5.8663 27 1 -1.0173 -2.7431 -6.8221 28 1 0.3084 -4.7546 -6.5456 29 1 -1.0492 -3.9355 -4.7107 30 1 -0.3632 0.6207 0.8192 31 1 -0.3633 0.3991 -0.9470 32 1 -0.3633 -1.0197 0.1280 33 1 4.1244 -2.2051 3.1455 34 1 4.6708 -0.5986 2.5600 35 1 6.5520 -2.0457 4.7840 36 1 7.1623 -1.2858 7.0488 37 1 5.7243 0.3266 8.2293 38 1 3.6904 1.1865 7.1580 39 1 2.0472 1.9301 -2.4732 40 1 0.7800 1.2749 -3.5378 41 1 0.5271 1.3203 -1.7765 42 1 2.5446 -0.1874 -4.4275 43 1 3.0941 -1.5453 -3.4163 44 1 2.4724 -3.0818 -6.7042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792137185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:15 Heat of formation + Delta-G solvation = -105.769054 kcal Electronic energy + Delta-G solvation = -28161.961647 eV Core-core repulsion = 24045.940150 eV Total energy + Delta-G solvation = -4116.021497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.80031 -40.53629 -38.99159 -37.74860 -36.44551 -34.97340 -33.29302 -32.86297 -31.71537 -30.41462 -29.99751 -27.77268 -26.24060 -25.44301 -24.21674 -22.89311 -22.46244 -21.97649 -20.96677 -18.96540 -18.34641 -17.66886 -17.23124 -17.07409 -16.59970 -16.23891 -16.05775 -15.74581 -15.35548 -14.72801 -14.54798 -14.44071 -14.02117 -13.85001 -13.74609 -13.51094 -13.33392 -13.10115 -12.81517 -12.57966 -12.33019 -12.22425 -12.11256 -12.09269 -11.69312 -11.56758 -11.41247 -11.24897 -11.15805 -10.94005 -10.81793 -10.60924 -10.55428 -10.21041 -9.69803 -9.24411 -8.98687 -8.51874 -8.49136 -7.77577 -6.10010 -4.15459 0.92413 1.02390 1.84688 1.89276 3.04392 3.17038 3.26714 3.33807 3.37560 3.39062 3.73661 3.98316 4.15655 4.38937 4.46955 4.50607 4.60120 4.72312 4.77221 4.90532 4.94313 5.02601 5.04404 5.20936 5.24606 5.33047 5.40090 5.45647 5.60493 5.66544 5.68090 5.82604 5.95046 6.01775 6.04345 6.12864 6.20146 6.22105 6.24872 6.77863 6.93390 7.34705 7.40870 7.52087 7.85663 8.15101 8.23210 8.78058 8.93368 9.49749 10.98099 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002322 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.916529 B =12057.146779 C =12622.887561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.105 0.895 4 O -0.317 6.317 5 C 0.465 3.535 6 O -0.486 6.486 7 C 0.095 3.905 8 H 0.131 0.869 9 C -0.097 4.097 10 C -0.170 4.170 11 C -0.066 4.066 12 C -0.147 4.147 13 C -0.086 4.086 14 C -0.133 4.133 15 C 0.103 3.897 16 O -0.277 6.277 17 C 0.510 3.490 18 O -0.520 6.520 19 N -0.595 5.595 20 C 0.066 3.934 21 C 0.246 3.754 22 C -0.530 4.530 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 6.235 23.320 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.233 6.233 5 C 0.306 3.694 6 O -0.372 6.372 7 C 0.038 3.962 8 H 0.148 0.852 9 C -0.134 4.134 10 C -0.171 4.171 11 C -0.084 4.084 12 C -0.165 4.165 13 C -0.104 4.104 14 C -0.152 4.152 15 C 0.058 3.942 16 O -0.190 6.190 17 C 0.294 3.706 18 O -0.396 6.396 19 N -0.328 5.328 20 C -0.078 4.078 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.339 6.132 23.136 24.167 hybrid contribution -0.875 -0.414 -0.639 1.160 sum 2.463 5.717 22.497 23.343 Atomic orbital electron populations 1.22322 0.91963 1.04358 1.04258 1.22737 0.96147 0.97498 0.82307 0.87722 1.86586 1.76422 1.41054 1.19216 1.22947 0.75261 0.85932 0.85290 1.90697 1.46582 1.16108 1.83814 1.22581 0.99603 0.89425 0.84640 0.85172 1.21724 0.91481 1.04556 0.95597 1.20740 0.98025 1.02221 0.96094 1.20360 0.94643 0.98677 0.94738 1.21082 1.00735 0.99486 0.95194 1.20901 0.93345 0.96340 0.99798 1.20262 0.99434 1.03940 0.91552 1.19577 0.87451 0.95205 0.91917 1.86899 1.46779 1.45412 1.39953 1.19699 0.80967 0.86141 0.83763 1.90697 1.41703 1.21422 1.85735 1.48064 1.60687 1.17270 1.06803 1.21993 0.97923 0.84156 1.03680 1.19380 0.96823 0.91651 0.79418 1.21413 0.98384 1.26382 1.10668 0.92332 1.24944 0.96103 0.96598 0.96441 1.69927 1.24043 1.40234 1.18990 0.86478 0.82214 0.79811 0.78812 1.20598 1.21040 1.19859 0.91148 0.88747 0.90460 0.86851 0.88211 0.85313 0.85266 0.84982 0.85204 0.93354 0.90032 0.91660 0.94594 0.93558 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.14 37.16 0.34 -2.02 16 2 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 3 H 0.11 1.59 6.73 -51.93 -0.35 1.24 16 4 O -0.32 -5.11 9.43 -45.85 -0.43 -5.54 16 5 C 0.47 6.75 7.23 36.01 0.26 7.01 16 6 O -0.49 -8.09 15.79 -25.25 -0.40 -8.49 16 7 C 0.10 1.11 4.16 -26.98 -0.11 0.99 16 8 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.10 -1.02 6.64 -26.52 -0.18 -1.19 16 10 C -0.17 -1.77 6.27 -104.10 -0.65 -2.42 16 11 C -0.07 -0.57 10.03 -39.72 -0.40 -0.97 16 12 C -0.15 -1.08 10.07 -39.52 -0.40 -1.48 16 13 C -0.09 -0.63 10.01 -39.68 -0.40 -1.03 16 14 C -0.13 -1.23 10.06 -39.30 -0.40 -1.63 16 15 C 0.10 1.18 7.04 -38.95 -0.27 0.90 16 16 O -0.28 -3.62 10.39 -39.27 -0.41 -4.03 16 17 C 0.51 10.68 7.03 -10.98 -0.08 10.60 16 18 O -0.52 -13.08 16.08 -13.94 -0.22 -13.31 16 19 N -0.59 -12.40 2.86 -182.95 -0.52 -12.92 16 20 C 0.07 1.02 9.80 59.84 0.59 1.61 16 21 C 0.25 6.30 5.18 -5.19 -0.03 6.28 16 22 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 23 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 26 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.22 5.46 -51.93 -0.28 0.94 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.13 7.92 -51.93 -0.41 0.71 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 37 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 41 H 0.07 0.83 4.31 -51.93 -0.22 0.61 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -35.01 375.31 -8.65 -43.66 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.84 Total: -0.50 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.20 Total: 4.42 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.21 Total: -38.31 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.46 Total: -31.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.01 -8.65 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792137185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.105 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds