Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46977 * 2 1 4 4 O 1.45204 * 109.47122 * 120.00322 * 2 1 3 5 5 C 1.34227 * 116.99887 * 269.99872 * 4 2 1 6 6 O 1.20833 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00226 * 180.02562 * 5 4 2 8 8 H 1.09003 * 110.66346 * 301.78919 * 7 5 4 9 9 C 1.54712 * 110.74738 * 64.99908 * 7 5 4 10 10 C 1.51638 * 101.90314 * 143.69293 * 9 7 5 11 11 C 1.37739 * 132.17291 * 164.24400 * 10 9 7 12 12 C 1.38352 * 119.97688 * 180.40515 * 11 10 9 13 13 C 1.38288 * 119.76273 * 0.02562 * 12 11 10 14 14 C 1.37926 * 120.35597 * 359.82569 * 13 12 11 15 15 C 1.38881 * 107.03227 * 344.29481 * 10 9 7 16 16 O 1.36129 * 111.25534 * 359.39776 * 15 10 9 17 17 C 1.50703 * 109.47060 * 239.99940 * 2 1 3 18 18 O 1.21272 * 120.00078 * 248.57045 * 17 2 1 19 19 N 1.34776 * 119.99524 * 68.56742 * 17 2 1 20 20 C 1.46493 * 120.00468 * 4.58494 * 19 17 2 21 21 C 1.46505 * 119.99787 * 184.58279 * 19 17 2 22 22 C 1.50702 * 109.46721 * 90.00041 * 21 19 17 23 23 H 1.07995 * 120.00657 * 0.02562 * 22 21 19 24 24 C 1.37882 * 119.99463 * 180.02562 * 22 21 19 25 25 N 1.31513 * 120.00396 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99687 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47216 * 90.00223 * 26 24 22 28 28 H 1.48498 * 109.46965 * 209.99941 * 26 24 22 29 29 H 1.48505 * 109.46963 * 329.99674 * 26 24 22 30 30 H 1.09003 * 109.46429 * 307.15038 * 1 2 3 31 31 H 1.08999 * 109.47105 * 67.14776 * 1 2 3 32 32 H 1.08999 * 109.47076 * 187.15446 * 1 2 3 33 33 H 1.09002 * 110.94074 * 261.84821 * 9 7 5 34 34 H 1.08997 * 110.94119 * 25.53452 * 9 7 5 35 35 H 1.07999 * 120.01329 * 0.38345 * 11 10 9 36 36 H 1.08007 * 120.11768 * 179.97438 * 12 11 10 37 37 H 1.08006 * 119.82158 * 179.84923 * 13 12 11 38 38 H 1.07993 * 119.87786 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47185 * 86.11495 * 20 19 17 40 40 H 1.09002 * 109.47622 * 206.11807 * 20 19 17 41 41 H 1.08998 * 109.47318 * 326.12107 * 20 19 17 42 42 H 1.08997 * 109.47313 * 210.00327 * 21 19 17 43 43 H 1.09005 * 109.47203 * 330.00465 * 21 19 17 44 44 H 0.96998 * 120.00396 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7194 -0.5771 3.5492 8 1 2.0399 -1.3635 3.8779 9 6 4.1489 -1.1351 3.3523 10 6 4.7814 -0.8582 4.7023 11 6 5.9241 -1.3373 5.3039 12 6 6.2670 -0.9112 6.5747 13 6 5.4588 -0.0048 7.2362 14 6 4.3158 0.4786 6.6345 15 6 3.9659 0.0582 5.3534 16 8 2.9014 0.4079 4.5803 17 6 2.0324 -0.7104 -1.2305 18 8 2.5963 -1.7790 -1.1260 19 7 1.8549 -0.1582 -2.4470 20 6 1.2645 1.1772 -2.5663 21 6 2.2523 -0.8934 -3.6503 22 6 1.0933 -1.7248 -4.1367 23 1 0.1544 -1.7069 -3.6033 24 6 1.2316 -2.5082 -5.2629 25 7 2.3750 -2.5304 -5.9122 26 14 -0.2053 -3.5381 -5.8663 27 1 -1.0173 -2.7431 -6.8221 28 1 0.3084 -4.7546 -6.5456 29 1 -1.0492 -3.9355 -4.7107 30 1 -0.3632 0.6207 0.8192 31 1 -0.3633 0.3991 -0.9470 32 1 -0.3633 -1.0197 0.1280 33 1 4.1244 -2.2051 3.1455 34 1 4.6708 -0.5986 2.5600 35 1 6.5520 -2.0457 4.7840 36 1 7.1623 -1.2858 7.0488 37 1 5.7243 0.3266 8.2293 38 1 3.6904 1.1865 7.1580 39 1 2.0472 1.9301 -2.4732 40 1 0.7800 1.2749 -3.5378 41 1 0.5271 1.3203 -1.7765 42 1 2.5446 -0.1874 -4.4275 43 1 3.0941 -1.5453 -3.4163 44 1 2.4724 -3.0818 -6.7042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792137185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = -125.881143 kcal Electronic energy + Delta-G solvation = -28162.833773 eV Core-core repulsion = 24045.940150 eV Total energy + Delta-G solvation = -4116.893623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71221 -41.71502 -40.52099 -38.52489 -37.69042 -36.73179 -34.91633 -34.06050 -33.07884 -31.10106 -30.82305 -29.64089 -27.70023 -26.47414 -25.73683 -24.29932 -23.36012 -22.73506 -22.11191 -20.51902 -19.42567 -18.70024 -18.60107 -18.34031 -18.02726 -17.54421 -17.27423 -16.92831 -16.65611 -16.30202 -16.17446 -15.25691 -15.13569 -14.98737 -14.60121 -14.56994 -14.37120 -14.22850 -14.03189 -13.91501 -13.73024 -13.63048 -13.33735 -13.24161 -13.07272 -12.88585 -12.70871 -12.63567 -12.41115 -12.34839 -12.20737 -12.06297 -11.80896 -11.72880 -11.65108 -10.67458 -10.64566 -9.89687 -9.54379 -9.24157 -8.23518 -6.38244 0.25954 0.35899 0.73140 0.77469 1.37916 1.40780 1.50017 1.56203 2.05799 2.33277 2.41781 2.73477 3.06772 3.11058 3.19721 3.33435 3.56321 3.68354 3.75487 3.78502 3.85717 4.18983 4.20209 4.26839 4.44555 4.46844 4.51481 4.55527 4.62263 4.62614 4.69110 4.82373 4.91029 5.02913 5.07632 5.10183 5.19788 5.32060 5.39808 5.49960 5.51615 5.55499 5.76654 6.02258 6.08746 6.32722 6.56200 6.70512 7.16433 7.34543 8.84077 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002322 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.916529 B =12057.146779 C =12622.887561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.080 3.920 3 H 0.121 0.879 4 O -0.329 6.329 5 C 0.469 3.531 6 O -0.509 6.509 7 C 0.096 3.904 8 H 0.158 0.842 9 C -0.095 4.095 10 C -0.184 4.184 11 C -0.075 4.075 12 C -0.142 4.142 13 C -0.082 4.082 14 C -0.142 4.142 15 C 0.071 3.929 16 O -0.299 6.299 17 C 0.502 3.498 18 O -0.574 6.574 19 N -0.599 5.599 20 C 0.059 3.941 21 C 0.259 3.741 22 C -0.543 4.543 23 H 0.059 0.941 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.969 3.031 27 H -0.263 1.263 28 H -0.283 1.283 29 H -0.271 1.271 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.001 0.999 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 6.620 25.181 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.245 6.245 5 C 0.311 3.689 6 O -0.397 6.397 7 C 0.039 3.961 8 H 0.175 0.825 9 C -0.132 4.132 10 C -0.184 4.184 11 C -0.093 4.093 12 C -0.160 4.160 13 C -0.100 4.100 14 C -0.161 4.161 15 C 0.027 3.973 16 O -0.214 6.214 17 C 0.289 3.711 18 O -0.454 6.454 19 N -0.331 5.331 20 C -0.082 4.082 21 C 0.138 3.862 22 C -0.582 4.582 23 H 0.077 0.923 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.793 3.207 27 H -0.188 1.188 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.019 0.981 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.508 6.567 25.013 25.982 hybrid contribution -0.504 -0.492 -1.133 1.334 sum 2.004 6.076 23.880 24.722 Atomic orbital electron populations 1.22330 0.89578 1.04614 1.05742 1.22620 0.97675 0.97028 0.80495 0.86181 1.86592 1.76688 1.41634 1.19541 1.23496 0.74297 0.85634 0.85426 1.90672 1.47776 1.17065 1.84138 1.22755 1.00650 0.89450 0.83230 0.82494 1.21707 0.90790 1.05078 0.95627 1.20833 0.98906 1.02813 0.95879 1.20685 0.94197 0.98927 0.95484 1.21501 1.01356 0.98580 0.94530 1.21317 0.92237 0.95516 1.00917 1.20594 1.00314 1.04162 0.90996 1.19916 0.87690 0.96733 0.92959 1.86842 1.47761 1.46333 1.40450 1.20512 0.79894 0.85691 0.85001 1.90659 1.44050 1.23982 1.86690 1.48039 1.60615 1.18844 1.05612 1.22311 0.99309 0.81623 1.04963 1.18878 0.95067 0.91185 0.81057 1.21687 0.98713 1.26894 1.10875 0.92303 1.25872 0.98893 0.97775 0.96633 1.70050 1.26110 1.41103 1.19501 0.85392 0.78788 0.78082 0.78416 1.18842 1.20819 1.19551 0.88799 0.87741 0.91127 0.85462 0.89740 0.83758 0.82361 0.81855 0.84277 0.90997 0.90046 0.88493 0.95210 0.98066 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.14 71.98 0.66 -3.59 16 2 C 0.08 2.56 2.16 29.85 0.06 2.62 16 3 H 0.12 3.48 6.73 -2.39 -0.02 3.46 16 4 O -0.33 -10.58 9.43 -45.08 -0.43 -11.00 16 5 C 0.47 13.54 7.23 71.24 0.51 14.05 16 6 O -0.51 -16.74 15.79 28.15 0.44 -16.29 16 7 C 0.10 2.23 4.16 30.43 0.13 2.36 16 8 H 0.16 2.69 8.14 -2.39 -0.02 2.67 16 9 C -0.10 -2.02 6.64 30.73 0.20 -1.82 16 10 C -0.18 -3.74 6.27 -19.53 -0.12 -3.86 16 11 C -0.08 -1.17 10.03 22.18 0.22 -0.95 16 12 C -0.14 -1.69 10.07 22.31 0.22 -1.47 16 13 C -0.08 -0.99 10.01 22.21 0.22 -0.77 16 14 C -0.14 -2.45 10.06 22.45 0.23 -2.22 16 15 C 0.07 1.60 7.04 22.68 0.16 1.76 16 16 O -0.30 -7.86 10.39 -76.75 -0.80 -8.66 16 17 C 0.50 21.43 7.03 87.66 0.62 22.05 16 18 O -0.57 -30.21 16.08 15.65 0.25 -29.95 16 19 N -0.60 -25.25 2.86 -851.13 -2.43 -27.68 16 20 C 0.06 1.75 9.80 127.77 1.25 3.00 16 21 C 0.26 13.78 5.18 85.63 0.44 14.22 16 22 C -0.54 -30.54 9.39 25.60 0.24 -30.30 16 23 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 24 C 0.01 0.42 5.46 84.66 0.46 0.88 16 25 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 26 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 27 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.44 5.46 -2.39 -0.01 2.43 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.00 7.92 -2.39 -0.02 1.98 16 35 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 41 H 0.10 2.23 4.31 -2.39 -0.01 2.22 16 42 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 43 H 0.00 0.07 7.36 -2.38 -0.02 0.06 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -78.94 375.31 5.89 -73.05 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.02 Total: 13.69 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 5.51 Total: 15.96 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.15 Total: -82.83 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -0.53 Total: -65.91 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.94 5.89 -73.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792137185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.835 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds