Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47007 * 2 1 4 4 O 1.45194 * 109.47409 * 120.00027 * 2 1 3 5 5 C 1.34229 * 116.99990 * 269.99848 * 4 2 1 6 6 O 1.20824 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99961 * 180.02562 * 5 4 2 8 8 H 1.08999 * 110.66752 * 53.23636 * 7 5 4 9 9 C 1.54709 * 110.90322 * 289.91383 * 7 5 4 10 10 C 1.51651 * 101.91634 * 216.28940 * 9 7 5 11 11 C 1.37741 * 132.17097 * 196.01619 * 10 9 7 12 12 C 1.38352 * 119.97941 * 179.65746 * 11 10 9 13 13 C 1.38283 * 119.75985 * 359.52092 * 12 11 10 14 14 C 1.37930 * 120.35765 * 0.40216 * 13 12 11 15 15 C 1.38875 * 107.03861 * 15.50282 * 10 9 7 16 16 O 1.36137 * 111.24347 * 0.90043 * 15 10 9 17 17 C 1.50709 * 109.46968 * 240.00154 * 2 1 3 18 18 O 1.21281 * 119.99593 * 248.56914 * 17 2 1 19 19 N 1.34771 * 119.99876 * 68.56278 * 17 2 1 20 20 C 1.46497 * 120.00222 * 4.58807 * 19 17 2 21 21 C 1.46497 * 119.99866 * 184.58351 * 19 17 2 22 22 C 1.50697 * 109.47265 * 90.00175 * 21 19 17 23 23 H 1.08001 * 119.99589 * 0.02562 * 22 21 19 24 24 C 1.37873 * 120.00235 * 179.97438 * 22 21 19 25 25 N 1.31511 * 120.00131 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47289 * 89.99744 * 26 24 22 28 28 H 1.48498 * 109.47683 * 210.00312 * 26 24 22 29 29 H 1.48504 * 109.47035 * 330.00090 * 26 24 22 30 30 H 1.09002 * 109.46877 * 187.15499 * 1 2 3 31 31 H 1.09003 * 109.46590 * 307.15061 * 1 2 3 32 32 H 1.08992 * 109.47243 * 67.15187 * 1 2 3 33 33 H 1.08994 * 110.94428 * 334.44627 * 9 7 5 34 34 H 1.08999 * 110.93943 * 98.10070 * 9 7 5 35 35 H 1.08009 * 120.00918 * 359.40306 * 11 10 9 36 36 H 1.08001 * 120.11577 * 179.78855 * 12 11 10 37 37 H 1.08008 * 119.81964 * 180.38383 * 13 12 11 38 38 H 1.07998 * 119.87673 * 179.91185 * 14 13 12 39 39 H 1.09007 * 109.47303 * 86.11706 * 20 19 17 40 40 H 1.09000 * 109.47170 * 206.11676 * 20 19 17 41 41 H 1.08999 * 109.47359 * 326.11873 * 20 19 17 42 42 H 1.09002 * 109.47250 * 210.00327 * 21 19 17 43 43 H 1.09004 * 109.47252 * 330.00359 * 21 19 17 44 44 H 0.96998 * 120.00353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2172 0.0641 2.2810 6 8 1.9974 1.2517 2.2505 7 6 2.7195 -0.5770 3.5491 8 1 3.6287 -1.1471 3.3579 9 6 1.6312 -1.4766 4.1814 10 6 1.8625 -1.2532 5.6634 11 6 1.4474 -1.9464 6.7789 12 6 1.8186 -1.5139 8.0395 13 6 2.6145 -0.3909 8.1731 14 6 3.0326 0.3039 7.0574 15 6 2.6576 -0.1211 5.7851 16 8 2.9439 0.4138 4.5664 17 6 2.0323 -0.7104 -1.2306 18 8 2.5963 -1.7790 -1.1260 19 7 1.8547 -0.1583 -2.4471 20 6 1.2644 1.1772 -2.5663 21 6 2.2522 -0.8935 -3.6503 22 6 1.0932 -1.7249 -4.1367 23 1 0.1544 -1.7070 -3.6032 24 6 1.2311 -2.5075 -5.2634 25 7 2.3742 -2.5288 -5.9133 26 14 -0.2057 -3.5374 -5.8668 27 1 -1.0185 -2.7420 -6.8217 28 1 0.3080 -4.7534 -6.5471 29 1 -1.0489 -3.9358 -4.7111 30 1 -0.3633 -1.0197 0.1280 31 1 -0.3632 0.6207 0.8191 32 1 -0.3633 0.3990 -0.9470 33 1 0.6345 -1.1468 3.8885 34 1 1.7872 -2.5221 3.9155 35 1 0.8288 -2.8251 6.6697 36 1 1.4915 -2.0538 8.9158 37 1 2.9100 -0.0560 9.1565 38 1 3.6529 1.1807 7.1708 39 1 2.0471 1.9301 -2.4733 40 1 0.7798 1.2748 -3.5378 41 1 0.5269 1.3203 -1.7765 42 1 2.5444 -0.1874 -4.4276 43 1 3.0940 -1.5453 -3.4163 44 1 2.4714 -3.0797 -6.7058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792137188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = -105.699222 kcal Electronic energy + Delta-G solvation = -28101.883681 eV Core-core repulsion = 23985.865212 eV Total energy + Delta-G solvation = -4116.018469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82134 -40.54386 -38.99130 -37.77153 -36.44756 -34.96963 -33.30705 -32.87472 -31.72871 -30.44167 -30.02432 -27.77363 -26.23337 -25.44581 -24.25866 -22.90519 -22.48986 -22.00222 -20.94506 -18.96902 -18.45477 -17.65558 -17.27731 -16.87237 -16.58678 -16.45225 -16.00711 -15.74966 -15.34904 -14.76115 -14.53014 -14.46174 -14.10517 -13.89849 -13.70374 -13.54611 -13.31909 -13.10154 -12.93929 -12.53024 -12.37190 -12.19267 -12.11458 -12.10216 -11.74658 -11.56706 -11.41821 -11.24731 -11.18881 -10.93986 -10.82153 -10.60886 -10.56003 -10.20906 -9.69552 -9.27897 -8.98396 -8.54502 -8.48901 -7.77176 -6.09691 -4.15176 0.89133 0.99519 1.78231 1.95062 3.02723 3.17243 3.26753 3.33856 3.35736 3.38153 3.73487 3.94814 4.12428 4.38922 4.44117 4.47992 4.61484 4.69557 4.76827 4.87284 4.93332 5.01268 5.02946 5.16713 5.24848 5.27567 5.36115 5.40759 5.59306 5.62524 5.67115 5.83006 5.92175 6.00752 6.01331 6.09710 6.17794 6.21923 6.24157 6.75472 6.93822 7.35344 7.41192 7.51983 7.85921 8.15446 8.23627 8.78441 8.93693 9.49990 10.98419 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.002255 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.870401 B =12414.415560 C =12940.770410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.317 6.317 5 C 0.466 3.534 6 O -0.486 6.486 7 C 0.094 3.906 8 H 0.132 0.868 9 C -0.095 4.095 10 C -0.171 4.171 11 C -0.066 4.066 12 C -0.147 4.147 13 C -0.085 4.085 14 C -0.133 4.133 15 C 0.105 3.895 16 O -0.277 6.277 17 C 0.510 3.490 18 O -0.520 6.520 19 N -0.595 5.595 20 C 0.066 3.934 21 C 0.246 3.754 22 C -0.530 4.530 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 5.538 25.092 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.233 6.233 5 C 0.306 3.694 6 O -0.372 6.372 7 C 0.036 3.964 8 H 0.149 0.851 9 C -0.132 4.132 10 C -0.172 4.172 11 C -0.084 4.084 12 C -0.166 4.166 13 C -0.103 4.103 14 C -0.152 4.152 15 C 0.060 3.940 16 O -0.190 6.190 17 C 0.294 3.706 18 O -0.396 6.396 19 N -0.328 5.328 20 C -0.077 4.077 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.756 5.468 24.828 25.484 hybrid contribution -0.874 -0.416 -0.627 1.154 sum -2.630 5.053 24.201 24.862 Atomic orbital electron populations 1.22320 0.91998 1.04311 1.04254 1.22734 0.96097 0.97537 0.82308 0.87679 1.86583 1.76448 1.41038 1.19202 1.22915 0.75269 0.85926 0.85253 1.90694 1.46525 1.16108 1.83858 1.22603 1.01017 0.87667 0.85073 0.85115 1.21699 0.99177 1.01922 0.90418 1.20715 1.02271 0.98930 0.95308 1.20341 0.98486 0.98882 0.90725 1.21075 1.00566 0.97915 0.97007 1.20907 0.96708 0.94826 0.97849 1.20276 1.03755 1.02726 0.88423 1.19577 0.94861 0.93004 0.86538 1.86913 1.83824 1.35841 1.12441 1.19702 0.80972 0.86147 0.83766 1.90702 1.41682 1.21442 1.85731 1.48060 1.60690 1.17270 1.06797 1.21993 0.97922 0.84164 1.03661 1.19379 0.96828 0.91660 0.79421 1.21409 0.98381 1.26413 1.10638 0.92342 1.24942 0.96109 0.96608 0.96445 1.69927 1.24056 1.40245 1.18942 0.86476 0.82207 0.79812 0.78802 1.20603 1.21041 1.19870 0.90472 0.91218 0.88725 0.88378 0.86936 0.85386 0.85275 0.84961 0.85156 0.93335 0.90037 0.91678 0.94584 0.93550 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.14 37.16 0.34 -2.00 16 2 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 3 H 0.11 1.60 6.73 -51.93 -0.35 1.25 16 4 O -0.32 -5.12 9.43 -45.86 -0.43 -5.55 16 5 C 0.47 6.76 7.24 36.01 0.26 7.02 16 6 O -0.49 -8.08 15.79 -25.24 -0.40 -8.48 16 7 C 0.09 1.09 4.15 -26.98 -0.11 0.98 16 8 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 9 C -0.10 -0.91 6.64 -26.51 -0.18 -1.08 16 10 C -0.17 -1.68 6.27 -104.10 -0.65 -2.33 16 11 C -0.07 -0.52 10.03 -39.72 -0.40 -0.92 16 12 C -0.15 -1.02 10.07 -39.52 -0.40 -1.41 16 13 C -0.08 -0.60 10.01 -39.68 -0.40 -1.00 16 14 C -0.13 -1.20 10.06 -39.30 -0.40 -1.60 16 15 C 0.11 1.17 7.04 -38.96 -0.27 0.90 16 16 O -0.28 -3.62 10.39 -39.27 -0.41 -4.02 16 17 C 0.51 10.73 7.03 -10.98 -0.08 10.65 16 18 O -0.52 -13.19 16.08 -13.95 -0.22 -13.42 16 19 N -0.59 -12.43 2.86 -182.95 -0.52 -12.96 16 20 C 0.07 1.02 9.80 59.85 0.59 1.61 16 21 C 0.25 6.32 5.18 -5.20 -0.03 6.29 16 22 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 23 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 26 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.22 5.46 -51.93 -0.28 0.94 16 33 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 41 H 0.06 0.83 4.31 -51.93 -0.22 0.61 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -35.20 375.33 -8.65 -43.85 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.84 Total: -0.95 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.20 Total: 4.85 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.21 Total: -38.38 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.46 Total: -31.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.20 -8.65 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792137188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.848 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds