Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47007 * 2 1 4 4 O 1.45194 * 109.47409 * 120.00027 * 2 1 3 5 5 C 1.34229 * 116.99990 * 269.99848 * 4 2 1 6 6 O 1.20824 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99961 * 180.02562 * 5 4 2 8 8 H 1.08999 * 110.66752 * 53.23636 * 7 5 4 9 9 C 1.54709 * 110.90322 * 289.91383 * 7 5 4 10 10 C 1.51651 * 101.91634 * 216.28940 * 9 7 5 11 11 C 1.37741 * 132.17097 * 196.01619 * 10 9 7 12 12 C 1.38352 * 119.97941 * 179.65746 * 11 10 9 13 13 C 1.38283 * 119.75985 * 359.52092 * 12 11 10 14 14 C 1.37930 * 120.35765 * 0.40216 * 13 12 11 15 15 C 1.38875 * 107.03861 * 15.50282 * 10 9 7 16 16 O 1.36137 * 111.24347 * 0.90043 * 15 10 9 17 17 C 1.50709 * 109.46968 * 240.00154 * 2 1 3 18 18 O 1.21281 * 119.99593 * 248.56914 * 17 2 1 19 19 N 1.34771 * 119.99876 * 68.56278 * 17 2 1 20 20 C 1.46497 * 120.00222 * 4.58807 * 19 17 2 21 21 C 1.46497 * 119.99866 * 184.58351 * 19 17 2 22 22 C 1.50697 * 109.47265 * 90.00175 * 21 19 17 23 23 H 1.08001 * 119.99589 * 0.02562 * 22 21 19 24 24 C 1.37873 * 120.00235 * 179.97438 * 22 21 19 25 25 N 1.31511 * 120.00131 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47289 * 89.99744 * 26 24 22 28 28 H 1.48498 * 109.47683 * 210.00312 * 26 24 22 29 29 H 1.48504 * 109.47035 * 330.00090 * 26 24 22 30 30 H 1.09002 * 109.46877 * 187.15499 * 1 2 3 31 31 H 1.09003 * 109.46590 * 307.15061 * 1 2 3 32 32 H 1.08992 * 109.47243 * 67.15187 * 1 2 3 33 33 H 1.08994 * 110.94428 * 334.44627 * 9 7 5 34 34 H 1.08999 * 110.93943 * 98.10070 * 9 7 5 35 35 H 1.08009 * 120.00918 * 359.40306 * 11 10 9 36 36 H 1.08001 * 120.11577 * 179.78855 * 12 11 10 37 37 H 1.08008 * 119.81964 * 180.38383 * 13 12 11 38 38 H 1.07998 * 119.87673 * 179.91185 * 14 13 12 39 39 H 1.09007 * 109.47303 * 86.11706 * 20 19 17 40 40 H 1.09000 * 109.47170 * 206.11676 * 20 19 17 41 41 H 1.08999 * 109.47359 * 326.11873 * 20 19 17 42 42 H 1.09002 * 109.47250 * 210.00327 * 21 19 17 43 43 H 1.09004 * 109.47252 * 330.00359 * 21 19 17 44 44 H 0.96998 * 120.00353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2172 0.0641 2.2810 6 8 1.9974 1.2517 2.2505 7 6 2.7195 -0.5770 3.5491 8 1 3.6287 -1.1471 3.3579 9 6 1.6312 -1.4766 4.1814 10 6 1.8625 -1.2532 5.6634 11 6 1.4474 -1.9464 6.7789 12 6 1.8186 -1.5139 8.0395 13 6 2.6145 -0.3909 8.1731 14 6 3.0326 0.3039 7.0574 15 6 2.6576 -0.1211 5.7851 16 8 2.9439 0.4138 4.5664 17 6 2.0323 -0.7104 -1.2306 18 8 2.5963 -1.7790 -1.1260 19 7 1.8547 -0.1583 -2.4471 20 6 1.2644 1.1772 -2.5663 21 6 2.2522 -0.8935 -3.6503 22 6 1.0932 -1.7249 -4.1367 23 1 0.1544 -1.7070 -3.6032 24 6 1.2311 -2.5075 -5.2634 25 7 2.3742 -2.5288 -5.9133 26 14 -0.2057 -3.5374 -5.8668 27 1 -1.0185 -2.7420 -6.8217 28 1 0.3080 -4.7534 -6.5471 29 1 -1.0489 -3.9358 -4.7111 30 1 -0.3633 -1.0197 0.1280 31 1 -0.3632 0.6207 0.8191 32 1 -0.3633 0.3990 -0.9470 33 1 0.6345 -1.1468 3.8885 34 1 1.7872 -2.5221 3.9155 35 1 0.8288 -2.8251 6.6697 36 1 1.4915 -2.0538 8.9158 37 1 2.9100 -0.0560 9.1565 38 1 3.6529 1.1807 7.1708 39 1 2.0471 1.9301 -2.4733 40 1 0.7798 1.2748 -3.5378 41 1 0.5269 1.3203 -1.7765 42 1 2.5444 -0.1874 -4.4276 43 1 3.0940 -1.5453 -3.4163 44 1 2.4714 -3.0797 -6.7058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792137188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = -126.045004 kcal Electronic energy + Delta-G solvation = -28102.765940 eV Core-core repulsion = 23985.865212 eV Total energy + Delta-G solvation = -4116.900728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.70888 -41.71357 -40.52113 -38.52008 -37.68825 -36.73410 -34.91433 -34.03694 -33.09350 -31.08967 -30.81886 -29.64411 -27.69740 -26.43248 -25.76957 -24.31472 -23.35620 -22.70086 -22.09337 -20.52294 -19.52744 -18.69743 -18.60353 -18.23612 -17.92493 -17.56315 -17.34442 -16.97495 -16.62708 -16.28052 -16.17939 -15.22001 -15.18815 -14.99346 -14.65151 -14.48804 -14.32175 -14.20714 -14.07329 -13.95181 -13.71251 -13.63137 -13.34069 -13.15895 -13.09338 -12.90847 -12.69478 -12.63289 -12.41067 -12.34343 -12.20631 -12.06189 -11.80163 -11.72684 -11.65012 -10.67712 -10.64476 -9.88409 -9.54456 -9.23241 -8.23312 -6.38148 0.27097 0.36724 0.67429 0.84061 1.38077 1.41030 1.50249 1.56185 2.05163 2.34446 2.42504 2.74593 3.06944 3.12511 3.18617 3.33779 3.56828 3.69724 3.74398 3.80015 3.87564 4.19296 4.20493 4.28080 4.46313 4.47328 4.52455 4.55270 4.62624 4.63271 4.69831 4.82378 4.90985 5.03928 5.07727 5.10079 5.19845 5.33017 5.40552 5.50021 5.52501 5.56794 5.76706 6.02330 6.09727 6.32927 6.56192 6.70589 7.16443 7.34616 8.84299 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.002255 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.870401 B =12414.415560 C =12940.770410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.121 0.879 4 O -0.329 6.329 5 C 0.470 3.530 6 O -0.509 6.509 7 C 0.092 3.908 8 H 0.146 0.854 9 C -0.090 4.090 10 C -0.182 4.182 11 C -0.072 4.072 12 C -0.142 4.142 13 C -0.083 4.083 14 C -0.145 4.145 15 C 0.069 3.931 16 O -0.302 6.302 17 C 0.502 3.498 18 O -0.576 6.576 19 N -0.599 5.599 20 C 0.060 3.940 21 C 0.259 3.741 22 C -0.543 4.543 23 H 0.059 0.941 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.970 3.030 27 H -0.263 1.263 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.001 0.999 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 5.580 27.193 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.245 6.245 5 C 0.312 3.688 6 O -0.396 6.396 7 C 0.035 3.965 8 H 0.164 0.836 9 C -0.127 4.127 10 C -0.182 4.182 11 C -0.090 4.090 12 C -0.160 4.160 13 C -0.101 4.101 14 C -0.163 4.163 15 C 0.025 3.975 16 O -0.217 6.217 17 C 0.289 3.711 18 O -0.455 6.455 19 N -0.331 5.331 20 C -0.082 4.082 21 C 0.138 3.862 22 C -0.581 4.581 23 H 0.077 0.923 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.794 3.206 27 H -0.188 1.188 28 H -0.208 1.208 29 H -0.195 1.195 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.019 0.981 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.835 5.561 26.947 27.781 hybrid contribution -0.171 -0.391 -1.172 1.248 sum -4.006 5.170 25.775 26.592 Atomic orbital electron populations 1.22324 0.89520 1.04642 1.05717 1.22618 0.97695 0.97028 0.80449 0.86158 1.86589 1.76727 1.41621 1.19531 1.23457 0.74295 0.85623 0.85377 1.90668 1.47726 1.17076 1.84179 1.22750 1.02304 0.87671 0.83784 0.83650 1.21710 0.98265 1.02292 0.90424 1.20849 1.02641 0.98987 0.95755 1.20693 0.98439 0.99337 0.90543 1.21509 0.99318 0.97538 0.97630 1.21302 0.95935 0.94451 0.98417 1.20585 1.04055 1.03320 0.88388 1.19933 0.96813 0.94376 0.86417 1.86855 1.84477 1.36896 1.13461 1.20533 0.79882 0.85687 0.85035 1.90664 1.44089 1.24057 1.86707 1.48037 1.60593 1.18852 1.05601 1.22313 0.99312 0.81601 1.04970 1.18879 0.95081 0.91195 0.81065 1.21683 0.98709 1.26912 1.10845 0.92259 1.25882 0.98927 0.97797 0.96638 1.70053 1.26152 1.41120 1.19453 0.85381 0.78752 0.78053 0.78421 1.18841 1.20848 1.19491 0.91026 0.88870 0.87743 0.88488 0.85203 0.83290 0.82308 0.82058 0.84651 0.90997 0.90040 0.88464 0.95211 0.98118 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 9.14 71.98 0.66 -3.52 16 2 C 0.08 2.56 2.16 29.85 0.06 2.63 16 3 H 0.12 3.49 6.73 -2.38 -0.02 3.47 16 4 O -0.33 -10.59 9.43 -45.09 -0.43 -11.01 16 5 C 0.47 13.59 7.24 71.24 0.52 14.10 16 6 O -0.51 -16.76 15.79 28.17 0.44 -16.31 16 7 C 0.09 2.15 4.15 30.43 0.13 2.28 16 8 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 9 C -0.09 -1.65 6.64 30.73 0.20 -1.45 16 10 C -0.18 -3.37 6.27 -19.53 -0.12 -3.49 16 11 C -0.07 -0.97 10.03 22.18 0.22 -0.75 16 12 C -0.14 -1.52 10.07 22.31 0.22 -1.29 16 13 C -0.08 -0.97 10.01 22.21 0.22 -0.75 16 14 C -0.14 -2.49 10.06 22.45 0.23 -2.27 16 15 C 0.07 1.51 7.04 22.68 0.16 1.67 16 16 O -0.30 -8.04 10.39 -76.86 -0.80 -8.84 16 17 C 0.50 21.50 7.03 87.66 0.62 22.11 16 18 O -0.58 -30.50 16.08 15.62 0.25 -30.25 16 19 N -0.60 -25.31 2.86 -851.14 -2.43 -27.74 16 20 C 0.06 1.75 9.80 127.77 1.25 3.00 16 21 C 0.26 13.80 5.18 85.63 0.44 14.24 16 22 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 23 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 24 C 0.01 0.38 5.46 84.65 0.46 0.84 16 25 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 26 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 27 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.42 5.46 -2.39 -0.01 2.40 16 33 H 0.10 1.76 7.92 -2.39 -0.02 1.74 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 41 H 0.10 2.23 4.31 -2.39 -0.01 2.22 16 42 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 43 H 0.00 0.04 7.36 -2.39 -0.02 0.02 16 44 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -79.58 375.33 5.89 -73.69 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.02 Total: 12.65 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.52 Total: 17.04 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.15 Total: -82.99 kcal Atomic # 8 Polarization: -65.88 SS G_CDS: -0.53 Total: -66.41 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.58 5.89 -73.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792137188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.353 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds