Wall clock time and date at job start Tue Mar 31 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46972 * 2 1 4 4 C 1.46897 * 111.00212 * 304.07593 * 3 2 1 5 5 C 1.50702 * 109.47096 * 286.96202 * 4 3 2 6 6 C 1.38224 * 119.61504 * 95.16522 * 5 4 3 7 7 C 1.38628 * 119.15976 * 179.79048 * 6 5 4 8 8 C 1.38681 * 118.42053 * 0.46928 * 7 6 5 9 9 C 1.38182 * 119.15647 * 359.50616 * 8 7 6 10 10 N 1.31852 * 119.61613 * 275.18237 * 5 4 3 11 11 C 1.46899 * 110.99678 * 68.03548 * 3 2 1 12 12 N 1.46497 * 109.47381 * 66.04431 * 11 3 2 13 13 N 1.40161 * 126.14696 * 90.02486 * 12 11 3 14 14 C 1.32239 * 107.76056 * 179.97438 * 13 12 11 15 15 C 1.40116 * 125.92716 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00327 * 179.97438 * 15 14 13 17 17 C 1.40036 * 120.00101 * 359.97167 * 15 14 13 18 18 N 1.30797 * 120.00225 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46974 * 120.00494 * 19 17 15 22 22 H 1.48500 * 109.47478 * 240.00072 * 19 17 15 23 23 N 1.38496 * 108.14600 * 359.97438 * 14 13 12 24 24 C 1.46501 * 125.83628 * 180.02562 * 23 14 13 25 25 C 1.34727 * 108.32844 * 359.73742 * 23 14 13 26 26 S 1.71209 * 125.97223 * 180.26350 * 25 23 14 27 27 H 1.08994 * 109.47250 * 307.00801 * 1 2 3 28 28 H 1.08996 * 109.47079 * 67.00917 * 1 2 3 29 29 H 1.09001 * 109.46704 * 187.00881 * 1 2 3 30 30 H 1.09005 * 109.47045 * 239.99894 * 2 1 3 31 31 H 1.08997 * 109.47203 * 120.00100 * 2 1 3 32 32 H 1.08999 * 109.47194 * 166.95727 * 4 3 2 33 33 H 1.08999 * 109.46795 * 46.96231 * 4 3 2 34 34 H 1.07997 * 120.42772 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.79379 * 180.23323 * 7 6 5 36 36 H 1.07993 * 120.42356 * 179.78736 * 8 7 6 37 37 H 1.08005 * 119.61124 * 180.24885 * 9 8 7 38 38 H 1.09002 * 109.46907 * 186.04553 * 11 3 2 39 39 H 1.08996 * 109.46827 * 306.03707 * 11 3 2 40 40 H 0.97004 * 120.00568 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47053 * 89.99748 * 24 23 14 42 42 H 1.08999 * 109.47112 * 209.99946 * 24 23 14 43 43 H 1.08999 * 109.46895 * 330.00030 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4707 2.1375 -1.1359 5 6 2.1368 1.6825 -2.4089 6 6 1.5334 0.7121 -3.1864 7 6 2.1522 0.3037 -4.3578 8 6 3.3653 0.8823 -4.6997 9 6 3.9079 1.8472 -3.8727 10 7 3.2886 2.2146 -2.7677 11 6 1.7115 2.0523 1.2719 12 7 2.4673 1.4154 2.3532 13 7 3.7480 1.7784 2.7920 14 6 4.0804 0.9669 3.7818 15 6 5.2841 0.9944 4.4984 16 1 5.4560 0.2832 5.2928 17 6 6.2643 1.9439 4.1846 18 7 6.0561 2.8055 3.2228 19 14 7.8688 1.9809 5.1404 20 1 7.8569 0.9102 6.1692 21 1 9.0047 1.7599 4.2096 22 1 8.0207 3.3018 5.8018 23 7 3.0318 0.0860 3.9880 24 6 2.9910 -0.9786 4.9936 25 6 2.0530 0.3795 3.1099 26 16 0.5481 -0.4258 2.9752 27 1 -0.3633 0.6185 0.8206 28 1 -0.3633 0.4014 -0.9460 29 1 -0.3633 -1.0200 0.1254 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6549 3.2018 -0.9897 33 1 0.3973 1.9606 -1.2042 34 1 0.5902 0.2795 -2.8869 35 1 1.7023 -0.4499 -4.9871 36 1 3.8772 0.5858 -5.6032 37 1 4.8503 2.3055 -4.1340 38 1 1.9878 3.1046 1.2064 39 1 0.6441 1.9690 1.4765 40 1 6.7350 3.4635 3.0056 41 1 2.5646 -0.5890 5.9180 42 1 2.3758 -1.8006 4.6277 43 1 4.0024 -1.3381 5.1832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794630233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:49 Heat of formation + Delta-G solvation = 134.117541 kcal Electronic energy + Delta-G solvation = -26642.251930 eV Core-core repulsion = 23043.971070 eV Total energy + Delta-G solvation = -3598.280860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91858 -40.20451 -37.77387 -34.33296 -33.86067 -32.52831 -31.79804 -30.69007 -29.79242 -27.88713 -26.56357 -25.88655 -24.54268 -23.45729 -22.57982 -21.55839 -20.89009 -19.94729 -17.72396 -16.83445 -16.65222 -16.35135 -16.06599 -15.72267 -15.49339 -15.38190 -14.81022 -14.67641 -14.47941 -13.66681 -13.51717 -13.36059 -13.26979 -12.88547 -12.47164 -12.25564 -12.18605 -11.78257 -11.75025 -11.66873 -11.53821 -11.50819 -11.10374 -10.99248 -10.67809 -10.52983 -10.27107 -10.03541 -9.83449 -9.50516 -9.33151 -9.21249 -8.98267 -8.84492 -8.00134 -7.00290 -6.76408 -6.59308 -5.10733 1.10335 1.31925 2.31243 2.55688 2.80034 2.93453 2.98591 3.33383 3.56306 3.66856 3.77600 4.10756 4.32978 4.44047 4.76252 4.83504 4.87927 5.03741 5.13763 5.21050 5.39365 5.42438 5.51886 5.57632 5.69903 5.71682 5.76752 5.84528 5.86633 5.95885 6.08247 6.12438 6.15749 6.27498 6.33269 6.54510 6.62135 6.71433 6.83352 6.88160 7.01305 7.19819 7.30007 7.60599 7.80307 8.12477 8.25781 8.38290 9.17444 9.97256 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.004179 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.154251 B = 6698.497302 C = 8650.519092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.103 3.897 5 C 0.150 3.850 6 C -0.166 4.166 7 C -0.079 4.079 8 C -0.181 4.181 9 C 0.100 3.900 10 N -0.462 5.462 11 C 0.323 3.677 12 N -0.367 5.367 13 N -0.327 5.327 14 C 0.370 3.630 15 C -0.439 4.439 16 H 0.097 0.903 17 C 0.076 3.924 18 N -0.733 5.733 19 Si 0.927 3.073 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.514 5.514 24 C 0.100 3.900 25 C 0.461 3.539 26 S -0.710 6.710 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.285 0.715 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -1.359 -9.575 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.079 4.079 3 N -0.262 5.262 4 C -0.026 4.026 5 C 0.011 3.989 6 C -0.186 4.186 7 C -0.105 4.105 8 C -0.201 4.201 9 C -0.058 4.058 10 N -0.171 5.171 11 C 0.112 3.888 12 N -0.152 5.152 13 N -0.158 5.158 14 C 0.121 3.879 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.151 4.151 18 N -0.357 5.357 19 Si 0.751 3.249 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.215 5.215 24 C -0.043 4.043 25 C 0.091 3.909 26 S -0.586 6.586 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.307 -0.145 -9.924 10.190 hybrid contribution 0.237 -0.951 0.353 1.042 sum -2.069 -1.096 -9.572 9.854 Atomic orbital electron populations 1.22355 0.97140 1.03409 1.00071 1.22332 0.93936 0.88718 1.02915 1.61957 1.60026 1.03023 1.01195 1.20882 0.96073 0.98927 0.86682 1.21048 0.90724 0.92276 0.94868 1.22030 1.02008 0.98697 0.95913 1.21529 0.94788 0.98150 0.96002 1.22114 0.97170 0.99125 1.01716 1.22782 0.99018 0.94195 0.89764 1.67529 1.07750 1.26703 1.15148 1.21733 0.93177 0.94704 0.79219 1.49143 1.15346 1.24503 1.26224 1.79481 0.92181 1.24999 1.19131 1.21367 0.89003 0.84724 0.92773 1.18376 0.95984 1.16738 1.16965 0.88499 1.25832 1.00374 0.93972 0.94926 1.69887 1.33706 1.11004 1.21112 0.85932 0.79803 0.79431 0.79778 1.18223 1.19511 1.19500 1.45988 1.14343 1.30394 1.30749 1.21750 1.03544 0.89158 0.89820 1.22971 0.92572 0.88861 0.86504 1.92692 1.10523 1.66523 1.88833 0.90375 0.94744 0.92117 0.92252 0.89276 0.89035 0.91819 0.84940 0.85113 0.85125 0.82954 0.87862 0.90307 0.90341 0.91515 0.89262 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 7.75 37.16 0.29 -2.41 16 2 C 0.05 0.88 5.28 -3.82 -0.02 0.86 16 3 N -0.54 -9.73 4.79 -239.98 -1.15 -10.88 16 4 C 0.10 1.51 5.10 -4.98 -0.03 1.49 16 5 C 0.15 2.22 5.86 -82.59 -0.48 1.73 16 6 C -0.17 -2.06 8.65 -39.44 -0.34 -2.40 16 7 C -0.08 -0.84 10.18 -39.27 -0.40 -1.24 16 8 C -0.18 -1.94 10.11 -39.44 -0.40 -2.33 16 9 C 0.10 1.29 11.18 -17.55 -0.20 1.09 16 10 N -0.46 -7.42 10.27 -9.47 -0.10 -7.51 16 11 C 0.32 6.24 5.84 -63.32 -0.37 5.87 16 12 N -0.37 -8.51 3.57 -65.05 -0.23 -8.74 16 13 N -0.33 -8.51 10.77 31.21 0.34 -8.18 16 14 C 0.37 9.24 7.50 -155.28 -1.16 8.08 16 15 C -0.44 -10.39 8.98 -38.20 -0.34 -10.73 16 16 H 0.10 2.06 7.11 -52.49 -0.37 1.69 16 17 C 0.08 1.74 5.50 -17.32 -0.10 1.65 16 18 N -0.73 -18.20 11.90 55.55 0.66 -17.54 16 19 Si 0.93 16.92 29.56 -169.99 -5.02 11.90 16 20 H -0.26 -4.55 7.11 56.52 0.40 -4.14 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 23 N -0.51 -11.64 3.17 -124.66 -0.39 -12.04 16 24 C 0.10 1.79 10.64 59.85 0.64 2.43 16 25 C 0.46 10.72 6.59 -86.94 -0.57 10.14 16 26 S -0.71 -16.24 24.85 -107.50 -2.67 -18.91 16 27 H 0.08 1.37 4.91 -51.93 -0.25 1.12 16 28 H 0.03 0.45 5.60 -51.93 -0.29 0.16 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.04 6.88 -51.93 -0.36 0.68 16 31 H 0.09 1.95 4.96 -51.93 -0.26 1.69 16 32 H 0.09 1.31 7.79 -51.93 -0.40 0.90 16 33 H 0.06 0.80 5.62 -51.93 -0.29 0.51 16 34 H 0.13 1.43 7.18 -52.49 -0.38 1.06 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.10 1.92 7.85 -51.93 -0.41 1.51 16 39 H 0.08 1.46 5.70 -51.93 -0.30 1.16 16 40 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.56 7.62 -51.93 -0.40 1.16 16 43 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -31.19 356.64 -12.02 -43.21 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.33 Total: 9.11 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: -3.49 Total: 14.21 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.88 Total: -64.89 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.02 Total: 11.90 kcal Atomic # 16 Polarization: -16.24 SS G_CDS: -2.67 Total: -18.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.19 -12.02 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794630233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.323 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds