Wall clock time and date at job start Tue Mar 31 2020 18:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46972 * 2 1 4 4 C 1.46897 * 111.00212 * 304.07593 * 3 2 1 5 5 C 1.50702 * 109.47096 * 286.96202 * 4 3 2 6 6 C 1.38224 * 119.61504 * 95.16522 * 5 4 3 7 7 C 1.38628 * 119.15976 * 179.79048 * 6 5 4 8 8 C 1.38681 * 118.42053 * 0.46928 * 7 6 5 9 9 C 1.38182 * 119.15647 * 359.50616 * 8 7 6 10 10 N 1.31852 * 119.61613 * 275.18237 * 5 4 3 11 11 C 1.46899 * 110.99678 * 68.03548 * 3 2 1 12 12 N 1.46497 * 109.47381 * 66.04431 * 11 3 2 13 13 N 1.40161 * 126.14696 * 90.02486 * 12 11 3 14 14 C 1.32239 * 107.76056 * 179.97438 * 13 12 11 15 15 C 1.40116 * 125.92716 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00327 * 179.97438 * 15 14 13 17 17 C 1.40036 * 120.00101 * 359.97167 * 15 14 13 18 18 N 1.30797 * 120.00225 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46974 * 120.00494 * 19 17 15 22 22 H 1.48500 * 109.47478 * 240.00072 * 19 17 15 23 23 N 1.38496 * 108.14600 * 359.97438 * 14 13 12 24 24 C 1.46501 * 125.83628 * 180.02562 * 23 14 13 25 25 C 1.34727 * 108.32844 * 359.73742 * 23 14 13 26 26 S 1.71209 * 125.97223 * 180.26350 * 25 23 14 27 27 H 1.08994 * 109.47250 * 307.00801 * 1 2 3 28 28 H 1.08996 * 109.47079 * 67.00917 * 1 2 3 29 29 H 1.09001 * 109.46704 * 187.00881 * 1 2 3 30 30 H 1.09005 * 109.47045 * 239.99894 * 2 1 3 31 31 H 1.08997 * 109.47203 * 120.00100 * 2 1 3 32 32 H 1.08999 * 109.47194 * 166.95727 * 4 3 2 33 33 H 1.08999 * 109.46795 * 46.96231 * 4 3 2 34 34 H 1.07997 * 120.42772 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.79379 * 180.23323 * 7 6 5 36 36 H 1.07993 * 120.42356 * 179.78736 * 8 7 6 37 37 H 1.08005 * 119.61124 * 180.24885 * 9 8 7 38 38 H 1.09002 * 109.46907 * 186.04553 * 11 3 2 39 39 H 1.08996 * 109.46827 * 306.03707 * 11 3 2 40 40 H 0.97004 * 120.00568 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47053 * 89.99748 * 24 23 14 42 42 H 1.08999 * 109.47112 * 209.99946 * 24 23 14 43 43 H 1.08999 * 109.46895 * 330.00030 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4707 2.1375 -1.1359 5 6 2.1368 1.6825 -2.4089 6 6 1.5334 0.7121 -3.1864 7 6 2.1522 0.3037 -4.3578 8 6 3.3653 0.8823 -4.6997 9 6 3.9079 1.8472 -3.8727 10 7 3.2886 2.2146 -2.7677 11 6 1.7115 2.0523 1.2719 12 7 2.4673 1.4154 2.3532 13 7 3.7480 1.7784 2.7920 14 6 4.0804 0.9669 3.7818 15 6 5.2841 0.9944 4.4984 16 1 5.4560 0.2832 5.2928 17 6 6.2643 1.9439 4.1846 18 7 6.0561 2.8055 3.2228 19 14 7.8688 1.9809 5.1404 20 1 7.8569 0.9102 6.1692 21 1 9.0047 1.7599 4.2096 22 1 8.0207 3.3018 5.8018 23 7 3.0318 0.0860 3.9880 24 6 2.9910 -0.9786 4.9936 25 6 2.0530 0.3795 3.1099 26 16 0.5481 -0.4258 2.9752 27 1 -0.3633 0.6185 0.8206 28 1 -0.3633 0.4014 -0.9460 29 1 -0.3633 -1.0200 0.1254 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6549 3.2018 -0.9897 33 1 0.3973 1.9606 -1.2042 34 1 0.5902 0.2795 -2.8869 35 1 1.7023 -0.4499 -4.9871 36 1 3.8772 0.5858 -5.6032 37 1 4.8503 2.3055 -4.1340 38 1 1.9878 3.1046 1.2064 39 1 0.6441 1.9690 1.4765 40 1 6.7350 3.4635 3.0056 41 1 2.5646 -0.5890 5.9180 42 1 2.3758 -1.8006 4.6277 43 1 4.0024 -1.3381 5.1832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794630233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:48 Heat of formation + Delta-G solvation = 115.934180 kcal Electronic energy + Delta-G solvation = -26643.040420 eV Core-core repulsion = 23043.971070 eV Total energy + Delta-G solvation = -3599.069350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.65801 -41.21566 -39.13756 -36.01226 -35.55590 -33.49581 -32.98161 -32.28340 -31.21877 -29.36504 -28.26925 -27.18978 -26.03937 -24.39580 -23.93502 -23.00896 -22.64757 -21.30281 -19.45518 -18.36392 -17.80477 -17.64917 -17.43665 -17.30138 -16.80299 -16.53706 -16.32116 -16.14505 -16.04323 -15.08066 -14.74706 -14.58953 -14.34756 -13.95357 -13.86261 -13.71224 -13.53454 -13.42064 -13.22357 -13.07143 -12.87458 -12.72913 -12.58549 -12.43904 -12.32128 -11.95023 -11.76691 -11.63425 -11.33333 -10.89245 -10.76553 -10.64895 -10.30864 -9.95933 -9.36786 -8.74664 -8.56122 -8.38358 -6.95772 0.14357 0.41055 0.57703 0.82725 1.28033 1.43860 1.61333 1.68109 1.86617 2.12503 2.41017 2.70201 3.10052 3.16249 3.34417 3.61118 3.83541 4.01037 4.04420 4.05780 4.13252 4.20648 4.26707 4.35790 4.41099 4.45410 4.54182 4.59156 4.62873 4.70925 4.76444 4.86981 4.90093 5.04501 5.10375 5.15175 5.23698 5.27798 5.28979 5.52151 5.72298 5.82486 5.88943 5.93324 6.16065 6.50131 6.58082 7.15474 7.35999 8.26309 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.004179 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.154251 B = 6698.497302 C = 8650.519092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 N -0.552 5.552 4 C 0.106 3.894 5 C 0.123 3.877 6 C -0.169 4.169 7 C -0.077 4.077 8 C -0.171 4.171 9 C 0.078 3.922 10 N -0.508 5.508 11 C 0.322 3.678 12 N -0.369 5.369 13 N -0.366 5.366 14 C 0.351 3.649 15 C -0.454 4.454 16 H 0.119 0.881 17 C 0.034 3.966 18 N -0.776 5.776 19 Si 1.006 2.994 20 H -0.242 1.242 21 H -0.270 1.270 22 H -0.267 1.267 23 N -0.518 5.518 24 C 0.096 3.904 25 C 0.450 3.550 26 S -0.715 6.715 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.290 0.710 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -2.473 -10.347 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.066 4.066 3 N -0.277 5.277 4 C -0.021 4.021 5 C -0.015 4.015 6 C -0.189 4.189 7 C -0.103 4.103 8 C -0.191 4.191 9 C -0.078 4.078 10 N -0.218 5.218 11 C 0.111 3.889 12 N -0.155 5.155 13 N -0.198 5.198 14 C 0.102 3.898 15 C -0.496 4.496 16 H 0.136 0.864 17 C -0.189 4.189 18 N -0.401 5.401 19 Si 0.825 3.175 20 H -0.165 1.165 21 H -0.195 1.195 22 H -0.192 1.192 23 N -0.219 5.219 24 C -0.046 4.046 25 C 0.080 3.920 26 S -0.591 6.591 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.924 -1.278 -10.703 10.950 hybrid contribution 0.110 -0.610 0.488 0.789 sum -1.814 -1.888 -10.215 10.546 Atomic orbital electron populations 1.22162 0.95361 1.02795 1.01033 1.22093 0.95171 0.88381 1.00949 1.61890 1.61051 1.03350 1.01449 1.20945 0.97218 0.98228 0.85733 1.21067 0.91217 0.93910 0.95355 1.22228 1.02555 0.97880 0.96255 1.21991 0.94544 0.98221 0.95559 1.22493 0.97017 0.97486 1.02063 1.23176 0.99749 0.95295 0.89628 1.67433 1.08909 1.28396 1.17034 1.21861 0.93047 0.94601 0.79393 1.49426 1.14733 1.24540 1.26815 1.79366 0.93688 1.26446 1.20336 1.21734 0.89903 0.85219 0.92980 1.18937 0.95832 1.17449 1.17345 0.86368 1.26919 1.03753 0.92867 0.95379 1.70003 1.35270 1.11950 1.22904 0.84777 0.74555 0.79833 0.78346 1.16493 1.19514 1.19181 1.46284 1.13553 1.30831 1.31240 1.22017 1.05026 0.88174 0.89342 1.23138 0.92912 0.89090 0.86874 1.92551 1.10593 1.66765 1.89171 0.92169 0.91514 0.92733 0.91850 0.93354 0.89533 0.89586 0.83380 0.81620 0.81686 0.81576 0.87993 0.89581 0.89885 0.90015 0.89120 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 7.75 71.98 0.56 -4.21 16 2 C 0.06 2.25 5.28 86.30 0.46 2.70 16 3 N -0.55 -20.46 4.79 -913.17 -4.37 -24.84 16 4 C 0.11 3.14 5.10 85.56 0.44 3.58 16 5 C 0.12 3.59 5.86 42.55 0.25 3.84 16 6 C -0.17 -3.86 8.65 22.36 0.19 -3.66 16 7 C -0.08 -1.42 10.18 22.47 0.23 -1.19 16 8 C -0.17 -3.21 10.11 22.36 0.23 -2.98 16 9 C 0.08 1.97 11.18 84.67 0.95 2.91 16 10 N -0.51 -16.46 10.27 -183.88 -1.89 -18.35 16 11 C 0.32 12.89 5.84 170.81 1.00 13.89 16 12 N -0.37 -17.73 3.57 -359.73 -1.29 -19.02 16 13 N -0.37 -19.76 10.77 -55.17 -0.59 -20.36 16 14 C 0.35 17.82 7.50 133.52 1.00 18.82 16 15 C -0.45 -21.44 8.98 23.16 0.21 -21.23 16 16 H 0.12 4.86 7.11 -2.91 -0.02 4.84 16 17 C 0.03 1.54 5.50 85.28 0.47 2.01 16 18 N -0.78 -39.37 11.90 21.84 0.26 -39.11 16 19 Si 1.01 33.86 29.56 68.60 2.03 35.89 16 20 H -0.24 -7.45 7.11 99.48 0.71 -6.74 16 21 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 23 N -0.52 -23.75 3.17 -548.31 -1.74 -25.49 16 24 C 0.10 3.35 10.64 127.77 1.36 4.71 16 25 C 0.45 21.40 6.59 179.06 1.18 22.58 16 26 S -0.72 -32.94 24.85 -56.49 -1.40 -34.35 16 27 H 0.06 2.09 4.91 -2.39 -0.01 2.08 16 28 H 0.07 1.60 5.60 -2.39 -0.01 1.59 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 2.21 6.88 -2.38 -0.02 2.19 16 31 H 0.05 2.16 4.96 -2.39 -0.01 2.15 16 32 H 0.09 2.57 7.79 -2.39 -0.02 2.56 16 33 H 0.09 2.08 5.62 -2.39 -0.01 2.07 16 34 H 0.15 2.79 7.18 -2.91 -0.02 2.77 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.10 4.00 7.85 -2.39 -0.02 3.98 16 39 H 0.09 3.27 5.70 -2.39 -0.01 3.26 16 40 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.09 3.13 7.62 -2.39 -0.02 3.11 16 43 H 0.10 3.16 7.32 -2.39 -0.02 3.14 16 Total: -1.00 -69.87 356.64 0.56 -69.31 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 1.05 Total: 34.53 kcal Atomic # 6 Polarization: 33.26 SS G_CDS: 8.51 Total: 41.77 kcal Atomic # 7 Polarization: -137.54 SS G_CDS: -9.62 Total: -147.16 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Atomic # 16 Polarization: -32.94 SS G_CDS: -1.40 Total: -34.35 kcal Total: -69.87 0.56 -69.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794630233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.245 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds