Wall clock time and date at job start Tue Mar 31 2020 17:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.28268 * 2 1 4 4 C 1.54479 * 110.24700 * 238.02879 * 2 1 3 5 5 H 1.08999 * 111.00436 * 333.71227 * 4 2 1 6 6 O 1.45201 * 110.97465 * 97.46200 * 4 2 1 7 7 C 1.34224 * 117.00279 * 203.83354 * 6 4 2 8 8 O 1.20829 * 120.00123 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00187 * 179.97438 * 7 6 4 10 10 C 1.50703 * 109.47057 * 179.97438 * 9 7 6 11 11 C 1.38294 * 119.92983 * 90.00128 * 10 9 7 12 12 C 1.38096 * 120.06969 * 179.97438 * 11 10 9 13 13 C 1.38887 * 119.92909 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.06604 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00531 * 5.54199 * 14 13 12 16 16 H 1.07995 * 119.99437 * 354.94399 * 15 14 13 17 17 C 1.38650 * 120.00178 * 174.66237 * 15 14 13 18 18 N 1.31555 * 119.99956 * 0.28234 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 180.27275 * 17 15 14 20 20 H 1.48502 * 109.46727 * 60.00755 * 19 17 15 21 21 H 1.48505 * 109.47357 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47502 * 300.00646 * 19 17 15 23 23 C 1.38871 * 119.86145 * 0.28182 * 13 12 11 24 24 C 1.38100 * 119.92983 * 359.42253 * 23 13 12 25 25 C 1.54628 * 101.76399 * 215.58499 * 4 2 1 26 26 C 1.51279 * 104.19588 * 24.79145 * 25 4 2 27 27 O 1.21286 * 124.94023 * 163.78684 * 26 25 4 28 28 N 1.34415 * 110.11699 * 343.75196 * 26 25 4 29 29 C 1.46502 * 124.34945 * 179.56838 * 28 26 25 30 30 H 1.09003 * 109.46929 * 181.97236 * 1 2 3 31 31 H 1.08997 * 109.47124 * 301.97550 * 1 2 3 32 32 H 1.09002 * 109.47309 * 61.98045 * 1 2 3 33 33 H 1.08999 * 109.47003 * 60.00044 * 9 7 6 34 34 H 1.08993 * 109.46977 * 300.00063 * 9 7 6 35 35 H 1.08005 * 119.96959 * 359.97438 * 11 10 9 36 36 H 1.07998 * 120.03684 * 179.97438 * 12 11 10 37 37 H 0.97000 * 120.00014 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.03647 * 179.71990 * 23 13 12 39 39 H 1.07999 * 119.96606 * 180.27624 * 24 23 13 40 40 H 1.09002 * 110.49167 * 143.47530 * 25 4 2 41 41 H 1.09009 * 110.48380 * 266.11411 * 25 4 2 42 42 H 1.09000 * 109.47063 * 0.02562 * 29 28 26 43 43 H 1.08995 * 109.47143 * 120.02584 * 29 28 26 44 44 H 1.09005 * 109.47126 * 240.02574 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0646 -0.7674 -1.2295 5 1 1.3439 -1.5110 -1.5697 6 8 2.4097 0.1471 -2.3033 7 6 2.4107 -0.3498 -3.5502 8 8 2.1330 -1.5106 -3.7382 9 6 2.7583 0.5401 -4.7157 10 6 2.6869 -0.2552 -5.9938 11 6 1.4987 -0.3241 -6.6981 12 6 1.4301 -1.0516 -7.8699 13 6 2.5562 -1.7141 -8.3411 14 8 2.4920 -2.4296 -9.4929 15 6 1.3405 -2.3637 -10.1912 16 1 0.4943 -1.8278 -9.7877 17 6 1.2448 -2.9791 -11.4300 18 7 2.2757 -3.6320 -11.9215 19 14 -0.3481 -2.8814 -12.4008 20 1 -0.6704 -1.4591 -12.6810 21 1 -0.1928 -3.6158 -13.6822 22 1 -1.4476 -3.4918 -11.6110 23 6 3.7464 -1.6474 -7.6287 24 6 3.8101 -0.9132 -6.4608 25 6 3.3287 -1.4457 -0.6526 26 6 3.0523 -1.5443 0.8315 27 8 3.6583 -2.2550 1.6052 28 7 2.0379 -0.7292 1.1680 29 6 1.5071 -0.5872 2.5261 30 1 -0.3633 -1.0271 0.0354 31 1 -0.3633 0.5442 0.8717 32 1 -0.3634 0.4828 -0.9072 33 1 3.7680 0.9299 -4.5867 34 1 2.0522 1.3690 -4.7631 35 1 0.6235 0.1917 -6.3314 36 1 0.5019 -1.1053 -8.4193 37 1 2.2086 -4.0629 -12.7880 38 1 4.6225 -2.1652 -7.9902 39 1 4.7366 -0.8573 -5.9087 40 1 3.4593 -2.4385 -1.0831 41 1 4.2095 -0.8303 -0.8365 42 1 2.0607 -1.2385 3.2024 43 1 1.6125 0.4478 2.8510 44 1 0.4532 -0.8654 2.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806065320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:00 Heat of formation + Delta-G solvation = -115.242267 kcal Electronic energy + Delta-G solvation = -27552.310159 eV Core-core repulsion = 23435.877872 eV Total energy + Delta-G solvation = -4116.432286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.31671 -40.16699 -39.00595 -37.44461 -36.68617 -36.02659 -32.79364 -32.46067 -31.46291 -31.16919 -30.21721 -27.33592 -26.71697 -25.41838 -24.84405 -22.33254 -22.03789 -21.37361 -20.33478 -19.83478 -18.08214 -18.03591 -17.22804 -16.95269 -16.77517 -16.23935 -16.08453 -15.35950 -14.83286 -14.63434 -14.45252 -14.37956 -14.25461 -13.85564 -13.66639 -13.54547 -13.46800 -13.00251 -12.87866 -12.76200 -12.70482 -12.67060 -12.32418 -12.17723 -11.91144 -11.59283 -11.45106 -11.31747 -10.99389 -10.93928 -10.82282 -10.69498 -10.47097 -10.38911 -10.17393 -9.37907 -9.22358 -8.86174 -8.21656 -7.24655 -6.48175 -4.06950 1.95532 2.15455 2.19499 2.23395 2.39664 2.75072 3.11457 3.12560 3.15326 3.77191 3.92216 3.94121 4.20847 4.38117 4.54323 4.66764 4.80055 4.83961 4.88867 5.00877 5.06597 5.09341 5.12444 5.15002 5.21930 5.25564 5.29915 5.41348 5.45329 5.56720 5.63133 5.65765 5.78318 6.01346 6.16269 6.28409 6.35932 6.60146 6.64521 6.85405 7.00147 7.17459 7.29120 7.39959 7.72114 7.74773 7.77979 7.96563 8.97038 9.66356 10.69488 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.002022 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.217337 B =13844.761041 C =14123.718697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.097 0.903 4 C 0.081 3.919 5 H 0.110 0.890 6 O -0.349 6.349 7 C 0.455 3.545 8 O -0.484 6.484 9 C -0.048 4.048 10 C -0.187 4.187 11 C -0.052 4.052 12 C -0.234 4.234 13 C 0.160 3.840 14 O -0.175 6.175 15 C -0.393 4.393 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.192 4.192 24 C -0.056 4.056 25 C -0.175 4.175 26 C 0.525 3.475 27 O -0.527 6.527 28 N -0.618 5.618 29 C 0.093 3.907 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.271 0.729 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 11.765 22.940 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.115 0.885 4 C 0.025 3.975 5 H 0.127 0.873 6 O -0.267 6.267 7 C 0.297 3.703 8 O -0.368 6.368 9 C -0.085 4.085 10 C -0.188 4.188 11 C -0.071 4.071 12 C -0.253 4.253 13 C 0.105 3.895 14 O -0.077 6.077 15 C -0.469 4.469 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.211 4.211 24 C -0.074 4.074 25 C -0.215 4.215 26 C 0.313 3.687 27 O -0.403 6.403 28 N -0.354 5.354 29 C -0.049 4.049 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.703 10.717 23.047 25.561 hybrid contribution -0.942 -0.053 -0.439 1.041 sum -3.645 10.663 22.608 25.261 Atomic orbital electron populations 1.22121 0.92983 1.03299 1.03536 1.21598 0.95416 0.96683 0.83099 0.88469 1.23447 0.96871 0.91609 0.85544 0.87257 1.86566 1.80968 1.42976 1.16174 1.24372 0.74011 0.88766 0.83145 1.90724 1.42745 1.18462 1.84866 1.20109 1.04451 0.96545 0.87438 1.18609 0.95417 1.07659 0.97084 1.20521 0.95680 0.96813 0.94044 1.21107 0.99584 1.05090 0.99524 1.19416 0.93129 0.89358 0.87565 1.83977 1.37890 1.57293 1.28584 1.21294 0.89355 1.36058 1.00169 0.89039 1.25308 0.99195 0.95978 0.96037 1.70028 1.29755 1.31275 1.18454 0.85771 0.80041 0.78829 0.78734 1.19458 1.20251 1.19473 1.20162 0.96766 1.06375 0.97828 1.20422 0.96834 0.95327 0.94806 1.22859 1.00122 1.05074 0.93430 1.20661 0.79163 0.78614 0.90302 1.90745 1.51924 1.40618 1.56965 1.48246 1.35183 1.43317 1.08697 1.21587 0.99477 1.02423 0.81369 0.91570 0.91296 0.90327 0.87626 0.87659 0.87631 0.85462 0.91894 0.86394 0.87168 0.86860 0.86452 0.89707 0.91809 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.68 37.16 0.32 -0.54 16 2 C 0.14 0.93 3.68 -67.01 -0.25 0.68 16 3 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 4 C 0.08 0.74 2.92 -25.10 -0.07 0.67 16 5 H 0.11 1.10 7.10 -51.93 -0.37 0.73 16 6 O -0.35 -3.46 9.99 -39.24 -0.39 -3.85 16 7 C 0.46 5.66 7.95 36.01 0.29 5.95 16 8 O -0.48 -7.90 15.33 -18.75 -0.29 -8.19 16 9 C -0.05 -0.54 5.94 -29.03 -0.17 -0.71 16 10 C -0.19 -3.00 4.38 -104.58 -0.46 -3.46 16 11 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 12 C -0.23 -5.00 9.17 -39.39 -0.36 -5.36 16 13 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 14 O -0.17 -4.96 9.76 0.05 0.00 -4.96 16 15 C -0.39 -10.88 9.49 30.88 0.29 -10.59 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.07 13.67 55.48 0.76 -24.32 16 19 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.19 -4.03 9.99 -39.40 -0.39 -4.42 16 24 C -0.06 -0.96 9.69 -39.61 -0.38 -1.35 16 25 C -0.17 -1.68 6.62 -26.74 -0.18 -1.86 16 26 C 0.52 5.79 8.02 -10.86 -0.09 5.70 16 27 O -0.53 -7.76 17.35 5.55 0.10 -7.67 16 28 N -0.62 -5.06 3.18 -172.70 -0.55 -5.61 16 29 C 0.09 0.55 10.43 59.85 0.62 1.17 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 7.74 -51.93 -0.40 -0.13 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.12 1.02 8.11 -51.92 -0.42 0.60 16 42 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 0.28 7.67 -51.93 -0.40 -0.11 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.56 377.27 -7.18 -41.74 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.90 Total: 2.76 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.57 Total: -10.86 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.21 Total: -29.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.58 Total: -24.67 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.56 -7.18 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806065320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.500 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds