Wall clock time and date at job start Tue Mar 31 2020 17:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.28268 * 2 1 4 4 C 1.54479 * 110.24700 * 238.02879 * 2 1 3 5 5 H 1.08999 * 111.00436 * 333.71227 * 4 2 1 6 6 O 1.45201 * 110.97465 * 97.46200 * 4 2 1 7 7 C 1.34224 * 117.00279 * 203.83354 * 6 4 2 8 8 O 1.20829 * 120.00123 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00187 * 179.97438 * 7 6 4 10 10 C 1.50703 * 109.47057 * 179.97438 * 9 7 6 11 11 C 1.38294 * 119.92983 * 90.00128 * 10 9 7 12 12 C 1.38096 * 120.06969 * 179.97438 * 11 10 9 13 13 C 1.38887 * 119.92909 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.06604 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00531 * 5.54199 * 14 13 12 16 16 H 1.07995 * 119.99437 * 354.94399 * 15 14 13 17 17 C 1.38650 * 120.00178 * 174.66237 * 15 14 13 18 18 N 1.31555 * 119.99956 * 0.28234 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 180.27275 * 17 15 14 20 20 H 1.48502 * 109.46727 * 60.00755 * 19 17 15 21 21 H 1.48505 * 109.47357 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47502 * 300.00646 * 19 17 15 23 23 C 1.38871 * 119.86145 * 0.28182 * 13 12 11 24 24 C 1.38100 * 119.92983 * 359.42253 * 23 13 12 25 25 C 1.54628 * 101.76399 * 215.58499 * 4 2 1 26 26 C 1.51279 * 104.19588 * 24.79145 * 25 4 2 27 27 O 1.21286 * 124.94023 * 163.78684 * 26 25 4 28 28 N 1.34415 * 110.11699 * 343.75196 * 26 25 4 29 29 C 1.46502 * 124.34945 * 179.56838 * 28 26 25 30 30 H 1.09003 * 109.46929 * 181.97236 * 1 2 3 31 31 H 1.08997 * 109.47124 * 301.97550 * 1 2 3 32 32 H 1.09002 * 109.47309 * 61.98045 * 1 2 3 33 33 H 1.08999 * 109.47003 * 60.00044 * 9 7 6 34 34 H 1.08993 * 109.46977 * 300.00063 * 9 7 6 35 35 H 1.08005 * 119.96959 * 359.97438 * 11 10 9 36 36 H 1.07998 * 120.03684 * 179.97438 * 12 11 10 37 37 H 0.97000 * 120.00014 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.03647 * 179.71990 * 23 13 12 39 39 H 1.07999 * 119.96606 * 180.27624 * 24 23 13 40 40 H 1.09002 * 110.49167 * 143.47530 * 25 4 2 41 41 H 1.09009 * 110.48380 * 266.11411 * 25 4 2 42 42 H 1.09000 * 109.47063 * 0.02562 * 29 28 26 43 43 H 1.08995 * 109.47143 * 120.02584 * 29 28 26 44 44 H 1.09005 * 109.47126 * 240.02574 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0646 -0.7674 -1.2295 5 1 1.3439 -1.5110 -1.5697 6 8 2.4097 0.1471 -2.3033 7 6 2.4107 -0.3498 -3.5502 8 8 2.1330 -1.5106 -3.7382 9 6 2.7583 0.5401 -4.7157 10 6 2.6869 -0.2552 -5.9938 11 6 1.4987 -0.3241 -6.6981 12 6 1.4301 -1.0516 -7.8699 13 6 2.5562 -1.7141 -8.3411 14 8 2.4920 -2.4296 -9.4929 15 6 1.3405 -2.3637 -10.1912 16 1 0.4943 -1.8278 -9.7877 17 6 1.2448 -2.9791 -11.4300 18 7 2.2757 -3.6320 -11.9215 19 14 -0.3481 -2.8814 -12.4008 20 1 -0.6704 -1.4591 -12.6810 21 1 -0.1928 -3.6158 -13.6822 22 1 -1.4476 -3.4918 -11.6110 23 6 3.7464 -1.6474 -7.6287 24 6 3.8101 -0.9132 -6.4608 25 6 3.3287 -1.4457 -0.6526 26 6 3.0523 -1.5443 0.8315 27 8 3.6583 -2.2550 1.6052 28 7 2.0379 -0.7292 1.1680 29 6 1.5071 -0.5872 2.5261 30 1 -0.3633 -1.0271 0.0354 31 1 -0.3633 0.5442 0.8717 32 1 -0.3634 0.4828 -0.9072 33 1 3.7680 0.9299 -4.5867 34 1 2.0522 1.3690 -4.7631 35 1 0.6235 0.1917 -6.3314 36 1 0.5019 -1.1053 -8.4193 37 1 2.2086 -4.0629 -12.7880 38 1 4.6225 -2.1652 -7.9902 39 1 4.7366 -0.8573 -5.9087 40 1 3.4593 -2.4385 -1.0831 41 1 4.2095 -0.8303 -0.8365 42 1 2.0607 -1.2385 3.2024 43 1 1.6125 0.4478 2.8510 44 1 0.4532 -0.8654 2.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806065320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:59 Heat of formation + Delta-G solvation = -137.277765 kcal Electronic energy + Delta-G solvation = -27553.265690 eV Core-core repulsion = 23435.877872 eV Total energy + Delta-G solvation = -4117.387817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.13711 -41.17245 -40.59603 -38.60696 -38.00377 -37.01468 -34.41502 -33.48604 -32.77437 -31.77846 -31.75660 -28.60786 -27.51253 -27.09473 -25.70901 -23.64125 -23.28624 -22.35544 -21.54320 -20.59473 -19.84773 -18.97288 -18.84463 -17.96499 -17.57771 -17.12598 -17.00510 -16.41621 -16.28559 -16.17202 -15.84565 -15.49723 -15.22320 -15.05178 -14.99453 -14.53708 -14.46412 -14.29347 -14.14063 -13.75383 -13.61039 -13.37366 -13.20790 -13.04972 -12.95969 -12.80941 -12.71144 -12.47477 -12.32767 -12.29617 -12.17367 -12.13471 -11.81160 -11.42745 -11.17637 -11.04288 -10.78204 -9.87659 -9.76149 -8.93616 -8.46972 -6.15350 0.58658 0.62429 1.24717 1.34589 1.34950 1.42877 1.51393 1.51951 1.97579 2.18154 2.83128 3.08532 3.15315 3.22807 3.50031 3.52022 3.75522 3.82169 4.05711 4.12510 4.13868 4.20289 4.26634 4.32276 4.47550 4.52630 4.59441 4.61267 4.64067 4.73502 4.78441 4.81046 4.83243 4.91474 5.07930 5.14819 5.21698 5.29988 5.39530 5.44962 5.56618 5.72226 5.74996 5.88887 6.03019 6.23238 6.80602 6.93134 6.97412 7.78473 8.76040 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.002022 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.217337 B =13844.761041 C =14123.718697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 H 0.118 0.882 4 C 0.081 3.919 5 H 0.098 0.902 6 O -0.332 6.332 7 C 0.464 3.536 8 O -0.530 6.530 9 C -0.047 4.047 10 C -0.159 4.159 11 C -0.053 4.053 12 C -0.246 4.246 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.209 4.209 24 C -0.053 4.053 25 C -0.173 4.173 26 C 0.518 3.482 27 O -0.574 6.574 28 N -0.612 5.612 29 C 0.086 3.914 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.273 0.727 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 15.411 25.704 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.136 0.864 4 C 0.024 3.976 5 H 0.116 0.884 6 O -0.248 6.248 7 C 0.308 3.692 8 O -0.418 6.418 9 C -0.084 4.084 10 C -0.159 4.159 11 C -0.071 4.071 12 C -0.265 4.265 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.183 1.183 23 C -0.229 4.229 24 C -0.071 4.071 25 C -0.213 4.213 26 C 0.306 3.694 27 O -0.454 6.454 28 N -0.346 5.346 29 C -0.054 4.054 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.167 0.833 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.323 14.447 25.882 29.954 hybrid contribution -0.353 -0.980 -0.878 1.362 sum -4.676 13.467 25.004 28.782 Atomic orbital electron populations 1.22130 0.91437 1.03219 1.04858 1.21732 0.96461 0.96798 0.81154 0.86430 1.23521 0.96262 0.91778 0.86001 0.88381 1.86546 1.80405 1.42397 1.15444 1.24440 0.72740 0.87976 0.84031 1.90750 1.45043 1.20464 1.85554 1.20259 1.08035 0.96188 0.83912 1.19204 0.93828 1.04850 0.98053 1.20985 0.97886 0.95766 0.92476 1.21248 0.98463 1.05730 1.01064 1.20001 0.95301 0.90893 0.87370 1.83940 1.38673 1.60475 1.30888 1.21794 0.89882 1.36475 1.00850 0.88027 1.26628 1.03308 0.95366 0.96921 1.70183 1.32644 1.33789 1.19293 0.84638 0.75041 0.79560 0.76910 1.17883 1.19694 1.18282 1.20445 0.95822 1.07382 0.99201 1.20916 0.99169 0.93679 0.93320 1.22824 1.01035 1.04790 0.92683 1.20865 0.79495 0.78544 0.90505 1.90716 1.53825 1.42770 1.58106 1.48394 1.33990 1.42171 1.10032 1.21801 1.00121 1.03652 0.79823 0.92455 0.89264 0.89673 0.83880 0.83722 0.83722 0.86348 0.91851 0.87111 0.83279 0.88185 0.85293 0.91335 0.89348 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.68 71.98 0.62 -0.45 16 2 C 0.14 1.42 3.68 45.44 0.17 1.59 16 3 H 0.12 0.81 8.10 -2.38 -0.02 0.79 16 4 C 0.08 1.24 2.92 31.65 0.09 1.33 16 5 H 0.10 1.80 7.10 -2.39 -0.02 1.78 16 6 O -0.33 -5.06 9.99 -51.36 -0.51 -5.57 16 7 C 0.46 9.49 7.95 71.24 0.57 10.06 16 8 O -0.53 -15.95 15.33 21.95 0.34 -15.61 16 9 C -0.05 -0.77 5.94 29.10 0.17 -0.60 16 10 C -0.16 -4.47 4.38 -19.83 -0.09 -4.56 16 11 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 12 C -0.25 -10.62 9.17 22.39 0.21 -10.42 16 13 C 0.11 5.77 6.65 22.58 0.15 5.92 16 14 O -0.23 -14.25 9.76 -22.72 -0.22 -14.47 16 15 C -0.41 -24.31 9.49 67.92 0.64 -23.67 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 18 N -0.92 -57.08 13.67 21.61 0.30 -56.78 16 19 Si 1.02 42.94 29.55 68.60 2.03 44.96 16 20 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 23 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 24 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 25 C -0.17 -3.09 6.62 30.59 0.20 -2.88 16 26 C 0.52 10.95 8.02 87.90 0.71 11.65 16 27 O -0.57 -17.14 17.35 -3.05 -0.05 -17.19 16 28 N -0.61 -8.56 3.18 -818.90 -2.61 -11.17 16 29 C 0.09 0.80 10.43 127.77 1.33 2.13 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.28 7.74 -2.39 -0.02 0.26 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.15 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.13 1.95 8.11 -2.38 -0.02 1.93 16 42 H 0.07 0.90 7.53 -2.39 -0.02 0.88 16 43 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.08 0.48 7.67 -2.38 -0.02 0.46 16 Total: -1.00 -84.18 377.27 6.18 -78.00 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.02 Total: 20.43 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.90 Total: -22.60 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -2.31 Total: -67.95 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.45 Total: -52.84 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -84.18 6.18 -78.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806065320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.282 kcal (2) G-P(sol) polarization free energy of solvation -84.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds